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Zoonotic origins of human coronaviruses

Identifieur interne : 001348 ( Pmc/Curation ); précédent : 001347; suivant : 001349

Zoonotic origins of human coronaviruses

Auteurs : Zi-Wei Ye [Hong Kong] ; Shuofeng Yuan [Hong Kong] ; Kit-San Yuen [Hong Kong] ; Sin-Yee Fung [Hong Kong] ; Chi-Ping Chan [Hong Kong] ; Dong-Yan Jin [Hong Kong]

Source :

RBID : PMC:7098031

Abstract

Mutation and adaptation have driven the co-evolution of coronaviruses (CoVs) and their hosts, including human beings, for thousands of years. Before 2003, two human CoVs (HCoVs) were known to cause mild illness, such as common cold. The outbreaks of severe acute respiratory syndrome (SARS) and the Middle East respiratory syndrome (MERS) have flipped the coin to reveal how devastating and life-threatening an HCoV infection could be. The emergence of SARS-CoV-2 in central China at the end of 2019 has thrusted CoVs into the spotlight again and surprised us with its high transmissibility but reduced pathogenicity compared to its sister SARS-CoV. HCoV infection is a zoonosis and understanding the zoonotic origins of HCoVs would serve us well. Most HCoVs originated from bats where they are non-pathogenic. The intermediate reservoir hosts of some HCoVs are also known. Identifying the animal hosts has direct implications in the prevention of human diseases. Investigating CoV-host interactions in animals might also derive important insight on CoV pathogenesis in humans. In this review, we present an overview of the existing knowledge about the seven HCoVs, with a focus on the history of their discovery as well as their zoonotic origins and interspecies transmission. Importantly, we compare and contrast the different HCoVs from a perspective of virus evolution and genome recombination. The current CoV disease 2019 (COVID-19) epidemic is discussed in this context. In addition, the requirements for successful host switches and the implications of virus evolution on disease severity are also highlighted.


Url:
DOI: 10.7150/ijbs.45472
PubMed: 32226286
PubMed Central: 7098031

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PMC:7098031

Le document en format XML

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</TEI>
<pmc article-type="review-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Int J Biol Sci</journal-id>
<journal-id journal-id-type="iso-abbrev">Int. J. Biol. Sci</journal-id>
<journal-id journal-id-type="publisher-id">ijbs</journal-id>
<journal-title-group>
<journal-title>International Journal of Biological Sciences</journal-title>
</journal-title-group>
<issn pub-type="epub">1449-2288</issn>
<publisher>
<publisher-name>Ivyspring International Publisher</publisher-name>
<publisher-loc>Sydney</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">32226286</article-id>
<article-id pub-id-type="pmc">7098031</article-id>
<article-id pub-id-type="doi">10.7150/ijbs.45472</article-id>
<article-id pub-id-type="publisher-id">ijbsv16p1686</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Review</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Zoonotic origins of human coronaviruses</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Ye</surname>
<given-names>Zi-Wei</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yuan</surname>
<given-names>Shuofeng</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yuen</surname>
<given-names>Kit-San</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fung</surname>
<given-names>Sin-Yee</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chan</surname>
<given-names>Chi-Ping</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jin</surname>
<given-names>Dong-Yan</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="corresp" rid="FNA_envelop"></xref>
</contrib>
</contrib-group>
<aff id="A1">
<label>1</label>
Department of Microbiology, The University of Hong Kong, Pokfulam, Hong Kong.</aff>
<aff id="A2">
<label>2</label>
School of Biomedical Sciences, The University of Hong Kong, Pokfulam, Hong Kong.</aff>
<author-notes>
<corresp id="FNA_envelop">✉ Corresponding author: Dong-Yan Jin. E-mail:
<email>dyjin@hku.hk</email>
. School of Biomedical Sciences, 3/F Laboratory Block, 21 Sassoon Road, Pokfulam, Hong Kong.</corresp>
<fn fn-type="COI-statement">
<p>Competing Interests: The authors have declared that no competing interest exists.</p>
</fn>
</author-notes>
<pub-date pub-type="collection">
<year>2020</year>
</pub-date>
<pub-date pub-type="epub">
<day>15</day>
<month>3</month>
<year>2020</year>
</pub-date>
<volume>16</volume>
<issue>10</issue>
<fpage>1686</fpage>
<lpage>1697</lpage>
<history>
<date date-type="received">
<day>29</day>
<month>2</month>
<year>2020</year>
</date>
<date date-type="accepted">
<day>3</day>
<month>3</month>
<year>2020</year>
</date>
</history>
<permissions>
<copyright-statement>© The author(s)</copyright-statement>
<copyright-year>2020</copyright-year>
<license license-type="open-access">
<license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (
<ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link>
). See
<ext-link ext-link-type="uri" xlink:href="http://ivyspring.com/terms">http://ivyspring.com/terms</ext-link>
for full terms and conditions.</license-p>
</license>
</permissions>
<abstract>
<p>Mutation and adaptation have driven the co-evolution of coronaviruses (CoVs) and their hosts, including human beings, for thousands of years. Before 2003, two human CoVs (HCoVs) were known to cause mild illness, such as common cold. The outbreaks of severe acute respiratory syndrome (SARS) and the Middle East respiratory syndrome (MERS) have flipped the coin to reveal how devastating and life-threatening an HCoV infection could be. The emergence of SARS-CoV-2 in central China at the end of 2019 has thrusted CoVs into the spotlight again and surprised us with its high transmissibility but reduced pathogenicity compared to its sister SARS-CoV. HCoV infection is a zoonosis and understanding the zoonotic origins of HCoVs would serve us well. Most HCoVs originated from bats where they are non-pathogenic. The intermediate reservoir hosts of some HCoVs are also known. Identifying the animal hosts has direct implications in the prevention of human diseases. Investigating CoV-host interactions in animals might also derive important insight on CoV pathogenesis in humans. In this review, we present an overview of the existing knowledge about the seven HCoVs, with a focus on the history of their discovery as well as their zoonotic origins and interspecies transmission. Importantly, we compare and contrast the different HCoVs from a perspective of virus evolution and genome recombination. The current CoV disease 2019 (COVID-19) epidemic is discussed in this context. In addition, the requirements for successful host switches and the implications of virus evolution on disease severity are also highlighted.</p>
</abstract>
<kwd-group>
<kwd>coronavirus</kwd>
<kwd>SARS-CoV</kwd>
<kwd>SARS-CoV-2</kwd>
<kwd>MERS-CoV</kwd>
<kwd>COVID-19</kwd>
<kwd>animal reservoir</kwd>
<kwd>bats</kwd>
</kwd-group>
</article-meta>
</front>
<floats-group>
<fig id="F1" position="float">
<label>Figure 1</label>
<caption>
<p>
<bold> Animal hosts of HCoVs.</bold>
Blue, green, purple, red, orange, grey, brown arrows represent the transmission of HCoV-NL63, HCoV-229E, SARS-CoV, MERS-CoV, SARS-CoV-2, HCoV-OC43 and HCoV-HKU1 from their natural hosts (bats or rodents) to the intermediate hosts (camelids, civets, dromedary camels, pangolins or bovines), and eventually to the human population. No concrete evidence exists on the intermediated host(s) of HCoV-NL63 and HCoV-HKU1, which was shown as a question mark (?).</p>
</caption>
<graphic xlink:href="ijbsv16p1686g001"></graphic>
</fig>
<table-wrap id="T1" position="float">
<label>Table 1</label>
<caption>
<p>Comparison of clinical features and transmission routes of HCoVs</p>
</caption>
<table frame="hsides" rules="groups">
<thead valign="top">
<tr>
<th rowspan="1" colspan="1"></th>
<th rowspan="1" colspan="1">HCoV-229E</th>
<th rowspan="1" colspan="1">HCoV-OC43</th>
<th rowspan="1" colspan="1">SARS-CoV</th>
<th rowspan="1" colspan="1">HCoV-NL63</th>
<th rowspan="1" colspan="1">HCoV-HKU1</th>
<th rowspan="1" colspan="1">MERS-CoV</th>
<th rowspan="1" colspan="1">SARS-CoV-2</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="1" colspan="1">Classification</td>
<td rowspan="1" colspan="1">alpha-CoV</td>
<td rowspan="1" colspan="1">beta-CoV, lineage A</td>
<td rowspan="1" colspan="1">beta-CoV, lineage B</td>
<td rowspan="1" colspan="1">alpha-CoV</td>
<td rowspan="1" colspan="1">beta-CoV, lineage A</td>
<td rowspan="1" colspan="1">beta-CoV, lineage C</td>
<td rowspan="1" colspan="1">beta-CoV, lineage B</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Incubation period</td>
<td rowspan="1" colspan="1">2-5 days</td>
<td rowspan="1" colspan="1">2-5 days</td>
<td rowspan="1" colspan="1">2-11 days</td>
<td rowspan="1" colspan="1">2-4 days</td>
<td rowspan="1" colspan="1">2-4 days</td>
<td rowspan="1" colspan="1">2-13 days</td>
<td rowspan="1" colspan="1">3-6 days</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Transmission</td>
<td rowspan="1" colspan="1">Respiratory droplets Fomites</td>
<td rowspan="1" colspan="1">Respiratory droplets Fomites</td>
<td rowspan="1" colspan="1">Respiratory droplets Fomites
<break></break>
Fecal-oral</td>
<td rowspan="1" colspan="1">Respiratory droplets
<break></break>
Fomites</td>
<td rowspan="1" colspan="1">Respiratory droplets Fomites</td>
<td rowspan="1" colspan="1">Respiratory droplets Fomites</td>
<td rowspan="1" colspan="1">Respiratory droplets Fomites
<break></break>
Fecal-oral</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Case fatality</td>
<td rowspan="1" colspan="1">N/A</td>
<td rowspan="1" colspan="1">N/A</td>
<td rowspan="1" colspan="1">9.6%</td>
<td rowspan="1" colspan="1">N/A</td>
<td rowspan="1" colspan="1">N/A</td>
<td rowspan="1" colspan="1">34.4%</td>
<td rowspan="1" colspan="1">3.5%</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Clinical symptoms</td>
<td rowspan="1" colspan="1">Malaise
<break></break>
Headache
<break></break>
Nasal discharge
<break></break>
Sneezing
<break></break>
Sore throat
<break></break>
Fever and cough</td>
<td rowspan="1" colspan="1">Malaise
<break></break>
Headache
<break></break>
Nasal discharge
<break></break>
Sneezing
<break></break>
Sore throat
<break></break>
Fever and cough</td>
<td rowspan="1" colspan="1">Fever
<break></break>
Myalgia
<break></break>
Headache
<break></break>
Malaise
<break></break>
Dry cough
<break></break>
Dyspnea
<break></break>
Respiratory distress
<break></break>
Diarrhea</td>
<td rowspan="1" colspan="1">Cough
<break></break>
Rhinorrhea Tachypnea
<break></break>
Fever
<break></break>
Hypoxia
<break></break>
Croup</td>
<td rowspan="1" colspan="1">Fever
<break></break>
Running nose
<break></break>
Cough
<break></break>
Dyspnea</td>
<td rowspan="1" colspan="1">Fever
<break></break>
Cough
<break></break>
Chills
<break></break>
Sore throat
<break></break>
Myalgia
<break></break>
Arthralgia
<break></break>
Dyspnea
<break></break>
Pneumonia
<break></break>
Diarrhea and vomiting
<break></break>
Acute renal impairment</td>
<td rowspan="1" colspan="1">Fever
<break></break>
Dry cough
<break></break>
Dyspnea
<break></break>
Myalgia
<break></break>
Headache
<break></break>
Diarrhea</td>
</tr>
<tr>
<td rowspan="1" colspan="1">Epidemiology</td>
<td rowspan="1" colspan="1">Globally
<break></break>
Peak in winter</td>
<td rowspan="1" colspan="1">Globally
<break></break>
Peak in winter</td>
<td rowspan="1" colspan="1">2002-2003 in China
<break></break>
Globally thereafter</td>
<td rowspan="1" colspan="1">Globally
<break></break>
Peak in winter</td>
<td rowspan="1" colspan="1">Globally
<break></break>
Peak in winter</td>
<td rowspan="1" colspan="1">2012 in Middle East
<break></break>
2015 in South Korea
<break></break>
Endemic in Middle East</td>
<td rowspan="1" colspan="1">2019-2020 in China
<break></break>
Globally thereafter</td>
</tr>
<tr>
<td rowspan="1" colspan="1">References</td>
<td rowspan="1" colspan="1">27-30</td>
<td rowspan="1" colspan="1">28</td>
<td rowspan="1" colspan="1">14, 15, 31</td>
<td rowspan="1" colspan="1">32-35</td>
<td rowspan="1" colspan="1">36, 37</td>
<td rowspan="1" colspan="1">17, 18, 39</td>
<td rowspan="1" colspan="1">40</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap id="T2" position="float">
<label>Table 2</label>
<caption>
<p>Animal origins of HCoVs</p>
</caption>
<table frame="hsides" rules="groups">
<thead valign="top">
<tr>
<th rowspan="1" colspan="1">HCoV</th>
<th rowspan="1" colspan="1">Natural host</th>
<th rowspan="1" colspan="1">Intermediate host</th>
<th rowspan="1" colspan="1">References</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td rowspan="1" colspan="1">HCoV-229E</td>
<td rowspan="1" colspan="1">Bats</td>
<td rowspan="1" colspan="1">Camelids?</td>
<td rowspan="1" colspan="1">65-67</td>
</tr>
<tr>
<td rowspan="1" colspan="1">HCoV-OC43</td>
<td rowspan="1" colspan="1">Rodents</td>
<td rowspan="1" colspan="1">Bovines</td>
<td rowspan="1" colspan="1">9</td>
</tr>
<tr>
<td rowspan="1" colspan="1">SARS-CoV</td>
<td rowspan="1" colspan="1">Bats</td>
<td rowspan="1" colspan="1">Palm civets</td>
<td rowspan="1" colspan="1">7, 37, 42-48</td>
</tr>
<tr>
<td rowspan="1" colspan="1">HCoV-NL63</td>
<td rowspan="1" colspan="1">Bats</td>
<td rowspan="1" colspan="1">Unidentified</td>
<td rowspan="1" colspan="1">62, 63</td>
</tr>
<tr>
<td rowspan="1" colspan="1">HCoV-HKU1</td>
<td rowspan="1" colspan="1">Rodents</td>
<td rowspan="1" colspan="1">Unidentified</td>
<td rowspan="1" colspan="1">9</td>
</tr>
<tr>
<td rowspan="1" colspan="1">MERS-CoV</td>
<td rowspan="1" colspan="1">Bats</td>
<td rowspan="1" colspan="1">Dromedary camels</td>
<td rowspan="1" colspan="1">49-58</td>
</tr>
<tr>
<td rowspan="1" colspan="1">SARS-CoV-2</td>
<td rowspan="1" colspan="1">Bats</td>
<td rowspan="1" colspan="1">Pangolins?</td>
<td rowspan="1" colspan="1">8, 59</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
</record>

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