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Molecular Epidemiology of Hospital Outbreak of Middle East Respiratory Syndrome, Riyadh, Saudi Arabia, 2014.

Identifieur interne : 001426 ( PubMed/Checkpoint ); précédent : 001425; suivant : 001427

Molecular Epidemiology of Hospital Outbreak of Middle East Respiratory Syndrome, Riyadh, Saudi Arabia, 2014.

Auteurs : Shamsudeen F. Fagbo ; Leila Skakni ; Daniel K W. Chu ; Musa A. Garbati ; Mercy Joseph ; Malik Peiris ; Ahmed M. Hakawi

Source :

RBID : pubmed:26484549

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English descriptors

Abstract

We investigated an outbreak of Middle East respiratory syndrome (MERS) at King Fahad Medical City (KFMC), Riyadh, Saudi Arabia, during March 29-May 21, 2014. This outbreak involved 45 patients: 8 infected outside KFMC, 13 long-term patients at KFMC, 23 health care workers, and 1 who had an indeterminate source of infection. Sequences of full-length MERS coronavirus (MERS-CoV) from 10 patients and a partial sequence of MERS-CoV from another patient, when compared with other MERS-CoV sequences, demonstrated that this outbreak was part of a larger outbreak that affected multiple health care facilities in Riyadh and possibly arose from a single zoonotic transmission event that occurred in December 2013 (95% highest posterior density interval November 8, 2013-February 10, 2014). This finding suggested continued health care-associated transmission for 5 months. Molecular epidemiology documented multiple external introductions in a seemingly contiguous outbreak and helped support or refute transmission pathways suspected through epidemiologic investigation.

DOI: 10.3201/eid2111.150944
PubMed: 26484549


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<ArticleIdList>
<ArticleId IdType="pubmed">21540409</ArticleId>
</ArticleIdList>
</Reference>
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<Citation>N Engl J Med. 2012 Nov 8;367(19):1814-20</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23075143</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Cell Res. 2013 Aug;23(8):986-93</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23835475</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>N Engl J Med. 2013 Aug 1;369(5):407-16</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">23782161</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet. 2013 Dec 14;382(9909):1993-2002</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24055451</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet Infect Dis. 2014 Feb;14(2):140-5</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24355866</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Euro Surveill. 2014;19(21). pii: 20817</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">24906375</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>N Engl J Med. 2014 Aug 28;371(9):828-35</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25162889</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2014 Dec 1;59(11):1511-8</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25100864</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Clin Infect Dis. 2015 Feb 1;60(3):369-77</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">25323704</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>N Engl J Med. 2015 Feb 26;372(9):846-54</Citation>
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