Prevalence and genetic diversity analysis of human coronaviruses among cross-border children.
Identifieur interne : 000A73 ( PubMed/Corpus ); précédent : 000A72; suivant : 000A74Prevalence and genetic diversity analysis of human coronaviruses among cross-border children.
Auteurs : Peilin Liu ; Lei Shi ; Wei Zhang ; Jianan He ; Chunxiao Liu ; Chunzhong Zhao ; Siu Kai Kong ; Jacky Fong Chuen Loo ; Dayong Gu ; Longfei HuSource :
- Virology journal [ 1743-422X ] ; 2017.
English descriptors
- KwdEn :
- Base Sequence, Child, Child, Preschool, China (epidemiology), Coronavirus (classification), Coronavirus (genetics), Coronavirus Infections (epidemiology), Coronavirus Infections (virology), Epidemiological Monitoring, Female, Genetic Testing, Genetic Variation, Hong Kong (epidemiology), Humans, Infant, Infant, Newborn, Male, Molecular Epidemiology, Mutation, Phylogeny, Prevalence, Respiratory Tract Infections (virology), Seasons.
- MESH :
- classification : Coronavirus.
- epidemiology : China, Coronavirus Infections, Hong Kong.
- genetics : Coronavirus.
- virology : Coronavirus Infections, Respiratory Tract Infections.
- Base Sequence, Child, Child, Preschool, Epidemiological Monitoring, Female, Genetic Testing, Genetic Variation, Humans, Infant, Infant, Newborn, Male, Molecular Epidemiology, Mutation, Phylogeny, Prevalence, Seasons.
Abstract
More than a decade after the outbreak of human coronaviruses (HCoVs) SARS in Guangdong province and Hong Kong SAR of China in 2002, there is still no reoccurrence, but the evolution and recombination of the coronaviruses in this region are still unknown. Therefore, surveillance on the prevalence and the virus variation of HCoVs circulation in this region is conducted.
DOI: 10.1186/s12985-017-0896-0
PubMed: 29166910
Links to Exploration step
pubmed:29166910Le document en format XML
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last="Zhang">Wei Zhang</name><affiliation><nlm:affiliation>Wuhan Institute of Virology, Chinese Academy of Science, Wuhan, 430071, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="He, Jianan" sort="He, Jianan" uniqKey="He J" first="Jianan" last="He">Jianan He</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Liu, Chunxiao" sort="Liu, Chunxiao" uniqKey="Liu C" first="Chunxiao" last="Liu">Chunxiao Liu</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhao, Chunzhong" sort="Zhao, Chunzhong" uniqKey="Zhao C" first="Chunzhong" last="Zhao">Chunzhong Zhao</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Kong, Siu Kai" sort="Kong, Siu Kai" uniqKey="Kong S" first="Siu Kai" last="Kong">Siu Kai Kong</name><affiliation><nlm:affiliation>Biochemistry Programme, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, Hong Kong SAR, China.</nlm:affiliation></affiliation></author><author><name sortKey="Loo, Jacky Fong Chuen" sort="Loo, Jacky Fong Chuen" uniqKey="Loo J" first="Jacky Fong Chuen" last="Loo">Jacky Fong Chuen 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Shenzhen, 518033, People's Republic of China. 18307550009@139.com.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:29166910</idno><idno type="pmid">29166910</idno><idno type="doi">10.1186/s12985-017-0896-0</idno><idno type="wicri:Area/PubMed/Corpus">000A73</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000A73</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Prevalence and genetic diversity analysis of human coronaviruses among cross-border children.</title><author><name sortKey="Liu, Peilin" sort="Liu, Peilin" uniqKey="Liu P" first="Peilin" last="Liu">Peilin Liu</name><affiliation><nlm:affiliation>Department of Health Inspection and Quarantine, School of Public Health, Sun Yat-sen University, Guangzhou, 510275, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Shi, Lei" sort="Shi, Lei" uniqKey="Shi L" first="Lei" last="Shi">Lei Shi</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhang, Wei" sort="Zhang, Wei" uniqKey="Zhang W" first="Wei" last="Zhang">Wei Zhang</name><affiliation><nlm:affiliation>Wuhan Institute of Virology, Chinese Academy of Science, Wuhan, 430071, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="He, Jianan" sort="He, Jianan" uniqKey="He J" first="Jianan" last="He">Jianan He</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Liu, Chunxiao" sort="Liu, Chunxiao" uniqKey="Liu C" first="Chunxiao" last="Liu">Chunxiao Liu</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Zhao, Chunzhong" sort="Zhao, Chunzhong" uniqKey="Zhao C" first="Chunzhong" last="Zhao">Chunzhong Zhao</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</nlm:affiliation></affiliation></author><author><name sortKey="Kong, Siu Kai" sort="Kong, Siu Kai" uniqKey="Kong S" first="Siu Kai" last="Kong">Siu Kai Kong</name><affiliation><nlm:affiliation>Biochemistry Programme, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, Hong Kong SAR, China.</nlm:affiliation></affiliation></author><author><name sortKey="Loo, Jacky Fong Chuen" sort="Loo, Jacky Fong Chuen" uniqKey="Loo J" first="Jacky Fong Chuen" last="Loo">Jacky Fong Chuen Loo</name><affiliation><nlm:affiliation>Biochemistry Programme, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, Hong Kong SAR, China. jackyfcloo@cuhk.edu.hk.</nlm:affiliation></affiliation></author><author><name sortKey="Gu, Dayong" sort="Gu, Dayong" uniqKey="Gu D" first="Dayong" last="Gu">Dayong Gu</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China. wanhood@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Hu, Longfei" sort="Hu, Longfei" uniqKey="Hu L" first="Longfei" last="Hu">Longfei Hu</name><affiliation><nlm:affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China. 18307550009@139.com.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Virology journal</title><idno type="eISSN">1743-422X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Base Sequence</term><term>Child</term><term>Child, Preschool</term><term>China (epidemiology)</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus Infections (epidemiology)</term><term>Coronavirus Infections (virology)</term><term>Epidemiological Monitoring</term><term>Female</term><term>Genetic Testing</term><term>Genetic Variation</term><term>Hong Kong (epidemiology)</term><term>Humans</term><term>Infant</term><term>Infant, Newborn</term><term>Male</term><term>Molecular Epidemiology</term><term>Mutation</term><term>Phylogeny</term><term>Prevalence</term><term>Respiratory Tract Infections (virology)</term><term>Seasons</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>China</term><term>Coronavirus Infections</term><term>Hong Kong</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Coronavirus Infections</term><term>Respiratory Tract Infections</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Base Sequence</term><term>Child</term><term>Child, Preschool</term><term>Epidemiological Monitoring</term><term>Female</term><term>Genetic Testing</term><term>Genetic Variation</term><term>Humans</term><term>Infant</term><term>Infant, Newborn</term><term>Male</term><term>Molecular Epidemiology</term><term>Mutation</term><term>Phylogeny</term><term>Prevalence</term><term>Seasons</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">More than a decade after the outbreak of human coronaviruses (HCoVs) SARS in Guangdong province and Hong Kong SAR of China in 2002, there is still no reoccurrence, but the evolution and recombination of the coronaviruses in this region are still unknown. Therefore, surveillance on the prevalence and the virus variation of HCoVs circulation in this region is conducted.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29166910</PMID><DateCompleted><Year>2018</Year><Month>09</Month><Day>07</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1743-422X</ISSN><JournalIssue CitedMedium="Internet"><Volume>14</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>11</Month><Day>22</Day></PubDate></JournalIssue><Title>Virology journal</Title><ISOAbbreviation>Virol. J.</ISOAbbreviation></Journal><ArticleTitle>Prevalence and genetic diversity analysis of human coronaviruses among cross-border children.</ArticleTitle><Pagination><MedlinePgn>230</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s12985-017-0896-0</ELocationID><Abstract><AbstractText Label="BACKGROUND">More than a decade after the outbreak of human coronaviruses (HCoVs) SARS in Guangdong province and Hong Kong SAR of China in 2002, there is still no reoccurrence, but the evolution and recombination of the coronaviruses in this region are still unknown. Therefore, surveillance on the prevalence and the virus variation of HCoVs circulation in this region is conducted.</AbstractText><AbstractText Label="METHODS">A total of 3298 nasopharyngeal swabs samples were collected from cross-border children (<6 years, crossing border between Southern China and Hong Kong SAR) showing symptoms of respiratory tract infection, such as fever (body temperature > 37.5 °C), from 2014 May to 2015 Dec. Viral nucleic acids were analyzed and sequenced to study the prevalence and genetic diversity of the four human coronaviruses. The statistical significance of the data was evaluated with Fisher chi-square test.</AbstractText><AbstractText Label="RESULTS">78 (2.37%; 95%CI 1.8-2.8%) out of 3298 nasopharyngeal swabs specimens were found to be positive for OC43 (36;1.09%), HKU1 (34; 1.03%), NL63 (6; 0.18%) and 229E (2;0.01%). None of SARS or MERS was detected. The HCoVs predominant circulating season was in transition of winter to spring, especially January and February and NL63 detected only in summer and fall. Complex population with an abundant genetic diversity of coronaviruses was circulating and they shared homology with the published strains (99-100%). Besides, phylogenetic evolutionary analysis indicated that OC43 coronaviruses were clustered into three clades (B,D,E), HKU1 clustered into two clades(A,B) and NL63 clustered into two clades(A,B). Moreover, several novel mutations including nucleotides substitution and the insertion of spike of the glycoprotein on the viral surface were discovered.</AbstractText><AbstractText Label="CONCLUSIONS">The detection rate and epidemic trend of coronaviruses were stable and no obvious fluctuations were found. The detected coronaviruses shared a conserved gene sequences in S and RdRp. However, mutants of the epidemic strains were detected, suggesting continuous monitoring of the human coronaviruses is in need among cross-border children, who are more likely to get infected and transmit the viruses across the border easily, in addition to the general public.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Peilin</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Department of Health Inspection and Quarantine, School of Public Health, Sun Yat-sen University, Guangzhou, 510275, People's Republic of China.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Shi</LastName><ForeName>Lei</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhang</LastName><ForeName>Wei</ForeName><Initials>W</Initials><AffiliationInfo><Affiliation>Wuhan Institute of Virology, Chinese Academy of Science, Wuhan, 430071, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>He</LastName><ForeName>Jianan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liu</LastName><ForeName>Chunxiao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zhao</LastName><ForeName>Chunzhong</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kong</LastName><ForeName>Siu Kai</ForeName><Initials>SK</Initials><AffiliationInfo><Affiliation>Biochemistry Programme, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, Hong Kong SAR, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Loo</LastName><ForeName>Jacky Fong Chuen</ForeName><Initials>JFC</Initials><Identifier Source="ORCID">0000-0002-0355-8865</Identifier><AffiliationInfo><Affiliation>Biochemistry Programme, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong, Hong Kong SAR, China. jackyfcloo@cuhk.edu.hk.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Biomedical Engineering, The Chinese University of Hong Kong, Hong Kong, Hong Kong SAR, China. jackyfcloo@cuhk.edu.hk.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gu</LastName><ForeName>Dayong</ForeName><Initials>D</Initials><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China. wanhood@163.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Shenzhen Academy of Inspection and Quarantine, Shenzhen, 518010, People's Republic of China. wanhood@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hu</LastName><ForeName>Longfei</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Central Laboratory of Health quarantine, Shenzhen International Travel Health Care Center and Shenzhen Academy of Inspection and Quarantine, Shenzhen Entry-exit Inspection and Quarantine Bureau, Shenzhen, 518033, People's Republic of China. 18307550009@139.com.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Shenzhen Academy of Inspection and Quarantine, Shenzhen, 518010, People's Republic of China. 18307550009@139.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2017</Year><Month>11</Month><Day>22</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Virol J</MedlineTA><NlmUniqueID>101231645</NlmUniqueID><ISSNLinking>1743-422X</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001483" MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002648" MajorTopicYN="N">Child</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002675" MajorTopicYN="N">Child, Preschool</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002681" MajorTopicYN="N">China</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017934" MajorTopicYN="N">Coronavirus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018352" MajorTopicYN="N">Coronavirus Infections</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D062665" MajorTopicYN="N">Epidemiological Monitoring</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005820" MajorTopicYN="N">Genetic Testing</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006723" MajorTopicYN="N">Hong Kong</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007223" MajorTopicYN="N">Infant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D007231" MajorTopicYN="N">Infant, Newborn</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017720" MajorTopicYN="N">Molecular Epidemiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009154" MajorTopicYN="N">Mutation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015995" MajorTopicYN="N">Prevalence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012141" MajorTopicYN="N">Respiratory Tract Infections</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012621" MajorTopicYN="N">Seasons</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Cross-border children</Keyword><Keyword MajorTopicYN="Y">Genetic diversity</Keyword><Keyword MajorTopicYN="Y">Human coronaviruses</Keyword><Keyword MajorTopicYN="Y">Molecular epidemiology</Keyword><Keyword MajorTopicYN="Y">Phylogenetic analysis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year><Month>05</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2017</Year><Month>11</Month><Day>15</Day></PubMedPubDate><PubMedPubDate 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