Detection of new genetic variants of Betacoronaviruses in Endemic Frugivorous Bats of Madagascar.
Identifieur interne : 001641 ( PubMed/Corpus ); précédent : 001640; suivant : 001642Detection of new genetic variants of Betacoronaviruses in Endemic Frugivorous Bats of Madagascar.
Auteurs : Norosoa H. Razanajatovo ; Lalaina A. Nomenjanahary ; David A. Wilkinson ; Julie H. Razafimanahaka ; Steven M. Goodman ; Richard K. Jenkins ; Julia P G. Jones ; Jean-Michel HeraudSource :
- Virology journal [ 1743-422X ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- geographic : Madagascar.
- classification : Coronaviridae.
- genetics : Coronaviridae.
- isolation & purification : Coronaviridae.
- veterinary : Coronaviridae Infections.
- virology : Chiroptera.
- Animals, Genes, Viral, Genetic Variation, Geography, Phylogeny.
Abstract
Bats are amongst the natural reservoirs of many coronaviruses (CoVs) of which some can lead to severe infection in human. African bats are known to harbor a range of pathogens (e.g., Ebola and Marburg viruses) that can infect humans and cause disease outbreaks. A recent study in South Africa isolated a genetic variant closely related to MERS-CoV from an insectivorous bat. Though Madagascar is home to 44 bat species (41 insectivorous and 3 frugivorous) of which 34 are endemic, no data exists concerning the circulation of CoVs in the island's chiropteran fauna. Certain Malagasy bats can be frequently found in close contact with humans and frugivorous bats feed in the same trees where people collect and consume fruits and are hunted and consumed as bush meat. The purpose of our study is to detect and identify CoVs from frugivorous bats in Madagascar to evaluate the risk of human infection from infected bats.
DOI: 10.1186/s12985-015-0271-y
PubMed: 25888853
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Razanajatovo</name><affiliation><nlm:affiliation>Virology Unit, Institut Pasteur of Madagascar, Ambatofotsikely, BP 1274, Antananarivo, Madagascar, Dummy_Only. norosoa@pasteur.mg.</nlm:affiliation></affiliation></author><author><name sortKey="Nomenjanahary, Lalaina A" sort="Nomenjanahary, Lalaina A" uniqKey="Nomenjanahary L" first="Lalaina A" last="Nomenjanahary">Lalaina A. Nomenjanahary</name><affiliation><nlm:affiliation>Virology Unit, Institut Pasteur of Madagascar, Ambatofotsikely, BP 1274, Antananarivo, Madagascar, Dummy_Only. lalaina@pasteur.mg.</nlm:affiliation></affiliation></author><author><name sortKey="Wilkinson, David A" sort="Wilkinson, David A" uniqKey="Wilkinson D" first="David A" last="Wilkinson">David A. Wilkinson</name><affiliation><nlm:affiliation>Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Ocean Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Riviere, 97490, Sainte Clotilde, La Reunion, France. dwilkin799@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Razafimanahaka, Julie H" sort="Razafimanahaka, Julie H" uniqKey="Razafimanahaka J" first="Julie H" last="Razafimanahaka">Julie H. Razafimanahaka</name><affiliation><nlm:affiliation>Madagasikara Voakajy, BP 5181, Antananarivo, Madagascar. hantajulie@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Goodman, Steven M" sort="Goodman, Steven M" uniqKey="Goodman S" first="Steven M" last="Goodman">Steven M. Goodman</name><affiliation><nlm:affiliation>Association Vahatra, BP 3972, Antananarivo, Madagascar. sgoodman@fieldmuseum.org.</nlm:affiliation></affiliation></author><author><name sortKey="Jenkins, Richard K" sort="Jenkins, Richard K" uniqKey="Jenkins R" first="Richard K" last="Jenkins">Richard K. Jenkins</name><affiliation><nlm:affiliation>School of Environment, Natural Resources and Geography, Bangor University, Bangor, Gwynedd, United Kingdom. rkbjenkins@gmail.com.</nlm:affiliation></affiliation></author><author><name sortKey="Jones, Julia P G" sort="Jones, Julia P G" uniqKey="Jones J" first="Julia P G" last="Jones">Julia P G. Jones</name><affiliation><nlm:affiliation>School of Environment, Natural Resources and Geography, Bangor University, Bangor, Gwynedd, United Kingdom. julia.jones@bangor.ac.uk.</nlm:affiliation></affiliation></author><author><name sortKey="Heraud, Jean Michel" sort="Heraud, Jean Michel" uniqKey="Heraud J" first="Jean-Michel" last="Heraud">Jean-Michel Heraud</name><affiliation><nlm:affiliation>Virology Unit, Institut Pasteur of Madagascar, Ambatofotsikely, BP 1274, Antananarivo, Madagascar, Dummy_Only. jmheraud@pasteur.mg.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Virology journal</title><idno type="eISSN">1743-422X</idno><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chiroptera (virology)</term><term>Coronaviridae (classification)</term><term>Coronaviridae (genetics)</term><term>Coronaviridae (isolation & purification)</term><term>Coronaviridae Infections (veterinary)</term><term>Genes, Viral</term><term>Genetic Variation</term><term>Geography</term><term>Madagascar</term><term>Phylogeny</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Madagascar</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronaviridae</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronaviridae Infections</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genes, Viral</term><term>Genetic Variation</term><term>Geography</term><term>Phylogeny</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Bats are amongst the natural reservoirs of many coronaviruses (CoVs) of which some can lead to severe infection in human. African bats are known to harbor a range of pathogens (e.g., Ebola and Marburg viruses) that can infect humans and cause disease outbreaks. A recent study in South Africa isolated a genetic variant closely related to MERS-CoV from an insectivorous bat. Though Madagascar is home to 44 bat species (41 insectivorous and 3 frugivorous) of which 34 are endemic, no data exists concerning the circulation of CoVs in the island's chiropteran fauna. Certain Malagasy bats can be frequently found in close contact with humans and frugivorous bats feed in the same trees where people collect and consume fruits and are hunted and consumed as bush meat. The purpose of our study is to detect and identify CoVs from frugivorous bats in Madagascar to evaluate the risk of human infection from infected bats.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">25888853</PMID><DateCompleted><Year>2016</Year><Month>03</Month><Day>24</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1743-422X</ISSN><JournalIssue CitedMedium="Internet"><Volume>12</Volume><PubDate><Year>2015</Year><Month>Mar</Month><Day>12</Day></PubDate></JournalIssue><Title>Virology journal</Title><ISOAbbreviation>Virol. J.</ISOAbbreviation></Journal><ArticleTitle>Detection of new genetic variants of Betacoronaviruses in Endemic Frugivorous Bats of Madagascar.</ArticleTitle><Pagination><MedlinePgn>42</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12985-015-0271-y</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Bats are amongst the natural reservoirs of many coronaviruses (CoVs) of which some can lead to severe infection in human. African bats are known to harbor a range of pathogens (e.g., Ebola and Marburg viruses) that can infect humans and cause disease outbreaks. A recent study in South Africa isolated a genetic variant closely related to MERS-CoV from an insectivorous bat. Though Madagascar is home to 44 bat species (41 insectivorous and 3 frugivorous) of which 34 are endemic, no data exists concerning the circulation of CoVs in the island's chiropteran fauna. Certain Malagasy bats can be frequently found in close contact with humans and frugivorous bats feed in the same trees where people collect and consume fruits and are hunted and consumed as bush meat. The purpose of our study is to detect and identify CoVs from frugivorous bats in Madagascar to evaluate the risk of human infection from infected bats.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">Frugivorous bats belonging to three species were captured in four different regions of Madagascar. We analyzed fecal and throat swabs to detect the presence of virus through amplification of the RNA-dependent RNA polymerase (RdRp) gene, which is highly conserved in all known coronaviruses. Phylogenetic analyses were performed from positive specimens.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">From 351 frugivorous bats, we detected 14 coronaviruses from two endemic bats species, of which 13 viruses were identified from Pteropus rufus and one from Eidolon dupreanum, giving an overall prevalence of 4.5%. Phylogenetic analysis revealed that the Malagasy strains belong to the genus Betacoronavirus but form three distinct clusters, which seem to represent previously undescribed genetic lineages.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">Our findings suggest that CoVs circulate in frugivorous bats of Madagascar, demonstrating the needs to evaluate spillover risk to human populations especially for individuals that hunt and consume infected bats. Possible dispersal mechanisms as to how coronaviruses arrived on Madagascar are discussed.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Razanajatovo</LastName><ForeName>Norosoa H</ForeName><Initials>NH</Initials><AffiliationInfo><Affiliation>Virology Unit, Institut Pasteur of Madagascar, Ambatofotsikely, BP 1274, Antananarivo, Madagascar, Dummy_Only. norosoa@pasteur.mg.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nomenjanahary</LastName><ForeName>Lalaina A</ForeName><Initials>LA</Initials><AffiliationInfo><Affiliation>Virology Unit, Institut Pasteur of Madagascar, Ambatofotsikely, BP 1274, Antananarivo, Madagascar, Dummy_Only. lalaina@pasteur.mg.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Wilkinson</LastName><ForeName>David A</ForeName><Initials>DA</Initials><AffiliationInfo><Affiliation>Centre de Recherche et de Veille sur les Maladies Emergentes dans l'Ocean Indien (CRVOI), Plateforme de Recherche CYROI, 2 rue Maxime Riviere, 97490, Sainte Clotilde, La Reunion, France. dwilkin799@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Razafimanahaka</LastName><ForeName>Julie H</ForeName><Initials>JH</Initials><AffiliationInfo><Affiliation>Madagasikara Voakajy, BP 5181, Antananarivo, Madagascar. hantajulie@gmail.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Animal Biology, Faculty of Sciences, University of Antananarivo, BP 906, Antananarivo, Madagascar. hantajulie@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Goodman</LastName><ForeName>Steven M</ForeName><Initials>SM</Initials><AffiliationInfo><Affiliation>Association Vahatra, BP 3972, Antananarivo, Madagascar. sgoodman@fieldmuseum.org.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jenkins</LastName><ForeName>Richard K</ForeName><Initials>RK</Initials><AffiliationInfo><Affiliation>School of Environment, Natural Resources and Geography, Bangor University, Bangor, Gwynedd, United Kingdom. rkbjenkins@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Julia P G</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>School of Environment, Natural Resources and Geography, Bangor University, Bangor, Gwynedd, United Kingdom. julia.jones@bangor.ac.uk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heraud</LastName><ForeName>Jean-Michel</ForeName><Initials>JM</Initials><AffiliationInfo><Affiliation>Virology Unit, Institut Pasteur of Madagascar, Ambatofotsikely, BP 1274, Antananarivo, Madagascar, Dummy_Only. jmheraud@pasteur.mg.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>03</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Virol J</MedlineTA><NlmUniqueID>101231645</NlmUniqueID><ISSNLinking>1743-422X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002685" MajorTopicYN="N">Chiroptera</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003332" MajorTopicYN="N">Coronaviridae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003333" MajorTopicYN="N">Coronaviridae Infections</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005814" MajorTopicYN="N">Genes, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005843" MajorTopicYN="N">Geography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008270" MajorTopicYN="N" Type="Geographic">Madagascar</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2014</Year><Month>09</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>02</Month><Day>24</Day></PubMedPubDate><PubMedPubDate 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