Identification of genetic relationships and subspecies signatures in Xylella fastidiosa.
Identifieur interne : 000597 ( PubMed/Corpus ); précédent : 000596; suivant : 000598Identification of genetic relationships and subspecies signatures in Xylella fastidiosa.
Auteurs : Nicolas Denancé ; Martial Briand ; Romain Gaborieau ; Sylvain Gaillard ; Marie-Agnès JacquesSource :
- BMC genomics [ 1471-2164 ] ; 2019.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Bacterial, DNA, Ribosomal, RNA, Ribosomal, 16S.
- classification : Xylella.
- genetics : Xylella.
- methods : Genomics, Sequence Analysis, DNA.
- Data Mining, Gene Ontology, Phylogeny, Polymorphism, Single Nucleotide.
Abstract
The phytopathogenic bacterium Xylella fastidiosa was thought to be restricted to the Americas where it infects and kills numerous hosts. Its detection worldwide has been blooming since 2013 in Europe and Asia. Genetically diverse, this species is divided into six subspecies but genetic traits governing this classification are poorly understood.
DOI: 10.1186/s12864-019-5565-9
PubMed: 30909861
Links to Exploration step
pubmed:30909861Le document en format XML
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<series><title level="j">BMC genomics</title>
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<term>DNA, Ribosomal (genetics)</term>
<term>Data Mining</term>
<term>Gene Ontology</term>
<term>Genomics (methods)</term>
<term>Phylogeny</term>
<term>Polymorphism, Single Nucleotide</term>
<term>RNA, Ribosomal, 16S (genetics)</term>
<term>Sequence Analysis, DNA (methods)</term>
<term>Xylella (classification)</term>
<term>Xylella (genetics)</term>
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<term>DNA, Ribosomal</term>
<term>RNA, Ribosomal, 16S</term>
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<term>Sequence Analysis, DNA</term>
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<front><div type="abstract" xml:lang="en">The phytopathogenic bacterium Xylella fastidiosa was thought to be restricted to the Americas where it infects and kills numerous hosts. Its detection worldwide has been blooming since 2013 in Europe and Asia. Genetically diverse, this species is divided into six subspecies but genetic traits governing this classification are poorly understood.</div>
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<DateCompleted><Year>2019</Year>
<Month>07</Month>
<Day>12</Day>
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<DateRevised><Year>2020</Year>
<Month>02</Month>
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<Month>Mar</Month>
<Day>25</Day>
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<Title>BMC genomics</Title>
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<ArticleTitle>Identification of genetic relationships and subspecies signatures in Xylella fastidiosa.</ArticleTitle>
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<Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The phytopathogenic bacterium Xylella fastidiosa was thought to be restricted to the Americas where it infects and kills numerous hosts. Its detection worldwide has been blooming since 2013 in Europe and Asia. Genetically diverse, this species is divided into six subspecies but genetic traits governing this classification are poorly understood.</AbstractText>
<AbstractText Label="RESULTS" NlmCategory="RESULTS">SkIf (Specific k-mers Identification) was designed and exploited for comparative genomics on a dataset of 46 X. fastidiosa genomes, including seven newly sequenced individuals. It was helpful to quickly check the synonymy between strains from different collections. SkIf identified specific SNPs within 16S rRNA sequences that can be employed for predicting the distribution of Xylella through data mining. Applied to inter- and intra-subspecies analyses, it identified specific k-mers in genes affiliated to differential gene ontologies. Chemotaxis-related genes more prevalently possess specific k-mers in genomes from subspecies fastidiosa, morus and sandyi taken as a whole group. In the subspecies pauca increased abundance of specific k-mers was found in genes associated with the bacterial cell wall/envelope/plasma membrane. Most often, the k-mer specificity occurred in core genes with non-synonymous SNPs in their sequences in genomes of the other subspecies, suggesting putative impact in the protein functions. The presence of two integrative and conjugative elements (ICEs) was identified, one chromosomic and an entire plasmid in a single strain of X. fastidiosa subsp. pauca. Finally, a revised taxonomy of X. fastidiosa into three major clades defined by the subspecies pauca (clade I), multiplex (clade II) and the combination of fastidiosa, morus and sandyi (clade III) was strongly supported by k-mers specifically associated with these subspecies.</AbstractText>
<AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">SkIf is a robust and rapid software, freely available, that can be dedicated to the comparison of sequence datasets and is applicable to any field of research. Applied to X. fastidiosa, an emerging pathogen in Europe, it provided an important resource to mine for identifying genetic markers of subspecies to optimize the strategies attempted to limit the pathogen dissemination in novel areas.</AbstractText>
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<ReferenceList><Reference><Citation>Nucleic Acids Res. 1999 Jun 1;27(11):2369-76</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10325427</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Comput Biol. 2000 Feb-Apr;7(1-2):203-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10890397</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nature. 2000 Jul 13;406(6792):151-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">10910347</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2001 Jun;67(6):2790-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">11375196</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2002 Sep 17;99(19):12403-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12205291</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Syst Appl Microbiol. 2002 Oct;25(3):340-52</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12421072</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2003 Feb;185(3):1018-26</Citation>
<ArticleIdList><ArticleId IdType="pubmed">12533478</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2004 Jan 22;20(2):289-90</Citation>
<ArticleIdList><ArticleId IdType="pubmed">14734327</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Syst Appl Microbiol. 2004 May;27(3):290-300</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15214634</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2004 Oct 26;5:163</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15507136</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Syst Appl Microbiol. 2004 Nov;27(6):755-62</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15612634</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2005 Feb 15;102(7):2567-72</Citation>
<ArticleIdList><ArticleId IdType="pubmed">15701695</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2005 Jul;71(7):3832-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16000795</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Cyst Fibros. 2005 Dec;4(4):267-70</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16266831</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 1981 Aug;42(2):357-63</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16345835</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 1986 Aug;52(2):383-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16347139</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2007 Jan;57(Pt 1):81-91</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17220447</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Res. 2008 May;18(5):821-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18349386</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2008 Jun;36(10):3420-35</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18445632</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19126-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19855009</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2010 Jun;100(6):601-11</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20465416</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2010 Sep;192(17):4534</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20601474</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Bacteriol. 2011 Oct;193(19):5576-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">21914886</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2012 May;102(5):456-60</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22236051</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2012 Jun 15;28(12):1647-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22543367</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2012 Jul;78(13):4702-14</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22544234</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(5):e37836</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22655073</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2013 Jan;41(Database issue):D590-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23193283</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2012;7(12):e52131</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23251694</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2013 Mar 1;29(5):652-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23325618</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Gigascience. 2012 Dec 27;1(1):18</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23587118</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2013 Aug;30(8):1745-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23699471</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2013 Oct 03;14:675</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24090403</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2013 Oct 10;1(5):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24115539</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2014 Jan;52(1):139-46</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24172157</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Syst Appl Microbiol. 2014 Feb;37(1):42-50</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24321274</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2014 Jan 16;2(1):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24435874</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2014 Mar 06;2(2):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24604658</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2014 May;80(10):3025-33</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24610840</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2014 Mar 20;2(2):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24652975</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2014 Sep 15;30(18):2659-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24880686</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS Comput Biol. 2014 Jul 17;10(7):e1003711</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25033408</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2014 Aug 21;2(4):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25146135</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Bioinformatics. 2014 Aug 29;15:293</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25176396</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2014 Dec 15;30(24):3541-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25355787</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>PLoS One. 2014 Nov 07;9(11):e112463</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25379725</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2015 Feb 18;43(3):e19</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25428359</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2015 Feb 12;3(1):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25676759</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2015 Mar 14;16:183</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25887914</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2016 Mar 15;32(6):929-31</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26576653</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2015 Dec 17;3(6):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26679584</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Appl Environ Microbiol. 2015 Dec 28;82(5):1556-68</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26712553</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>BMC Genomics. 2016 Mar 05;17:193</Citation>
<ArticleIdList><ArticleId IdType="pubmed">26945881</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2016 Apr 21;4(2):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27103713</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Arch Microbiol. 2016 Oct;198(8):803-12</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27209415</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2016 Nov;66(11):4766-4771</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27530392</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2016 Oct 13;4(5):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27738038</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2017 Feb 15;33(4):574-576</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27797770</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Phytopathology. 2017 Mar;107(3):305-312</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27827008</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Clin Microbiol. 2017 Feb;55(2):616-623</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27974538</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2017 Feb 9;5(6):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28183766</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Sci Rep. 2017 Dec;7(1):71</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28250430</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Genome Announc. 2017 Jul 6;5(27):</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28684573</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Nucleic Acids Res. 2017 Oct 13;45(18):e159</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29048594</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2018 Feb 15;34(4):568-575</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29444235</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Int J Syst Evol Microbiol. 2018 Apr;68(4):1251-1257</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29461181</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>New Phytol. 2018 Jul;219(2):824-836</Citation>
<ArticleIdList><ArticleId IdType="pubmed">29689134</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
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