SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world☆
Identifieur interne : 001185 ( Pmc/Curation ); précédent : 001184; suivant : 001186SARS-CoV related Betacoronavirus and diverse Alphacoronavirus members found in western old-world☆
Auteurs : Meriadeg Ar Gouilh [France] ; Sébastien J. Puechmaille [Allemagne, Irlande (pays), France] ; Laure Diancourt [France] ; Mathias Vandenbogaert [France] ; Jordi Serra-Cobo [Espagne] ; Marc Lopez Roïg [Espagne] ; Paul Brown [France] ; François Moutou [France] ; Valérie Caro [France] ; Astrid Vabret [France] ; Jean-Claude Manuguerra [France]Source :
- Virology [ 0042-6822 ] ; 2018.
Abstract
The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related
Url:
DOI: 10.1016/j.virol.2018.01.014
PubMed: 29482919
PubMed Central: 7112086
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France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Normandie Université, EA2656, Groupe de Recherche sur l’Adaptation Microbienne, 14000, Caen</wicri:regionArea></affiliation></author><author><name sortKey="Manuguerra, Jean Claude" sort="Manuguerra, Jean Claude" uniqKey="Manuguerra J" first="Jean-Claude" last="Manuguerra">Jean-Claude Manuguerra</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">29482919</idno><idno type="pmc">7112086</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7112086</idno><idno 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France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff0035">Normandie Université, EA2656, Groupe de Recherche sur l’Adaptation Microbienne, 14000, Caen, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Normandie Université, EA2656, Groupe de Recherche sur l’Adaptation Microbienne, 14000, Caen</wicri:regionArea></affiliation></author><author><name sortKey="Puechmaille, Sebastien J" sort="Puechmaille, Sebastien J" uniqKey="Puechmaille S" first="Sébastien J." last="Puechmaille">Sébastien J. Puechmaille</name><affiliation wicri:level="1"><nlm:aff id="aff0010">Greifswald University, 17489, Greifswald, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Greifswald University, 17489, Greifswald</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff0015">University College Dublin, Belfield, Dublin 4, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>University College Dublin, Belfield, Dublin 4</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="aff0020">Chauves-souris Aveyron, 12310, Vimenet, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Chauves-souris Aveyron, 12310, Vimenet</wicri:regionArea></affiliation></author><author><name sortKey="Diancourt, Laure" sort="Diancourt, Laure" uniqKey="Diancourt L" first="Laure" last="Diancourt">Laure Diancourt</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea></affiliation></author><author><name sortKey="Vandenbogaert, Mathias" sort="Vandenbogaert, Mathias" uniqKey="Vandenbogaert M" first="Mathias" last="Vandenbogaert">Mathias Vandenbogaert</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea></affiliation></author><author><name sortKey="Serra Cobo, Jordi" sort="Serra Cobo, Jordi" uniqKey="Serra Cobo J" first="Jordi" last="Serra-Cobo">Jordi Serra-Cobo</name><affiliation wicri:level="1"><nlm:aff id="aff0025">IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona</wicri:regionArea></affiliation></author><author><name sortKey="Lopez Roig, Marc" sort="Lopez Roig, Marc" uniqKey="Lopez Roig M" first="Marc" last="Lopez Roïg">Marc Lopez Roïg</name><affiliation wicri:level="1"><nlm:aff id="aff0025">IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain</nlm:aff><country xml:lang="fr">Espagne</country><wicri:regionArea>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona</wicri:regionArea></affiliation></author><author><name sortKey="Brown, Paul" sort="Brown, Paul" uniqKey="Brown P" first="Paul" last="Brown">Paul Brown</name><affiliation wicri:level="1"><nlm:aff id="aff0040">French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan</wicri:regionArea></affiliation></author><author><name sortKey="Moutou, Francois" sort="Moutou, Francois" uniqKey="Moutou F" first="François" last="Moutou">François Moutou</name><affiliation wicri:level="1"><nlm:aff id="aff0030">Ecole Nationale Vétérinaire d’Alfort, 94704, Maison-Alfort, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Ecole Nationale Vétérinaire d’Alfort, 94704, Maison-Alfort</wicri:regionArea></affiliation></author><author><name sortKey="Caro, Valerie" sort="Caro, Valerie" uniqKey="Caro V" first="Valérie" last="Caro">Valérie Caro</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea></affiliation></author><author><name sortKey="Vabret, Astrid" sort="Vabret, Astrid" uniqKey="Vabret A" first="Astrid" last="Vabret">Astrid Vabret</name><affiliation wicri:level="1"><nlm:aff id="aff0035">Normandie Université, EA2656, Groupe de Recherche sur l’Adaptation Microbienne, 14000, Caen, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Normandie Université, EA2656, Groupe de Recherche sur l’Adaptation Microbienne, 14000, Caen</wicri:regionArea></affiliation></author><author><name sortKey="Manuguerra, Jean Claude" sort="Manuguerra, Jean Claude" uniqKey="Manuguerra J" first="Jean-Claude" last="Manuguerra">Jean-Claude Manuguerra</name><affiliation wicri:level="1"><nlm:aff id="aff0005">Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris</wicri:regionArea></affiliation></author></analytic><series><title level="j">Virology</title><idno type="ISSN">0042-6822</idno><idno type="eISSN">1096-0341</idno><imprint><date when="2018">2018</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related <italic>Betacoronavirus</italic> in <italic>Rhinolophus ferrumequinum</italic> were identified. The diversity and prevalence of bat coronaviruses presently reported from western Europe is much higher than previously described and includes a SARS-CoV sister group. This diversity demonstrates the dynamic evolution and circulation of coronaviruses in this species. That said, the identified coronaviruses were consistently associated with a particular bat species or genus, and these relationships were maintained no matter the geographic location. The observed phylogenetic grouping of coronaviruses from the same species in Europe and Asia, emphasizes the role of host/pathogen coevolution in this group.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Balboni, A" uniqKey="Balboni A">A. Balboni</name></author><author><name sortKey="Battilani, M" uniqKey="Battilani M">M. Battilani</name></author><author><name sortKey="Prosperi, S" uniqKey="Prosperi S">S. Prosperi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Barataud, M" uniqKey="Barataud M">M. Barataud</name></author><author><name sortKey="Aulagnier, S" uniqKey="Aulagnier S">S. Aulagnier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bermingham, A" uniqKey="Bermingham A">A. Bermingham</name></author><author><name sortKey="Chand, M A" uniqKey="Chand M">M.A. Chand</name></author><author><name sortKey="Brown, C S" uniqKey="Brown C">C.S. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Virology</journal-id><journal-id journal-id-type="iso-abbrev">Virology</journal-id><journal-title-group><journal-title>Virology</journal-title></journal-title-group><issn pub-type="ppub">0042-6822</issn><issn pub-type="epub">1096-0341</issn><publisher><publisher-name>Elsevier Inc.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">29482919</article-id><article-id pub-id-type="pmc">7112086</article-id><article-id pub-id-type="publisher-id">S0042-6822(18)30020-5</article-id><article-id pub-id-type="doi">10.1016/j.virol.2018.01.014</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>SARS-CoV related <italic>Betacoronavirus</italic> and diverse <italic>Alphacoronavirus</italic> members found in western old-world<sup><xref ref-type="fn" rid="d32e3012">☆</xref></sup></article-title></title-group><contrib-group><contrib contrib-type="author" id="au0005"><name><surname>Ar Gouilh</surname><given-names>Meriadeg</given-names></name><email>meriadeg.le-gouil@pasteur.fr</email><email>meriadeg.legouil@normandie-univ.fr</email><xref rid="aff0005" ref-type="aff">a</xref><xref rid="aff0035" ref-type="aff">g</xref><xref rid="cor1" ref-type="corresp">⁎</xref></contrib><contrib contrib-type="author" id="au0010"><name><surname>Puechmaille</surname><given-names>Sébastien J.</given-names></name><xref rid="aff0010" ref-type="aff">b</xref><xref rid="aff0015" ref-type="aff">c</xref><xref rid="aff0020" ref-type="aff">d</xref></contrib><contrib contrib-type="author" id="au0015"><name><surname>Diancourt</surname><given-names>Laure</given-names></name><xref rid="aff0005" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0020"><name><surname>Vandenbogaert</surname><given-names>Mathias</given-names></name><xref rid="aff0005" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0025"><name><surname>Serra-Cobo</surname><given-names>Jordi</given-names></name><xref rid="aff0025" ref-type="aff">e</xref></contrib><contrib contrib-type="author" id="au0030"><name><surname>Lopez Roïg</surname><given-names>Marc</given-names></name><xref rid="aff0025" ref-type="aff">e</xref></contrib><contrib contrib-type="author" id="au0035"><name><surname>Brown</surname><given-names>Paul</given-names></name><xref rid="aff0040" ref-type="aff">h</xref></contrib><contrib contrib-type="author" id="au0040"><name><surname>Moutou</surname><given-names>François</given-names></name><xref rid="aff0030" ref-type="aff">f</xref><xref rid="fn1" ref-type="fn">1</xref></contrib><contrib contrib-type="author" id="au0045"><name><surname>Caro</surname><given-names>Valérie</given-names></name><xref rid="aff0005" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0050"><name><surname>Vabret</surname><given-names>Astrid</given-names></name><xref rid="aff0035" ref-type="aff">g</xref></contrib><contrib contrib-type="author" id="au0055"><name><surname>Manuguerra</surname><given-names>Jean-Claude</given-names></name><xref rid="aff0005" ref-type="aff">a</xref></contrib><contrib contrib-type="author"><collab><on-behalf-of>on behalf of the EPICOREM consortium</on-behalf-of></collab><xref rid="fn2" ref-type="fn">2</xref></contrib></contrib-group><aff id="aff0005"><label>a</label>Institut Pasteur, Unité Environnement et Risques Infectieux, CIBU, Infection et Epidemiologie, 75015, Paris, France</aff><aff id="aff0010"><label>b</label>Greifswald University, 17489, Greifswald, Germany</aff><aff id="aff0015"><label>c</label>University College Dublin, Belfield, Dublin 4, Ireland</aff><aff id="aff0020"><label>d</label>Chauves-souris Aveyron, 12310, Vimenet, France</aff><aff id="aff0025"><label>e</label>IRBIO & Departament de de Biologia Evolutiva, Ecologia i Ciències Ambientals, Facultat de Biologia, Universitat de Barcelona, 08028, Barcelona, Spain</aff><aff id="aff0030"><label>f</label>Ecole Nationale Vétérinaire d’Alfort, 94704, Maison-Alfort, France</aff><aff id="aff0035"><label>g</label>Normandie Université, EA2656, Groupe de Recherche sur l’Adaptation Microbienne, 14000, Caen, France</aff><aff id="aff0040"><label>h</label>French Agency for Food, Environmental and Occupational Health Safety (ANSES), Avian and Rabbit Virology Immunology and Parasitology Unit (VIPAC), Université Européenne de Bretagne, Ploufragan/Plouzané laboratory, 22440, Ploufragan, France</aff><author-notes><corresp id="cor1"><label>⁎</label>Correspondence to: GRAM - Groupe de Recherche sur l'Adaptation Microbienne, EA 2656 UNICAEN / UNIROUEN, Université de Normandie, Laboratoire de Virologie, CHU de Caen, CNR ROR - Centre National de Référence pour les Virus de la Rougeole, Rubéole et Oreillons, Av. Georges Clémenceau, 14033 Caen, Cedex, France. <email>meriadeg.le-gouil@pasteur.fr</email><email>meriadeg.legouil@normandie-univ.fr</email></corresp><fn id="fn1"><label>1</label><p id="ntp0020">Retired.</p></fn><fn id="fn2"><label>2</label><p id="ntp0025">Membership of the EPICOREM Consortium can be found here: <ext-link ext-link-type="uri" xlink:href="http://coronavirus.fr" id="ir0015">http://coronavirus.fr</ext-link>.</p></fn></author-notes><pub-date pub-type="pmc-release"><day>23</day><month>2</month><year>2018</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub"><month>4</month><year>2018</year></pub-date><pub-date pub-type="epub"><day>23</day><month>2</month><year>2018</year></pub-date><volume>517</volume><fpage>88</fpage><lpage>97</lpage><history><date date-type="received"><day>9</day><month>10</month><year>2017</year></date><date date-type="rev-recd"><day>22</day><month>12</month><year>2017</year></date><date date-type="accepted"><day>18</day><month>1</month><year>2018</year></date></history><permissions><copyright-statement>© 2018 Elsevier Inc.</copyright-statement><copyright-year>2018</copyright-year><copyright-holder>Elsevier Inc.</copyright-holder><license><license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p></license></permissions><abstract id="ab0010"><p>The emergence of SARS-CoV and MERS-CoV, triggered the discovery of a high diversity of coronaviruses in bats. Studies from Europe have shown that coronaviruses circulate in bats in France but this reflects only a fraction of the whole diversity. In the current study the diversity of coronaviruses circulating in western Europe was extensively explored. Ten alphacoronaviruses in eleven bat species belonging to the Miniopteridae, Vespertilionidae and Rhinolophidae families and, a SARS-CoV-related <italic>Betacoronavirus</italic> in <italic>Rhinolophus ferrumequinum</italic> were identified. The diversity and prevalence of bat coronaviruses presently reported from western Europe is much higher than previously described and includes a SARS-CoV sister group. This diversity demonstrates the dynamic evolution and circulation of coronaviruses in this species. That said, the identified coronaviruses were consistently associated with a particular bat species or genus, and these relationships were maintained no matter the geographic location. The observed phylogenetic grouping of coronaviruses from the same species in Europe and Asia, emphasizes the role of host/pathogen coevolution in this group.</p></abstract><abstract abstract-type="graphical" id="ab0015"><title>Graphical abstract</title><p><fig id="f0015" position="anchor"><alt-text id="at0020">fx1</alt-text><graphic xlink:href="fx1_lrg"></graphic></fig></p></abstract><abstract abstract-type="author-highlights" id="ab0020"><title>Highlights</title><p><list list-type="simple" id="li0005"><list-item id="u0005"><label>•</label><p id="p0005">A SARS-CoV sister clade member, <italic>Betacoronavirus</italic> EPI1<italic>,</italic> found in Western Europe.</p></list-item><list-item id="u0010"><label>•</label><p id="p0010"><italic>Betacoronavirus</italic> EPI1 circulates in <italic>Rhinolophus ferrumequinum</italic> bat in Western Europe.</p></list-item><list-item id="u0015"><label>•</label><p id="p0015">9 alphacoronaviruses species found in Vespertillionidae and Miniopteridae bats.</p></list-item><list-item id="u0020"><label>•</label><p id="p0020"><italic>Rhinolophus ferrumequinum</italic> hosts Betacov EPI1 and Alphacov EPI4, EPI6 and EPI7.</p></list-item><list-item id="u0025"><label>•</label><p id="p0025"><italic>Alphacoronavirus</italic> EPI6 is strictly associated with <italic>Rhinolophus ferrumequinum.</italic></p></list-item></list></p></abstract><kwd-group id="keys0005"><title>Keywords</title><kwd>Coronavirus</kwd><kwd>Bats</kwd><kwd>Europe</kwd><kwd>Emergence</kwd><kwd>SARS-CoV</kwd><kwd>MERS-CoV</kwd><kwd>Chiroptera</kwd><kwd>Evolution</kwd><kwd>Phylogenetics</kwd><kwd>Diversity</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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