A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene.
Identifieur interne : 000F53 ( PubMed/Corpus ); précédent : 000F52; suivant : 000F54A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene.
Auteurs : Canping Huang ; William J. Liu ; Wen Xu ; Tao Jin ; Yingze Zhao ; Jingdong Song ; Yi Shi ; Wei Ji ; Hao Jia ; Yongming Zhou ; Honghua Wen ; Honglan Zhao ; Huaxing Liu ; Hong Li ; Qihui Wang ; Ying Wu ; Liang Wang ; Di Liu ; Guang Liu ; Hongjie Yu ; Edward C. Holmes ; Lin Lu ; George F. GaoSource :
- PLoS pathogens [ 1553-7374 ] ; 2016.
Abstract
The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012 has generated enormous interest in the biodiversity, genomics and cross-species transmission potential of coronaviruses, especially those from bats, the second most speciose order of mammals. Herein, we identified a novel coronavirus, provisionally designated Rousettus bat coronavirus GCCDC1 (Ro-BatCoV GCCDC1), in the rectal swab samples of Rousettus leschenaulti bats by using pan-coronavirus RT-PCR and next-generation sequencing. Although the virus is similar to Rousettus bat coronavirus HKU9 (Ro-BatCoV HKU9) in genome characteristics, it is sufficiently distinct to be classified as a new species according to the criteria defined by the International Committee of Taxonomy of Viruses (ICTV). More striking was that Ro-BatCoV GCCDC1 contained a unique gene integrated into the 3'-end of the genome that has no homologs in any known coronavirus, but which sequence and phylogeny analyses indicated most likely originated from the p10 gene of a bat orthoreovirus. Subgenomic mRNA and cellular-level observations demonstrated that the p10 gene is functional and induces the formation of cell syncytia. Therefore, here we report a putative heterologous inter-family recombination event between a single-stranded, positive-sense RNA virus and a double-stranded segmented RNA virus, providing insights into the fundamental mechanisms of viral evolution.
DOI: 10.1371/journal.ppat.1005883
PubMed: 27676249
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pubmed:27676249Le document en format XML
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<affiliation><nlm:affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</nlm:affiliation>
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<author><name sortKey="Liu, William J" sort="Liu, William J" uniqKey="Liu W" first="William J" last="Liu">William J. Liu</name>
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<author><name sortKey="Jin, Tao" sort="Jin, Tao" uniqKey="Jin T" first="Tao" last="Jin">Tao Jin</name>
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<author><name sortKey="Zhao, Yingze" sort="Zhao, Yingze" uniqKey="Zhao Y" first="Yingze" last="Zhao">Yingze Zhao</name>
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<author><name sortKey="Shi, Yi" sort="Shi, Yi" uniqKey="Shi Y" first="Yi" last="Shi">Yi Shi</name>
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<author><name sortKey="Wang, Qihui" sort="Wang, Qihui" uniqKey="Wang Q" first="Qihui" last="Wang">Qihui Wang</name>
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<author><name sortKey="Wu, Ying" sort="Wu, Ying" uniqKey="Wu Y" first="Ying" last="Wu">Ying Wu</name>
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<author><name sortKey="Wang, Liang" sort="Wang, Liang" uniqKey="Wang L" first="Liang" last="Wang">Liang Wang</name>
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<author><name sortKey="Liu, Di" sort="Liu, Di" uniqKey="Liu D" first="Di" last="Liu">Di Liu</name>
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<author><name sortKey="Liu, Guang" sort="Liu, Guang" uniqKey="Liu G" first="Guang" last="Liu">Guang Liu</name>
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<author><name sortKey="Yu, Hongjie" sort="Yu, Hongjie" uniqKey="Yu H" first="Hongjie" last="Yu">Hongjie Yu</name>
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<author><name sortKey="Lu, Lin" sort="Lu, Lin" uniqKey="Lu L" first="Lin" last="Lu">Lin Lu</name>
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<author><name sortKey="Gao, George F" sort="Gao, George F" uniqKey="Gao G" first="George F" last="Gao">George F. Gao</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene.</title>
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<author><name sortKey="Xu, Wen" sort="Xu, Wen" uniqKey="Xu W" first="Wen" last="Xu">Wen Xu</name>
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<author><name sortKey="Jin, Tao" sort="Jin, Tao" uniqKey="Jin T" first="Tao" last="Jin">Tao Jin</name>
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<author><name sortKey="Zhao, Yingze" sort="Zhao, Yingze" uniqKey="Zhao Y" first="Yingze" last="Zhao">Yingze Zhao</name>
<affiliation><nlm:affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</nlm:affiliation>
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<author><name sortKey="Song, Jingdong" sort="Song, Jingdong" uniqKey="Song J" first="Jingdong" last="Song">Jingdong Song</name>
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<author><name sortKey="Ji, Wei" sort="Ji, Wei" uniqKey="Ji W" first="Wei" last="Ji">Wei Ji</name>
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<author><name sortKey="Jia, Hao" sort="Jia, Hao" uniqKey="Jia H" first="Hao" last="Jia">Hao Jia</name>
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<author><name sortKey="Zhao, Honglan" sort="Zhao, Honglan" uniqKey="Zhao H" first="Honglan" last="Zhao">Honglan Zhao</name>
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<author><name sortKey="Liu, Huaxing" sort="Liu, Huaxing" uniqKey="Liu H" first="Huaxing" last="Liu">Huaxing Liu</name>
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<author><name sortKey="Li, Hong" sort="Li, Hong" uniqKey="Li H" first="Hong" last="Li">Hong Li</name>
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<author><name sortKey="Wang, Qihui" sort="Wang, Qihui" uniqKey="Wang Q" first="Qihui" last="Wang">Qihui Wang</name>
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<author><name sortKey="Wu, Ying" sort="Wu, Ying" uniqKey="Wu Y" first="Ying" last="Wu">Ying Wu</name>
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<author><name sortKey="Wang, Liang" sort="Wang, Liang" uniqKey="Wang L" first="Liang" last="Wang">Liang Wang</name>
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</affiliation>
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<author><name sortKey="Liu, Guang" sort="Liu, Guang" uniqKey="Liu G" first="Guang" last="Liu">Guang Liu</name>
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<author><name sortKey="Yu, Hongjie" sort="Yu, Hongjie" uniqKey="Yu H" first="Hongjie" last="Yu">Hongjie Yu</name>
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</affiliation>
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<author><name sortKey="Holmes, Edward C" sort="Holmes, Edward C" uniqKey="Holmes E" first="Edward C" last="Holmes">Edward C. Holmes</name>
<affiliation><nlm:affiliation>Marie Bashir Institute of Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia.</nlm:affiliation>
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<author><name sortKey="Lu, Lin" sort="Lu, Lin" uniqKey="Lu L" first="Lin" last="Lu">Lin Lu</name>
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<front><div type="abstract" xml:lang="en">The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012 has generated enormous interest in the biodiversity, genomics and cross-species transmission potential of coronaviruses, especially those from bats, the second most speciose order of mammals. Herein, we identified a novel coronavirus, provisionally designated Rousettus bat coronavirus GCCDC1 (Ro-BatCoV GCCDC1), in the rectal swab samples of Rousettus leschenaulti bats by using pan-coronavirus RT-PCR and next-generation sequencing. Although the virus is similar to Rousettus bat coronavirus HKU9 (Ro-BatCoV HKU9) in genome characteristics, it is sufficiently distinct to be classified as a new species according to the criteria defined by the International Committee of Taxonomy of Viruses (ICTV). More striking was that Ro-BatCoV GCCDC1 contained a unique gene integrated into the 3'-end of the genome that has no homologs in any known coronavirus, but which sequence and phylogeny analyses indicated most likely originated from the p10 gene of a bat orthoreovirus. Subgenomic mRNA and cellular-level observations demonstrated that the p10 gene is functional and induces the formation of cell syncytia. Therefore, here we report a putative heterologous inter-family recombination event between a single-stranded, positive-sense RNA virus and a double-stranded segmented RNA virus, providing insights into the fundamental mechanisms of viral evolution.</div>
</front>
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<DateRevised><Year>2019</Year>
<Month>11</Month>
<Day>20</Day>
</DateRevised>
<Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">1553-7374</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>12</Volume>
<Issue>9</Issue>
<PubDate><Year>2016</Year>
<Month>Sep</Month>
</PubDate>
</JournalIssue>
<Title>PLoS pathogens</Title>
<ISOAbbreviation>PLoS Pathog.</ISOAbbreviation>
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<ArticleTitle>A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene.</ArticleTitle>
<Pagination><MedlinePgn>e1005883</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.ppat.1005883</ELocationID>
<Abstract><AbstractText>The emergence of severe acute respiratory syndrome coronavirus (SARS-CoV) in 2002 and Middle East respiratory syndrome coronavirus (MERS-CoV) in 2012 has generated enormous interest in the biodiversity, genomics and cross-species transmission potential of coronaviruses, especially those from bats, the second most speciose order of mammals. Herein, we identified a novel coronavirus, provisionally designated Rousettus bat coronavirus GCCDC1 (Ro-BatCoV GCCDC1), in the rectal swab samples of Rousettus leschenaulti bats by using pan-coronavirus RT-PCR and next-generation sequencing. Although the virus is similar to Rousettus bat coronavirus HKU9 (Ro-BatCoV HKU9) in genome characteristics, it is sufficiently distinct to be classified as a new species according to the criteria defined by the International Committee of Taxonomy of Viruses (ICTV). More striking was that Ro-BatCoV GCCDC1 contained a unique gene integrated into the 3'-end of the genome that has no homologs in any known coronavirus, but which sequence and phylogeny analyses indicated most likely originated from the p10 gene of a bat orthoreovirus. Subgenomic mRNA and cellular-level observations demonstrated that the p10 gene is functional and induces the formation of cell syncytia. Therefore, here we report a putative heterologous inter-family recombination event between a single-stranded, positive-sense RNA virus and a double-stranded segmented RNA virus, providing insights into the fundamental mechanisms of viral evolution.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Huang</LastName>
<ForeName>Canping</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>William J</ForeName>
<Initials>WJ</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Xu</LastName>
<ForeName>Wen</ForeName>
<Initials>W</Initials>
<AffiliationInfo><Affiliation>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jin</LastName>
<ForeName>Tao</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>China National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhao</LastName>
<ForeName>Yingze</ForeName>
<Initials>Y</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0003-2406-1855</Identifier>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Song</LastName>
<ForeName>Jingdong</ForeName>
<Initials>J</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0001-8808-1981</Identifier>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Shi</LastName>
<ForeName>Yi</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ji</LastName>
<ForeName>Wei</ForeName>
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<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Jia</LastName>
<ForeName>Hao</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhou</LastName>
<ForeName>Yongming</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wen</LastName>
<ForeName>Honghua</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Center for Disease Control and Prevention of Mengla County, Mengla Yunnan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Zhao</LastName>
<ForeName>Honglan</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Huaxing</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Center for Disease Control and Prevention of Mengla County, Mengla Yunnan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Hong</ForeName>
<Initials>H</Initials>
<AffiliationInfo><Affiliation>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Qihui</ForeName>
<Initials>Q</Initials>
<AffiliationInfo><Affiliation>CAS Key Laboratory of Microbial and Metabolic Engineering, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wu</LastName>
<ForeName>Ying</ForeName>
<Initials>Y</Initials>
<AffiliationInfo><Affiliation>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Wang</LastName>
<ForeName>Liang</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
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<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Di</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Network Information Center, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Liu</LastName>
<ForeName>Guang</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>China National Genebank-Shenzhen, BGI-Shenzhen, Shenzhen, China.</Affiliation>
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<Author ValidYN="Y"><LastName>Yu</LastName>
<ForeName>Hongjie</ForeName>
<Initials>H</Initials>
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<Author ValidYN="Y"><LastName>Holmes</LastName>
<ForeName>Edward C</ForeName>
<Initials>EC</Initials>
<AffiliationInfo><Affiliation>Marie Bashir Institute of Infectious Diseases and Biosecurity, Charles Perkins Centre, School of Biological Sciences and Sydney Medical School, The University of Sydney, Sydney, New South Wales, Australia.</Affiliation>
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<ForeName>Lin</ForeName>
<Initials>L</Initials>
<AffiliationInfo><Affiliation>Yunnan Provincial Center for Disease Control and Prevention, Kunming Yunnan, China.</Affiliation>
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<ForeName>George F</ForeName>
<Initials>GF</Initials>
<AffiliationInfo><Affiliation>National Institute for Viral Disease Control and Prevention, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>College of Laboratory Medicine and Life Sciences, Wenzhou Medical University, Wenzhou, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Laboratory of Protein Engineering and Vaccines, Tianjin Institute of Industrial Biotechnology, Chinese Academy of Sciences, Tianjin, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Research Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Office of Director-General, Chinese Center for Disease Control and Prevention (China CDC), Beijing, China.</Affiliation>
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