The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics.
Identifieur interne : 000E72 ( PubMed/Checkpoint ); précédent : 000E71; suivant : 000E73The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics.
Auteurs : Jae Min [États-Unis] ; Eleonora Cella [Italie] ; Massimo Ciccozzi [Italie] ; Antonello Pelosi [Italie] ; Marco Salemi [États-Unis] ; Mattia Prosperi [États-Unis]Source :
- Global health research and policy [ 2397-0642 ] ; 2016.
Abstract
Since its discovery in 2012, over 1700 confirmed cases of Middle East Respiratory Syndrome (MERS) have been documented worldwide and more than a third of those cases have died. While the greatest number of cases has occurred in Saudi Arabia, the recent export of MERS-coronavirus (MERS-CoV) to Republic of Korea showed that a pandemic is a possibility that cannot be ignored. Due to the deficit of knowledge in transmission methodology, targeted treatment and possible vaccines, understanding this virus should be a priority. Our aim was to combine epidemiological data from literature with genetic information from viruses sequenced around the world to present a phylodynamic picture of MERS spread molecular level to global scale.
DOI: 10.1186/s41256-016-0014-7
PubMed: 29202063
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Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics.</title><author><name sortKey="Min, Jae" sort="Min, Jae" uniqKey="Min J" first="Jae" last="Min">Jae Min</name><affiliation wicri:level="2"><nlm:affiliation>Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, 2004 Mowry Rd, Gainesville, FL 32610-0231 USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Floride</region></placeName><wicri:cityArea>Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, 2004 Mowry Rd, Gainesville</wicri:cityArea></affiliation></author><author><name sortKey="Cella, Eleonora" sort="Cella, Eleonora" uniqKey="Cella E" first="Eleonora" last="Cella">Eleonora Cella</name><affiliation wicri:level="1"><nlm:affiliation>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Pelosi, Antonello" sort="Pelosi, Antonello" uniqKey="Pelosi A" first="Antonello" last="Pelosi">Antonello Pelosi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome</wicri:regionArea><placeName><settlement type="city">Rome</settlement><region nuts="2">Latium</region></placeName></affiliation></author><author><name sortKey="Salemi, Marco" sort="Salemi, Marco" uniqKey="Salemi M" first="Marco" last="Salemi">Marco Salemi</name><affiliation wicri:level="2"><nlm:affiliation>Department of Pathology, Immunology and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, 2055 Mowry Rd, Gainesville, FL 32611 USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Floride</region></placeName><wicri:cityArea>Department of Pathology, Immunology and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, 2055 Mowry Rd, Gainesville</wicri:cityArea></affiliation></author><author><name sortKey="Prosperi, Mattia" sort="Prosperi, Mattia" uniqKey="Prosperi M" first="Mattia" last="Prosperi">Mattia Prosperi</name><affiliation wicri:level="2"><nlm:affiliation>Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, 2004 Mowry Rd, Gainesville, FL 32610-0231 USA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Floride</region></placeName><wicri:cityArea>Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, 2004 Mowry Rd, Gainesville</wicri:cityArea></affiliation></author></analytic><series><title level="j">Global health research and policy</title><idno type="eISSN">2397-0642</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Since its discovery in 2012, over 1700 confirmed cases of Middle East Respiratory Syndrome (MERS) have been documented worldwide and more than a third of those cases have died. While the greatest number of cases has occurred in Saudi Arabia, the recent export of MERS-coronavirus (MERS-CoV) to Republic of Korea showed that a pandemic is a possibility that cannot be ignored. Due to the deficit of knowledge in transmission methodology, targeted treatment and possible vaccines, understanding this virus should be a priority. Our aim was to combine epidemiological data from literature with genetic information from viruses sequenced around the world to present a phylodynamic picture of MERS spread molecular level to global scale.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">29202063</PMID><DateRevised><Year>2019</Year><Month>11</Month><Day>20</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Electronic">2397-0642</ISSN><JournalIssue CitedMedium="Internet"><Volume>1</Volume><PubDate><Year>2016</Year></PubDate></JournalIssue><Title>Global health research and policy</Title><ISOAbbreviation>Glob Health Res Policy</ISOAbbreviation></Journal><ArticleTitle>The global spread of Middle East respiratory syndrome: an analysis fusing traditional epidemiological tracing and molecular phylodynamics.</ArticleTitle><Pagination><MedlinePgn>14</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s41256-016-0014-7</ELocationID><Abstract><AbstractText Label="Background" NlmCategory="UNASSIGNED">Since its discovery in 2012, over 1700 confirmed cases of Middle East Respiratory Syndrome (MERS) have been documented worldwide and more than a third of those cases have died. While the greatest number of cases has occurred in Saudi Arabia, the recent export of MERS-coronavirus (MERS-CoV) to Republic of Korea showed that a pandemic is a possibility that cannot be ignored. Due to the deficit of knowledge in transmission methodology, targeted treatment and possible vaccines, understanding this virus should be a priority. Our aim was to combine epidemiological data from literature with genetic information from viruses sequenced around the world to present a phylodynamic picture of MERS spread molecular level to global scale.</AbstractText><AbstractText Label="Methods" NlmCategory="UNASSIGNED">We performed a qualitative meta-analysis of all laboratory confirmed cases worldwide to date based on literature, with emphasis on international transmission and healthcare associated infections. In parallel, we used publicly available MERS-CoV genomes from GenBank to create a phylogeographic tree, detailing geospatial timeline of viral evolution.</AbstractText><AbstractText Label="Results" NlmCategory="UNASSIGNED">Several healthcare associated outbreaks starting with the retrospectively identified hospital outbreak in Jordan to the most recent outbreak in Riyadh, Saudi Arabia have occurred. MERS has also crossed many oceans, entering multiple nations in eight waves between 2012 and 2015. In this paper, the spatiotemporal history of MERS cases, as documented epidemiologically, was examined by Bayesian phylogenetic analysis. Distribution of sequences into geographic clusters and interleaving of MERS-CoV sequences from camels among those isolated from humans indicated that multiple zoonotic introductions occurred in endemic nations. We also report a summary of basic reproduction numbers for MERS-CoV in humans and camels.</AbstractText><AbstractText Label="Conclusion" NlmCategory="UNASSIGNED">Together, these analyses can help us identify factors associated with viral evolution and spread as well as establish efficacy of infection control measures. The results are especially pertinent to countries without current MERS-CoV endemic, since their unfamiliarity makes them particularly susceptible to uncontrollable spread of a virus that may be imported by travelers.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Min</LastName><ForeName>Jae</ForeName><Initials>J</Initials><Identifier Source="ORCID">0000-0003-4112-9583</Identifier><AffiliationInfo><Affiliation>Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, 2004 Mowry Rd, Gainesville, FL 32610-0231 USA.</Affiliation><Identifier Source="GRID">grid.15276.37</Identifier><Identifier Source="ISNI">0000000419368091</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cella</LastName><ForeName>Eleonora</ForeName><Initials>E</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome, Italy.</Affiliation><Identifier Source="GRID">grid.416651.1</Identifier><Identifier Source="ISNI">0000000091206856</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>Department of Public Health and Infectious Diseases, Sapienza University of Rome, Piazzale Aldo Moro, 5, 00185 Rome, Italy.</Affiliation><Identifier Source="GRID">grid.7841.a</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>Department of Pathology, Immunology and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, 2055 Mowry Rd, Gainesville, FL 32611 USA.</Affiliation><Identifier Source="GRID">grid.15276.37</Identifier><Identifier Source="ISNI">0000000419368091</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ciccozzi</LastName><ForeName>Massimo</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome, Italy.</Affiliation><Identifier Source="GRID">grid.416651.1</Identifier><Identifier Source="ISNI">0000000091206856</Identifier></AffiliationInfo><AffiliationInfo><Affiliation>Department of Clinical Pathology and Microbiology Laboratory, University of Biomedical Campus, Via Alvaro del Portillo, 21, Rome, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pelosi</LastName><ForeName>Antonello</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Department of Infectious, Parasitic and Immune-mediated Diseases, National Institute of Health, Viale Regina Elena, 299, 00161 Rome, Italy.</Affiliation><Identifier Source="GRID">grid.416651.1</Identifier><Identifier Source="ISNI">0000000091206856</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Salemi</LastName><ForeName>Marco</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Pathology, Immunology and Laboratory Medicine, Emerging Pathogens Institute, University of Florida, 2055 Mowry Rd, Gainesville, FL 32611 USA.</Affiliation><Identifier Source="GRID">grid.15276.37</Identifier><Identifier Source="ISNI">0000000419368091</Identifier></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prosperi</LastName><ForeName>Mattia</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Department of Epidemiology, College of Public Health & Health Professions and College of Medicine, University of Florida, 2004 Mowry Rd, Gainesville, FL 32610-0231 USA.</Affiliation><Identifier Source="GRID">grid.15276.37</Identifier><Identifier Source="ISNI">0000000419368091</Identifier></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>09</Month><Day>28</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Glob Health Res 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IdType="pubmed">24585737</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Italie</li><li>États-Unis</li></country><region><li>Floride</li><li>Latium</li></region><settlement><li>Rome</li></settlement></list><tree><country name="États-Unis"><region name="Floride"><name sortKey="Min, Jae" sort="Min, Jae" uniqKey="Min J" first="Jae" last="Min">Jae Min</name></region><name sortKey="Prosperi, Mattia" sort="Prosperi, Mattia" uniqKey="Prosperi M" first="Mattia" last="Prosperi">Mattia Prosperi</name><name sortKey="Salemi, Marco" sort="Salemi, Marco" uniqKey="Salemi M" first="Marco" last="Salemi">Marco Salemi</name></country><country name="Italie"><region name="Latium"><name sortKey="Cella, Eleonora" sort="Cella, Eleonora" uniqKey="Cella E" first="Eleonora" last="Cella">Eleonora Cella</name></region><name sortKey="Ciccozzi, Massimo" sort="Ciccozzi, Massimo" uniqKey="Ciccozzi M" first="Massimo" last="Ciccozzi">Massimo Ciccozzi</name><name sortKey="Pelosi, Antonello" sort="Pelosi, Antonello" uniqKey="Pelosi A" first="Antonello" last="Pelosi">Antonello Pelosi</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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