Homology-Aware Phylogenomics at Gigabase Scales
Identifieur interne : 001148 ( Pmc/Curation ); précédent : 001147; suivant : 001149Homology-Aware Phylogenomics at Gigabase Scales
Auteurs : M. J. Sanderson ; Marius Nicolae ; M. M. McmahonSource :
- Systematic Biology [ 1063-5157 ] ; 2017.
Abstract
Obstacles to inferring species trees from whole genome data sets range from algorithmic
and data management challenges to the wholesale discordance in evolutionary history found
in different parts of a genome. Recent work that builds trees directly from genomes by
parsing them into sets of small
Url:
DOI: 10.1093/sysbio/syw104
PubMed: 28123115
PubMed Central: 5790135
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Homology-Aware Phylogenomics at Gigabase Scales</title><author><name sortKey="Sanderson, M J" sort="Sanderson, M J" uniqKey="Sanderson M" first="M. J." last="Sanderson">M. J. Sanderson</name><affiliation><nlm:aff id="AFF1"><italic>Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA</italic></nlm:aff></affiliation></author><author><name sortKey="Nicolae, Marius" sort="Nicolae, Marius" uniqKey="Nicolae M" first="Marius" last="Nicolae">Marius Nicolae</name><affiliation><nlm:aff id="AFF2"><italic>Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269, USA</italic></nlm:aff></affiliation></author><author><name sortKey="Mcmahon, M M" sort="Mcmahon, M M" uniqKey="Mcmahon M" first="M. M." last="Mcmahon">M. M. Mcmahon</name><affiliation><nlm:aff id="AFF3"><italic>School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA</italic></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">28123115</idno><idno type="pmc">5790135</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5790135</idno><idno type="RBID">PMC:5790135</idno><idno type="doi">10.1093/sysbio/syw104</idno><date when="2017">2017</date><idno type="wicri:Area/Pmc/Corpus">001148</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001148</idno><idno type="wicri:Area/Pmc/Curation">001148</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001148</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Homology-Aware Phylogenomics at Gigabase Scales</title><author><name sortKey="Sanderson, M J" sort="Sanderson, M J" uniqKey="Sanderson M" first="M. J." last="Sanderson">M. J. Sanderson</name><affiliation><nlm:aff id="AFF1"><italic>Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA</italic></nlm:aff></affiliation></author><author><name sortKey="Nicolae, Marius" sort="Nicolae, Marius" uniqKey="Nicolae M" first="Marius" last="Nicolae">Marius Nicolae</name><affiliation><nlm:aff id="AFF2"><italic>Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269, USA</italic></nlm:aff></affiliation></author><author><name sortKey="Mcmahon, M M" sort="Mcmahon, M M" uniqKey="Mcmahon M" first="M. M." last="Mcmahon">M. M. Mcmahon</name><affiliation><nlm:aff id="AFF3"><italic>School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA</italic></nlm:aff></affiliation></author></analytic><series><title level="j">Systematic Biology</title><idno type="ISSN">1063-5157</idno><idno type="eISSN">1076-836X</idno><imprint><date when="2017">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><title>Abstract</title><p>Obstacles to inferring species trees from whole genome data sets range from algorithmic
and data management challenges to the wholesale discordance in evolutionary history found
in different parts of a genome. Recent work that builds trees directly from genomes by
parsing them into sets of small <inline-formula><tex-math id="M1">\documentclass[12pt]{minimal}
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}{}$k$\end{document}</tex-math></inline-formula>-mer strings holds promise
to streamline and simplify these efforts, but existing approaches do not account well for
gene tree discordance. We describe a “seed and extend” protocol that finds nearly exact
matching sets of orthologous <inline-formula><tex-math id="M2">\documentclass[12pt]{minimal}
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}{}$k$\end{document}</tex-math></inline-formula>-mers and extends them to construct data
sets that can properly account for genomic heterogeneity. Exploiting an efficient suffix
array data structure, sets of whole genomes can be parsed and converted into phylogenetic
data matrices rapidly, with contiguous blocks of <inline-formula><tex-math id="M3">\documentclass[12pt]{minimal}
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}{}$k$\end{document}</tex-math></inline-formula>-mers
from the same chromosome, gene, or scaffold concatenated as needed. Phylogenetic trees
constructed from highly curated rice genome data and a diverse set of six other eukaryotic
whole genome, transcriptome, and organellar genome data sets recovered trees nearly
identical to published phylogenomic analyses, in a small fraction of the time, and
requiring many fewer parameter choices. Our method’s ability to retain local homology
information was demonstrated by using it to characterize gene tree discordance across the
rice genome, and by its robustness to the high rate of interchromosomal gene transfer
found in several rice species.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Aberer, A J" uniqKey="Aberer A">A.J., Aberer</name></author><author><name sortKey="Krompass, D" uniqKey="Krompass D">D., Krompass</name></author><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A. Stamatakis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Altschul, S F" uniqKey="Altschul S">S.F., Altschul</name></author><author><name sortKey="Madden, T L" uniqKey="Madden T">T.L., Madden</name></author><author><name sortKey="Schaffer, A A" uniqKey="Schaffer A">A.A., Schaffer</name></author><author><name sortKey="Zhang, J" uniqKey="Zhang J">J., Zhang</name></author><author><name sortKey="Zhang, Z" uniqKey="Zhang Z">Z., Zhang</name></author><author><name sortKey="Miller, W Q" uniqKey="Miller W">W.Q., Miller</name></author><author><name sortKey="Lipman, D J" uniqKey="Lipman D">D.J. Lipman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Banks, J A" uniqKey="Banks J">J.A., Banks</name></author><author><name sortKey="Nishiyama, T" uniqKey="Nishiyama T">T., Nishiyama</name></author><author><name sortKey="Hasebe, M" uniqKey="Hasebe M">M., Hasebe</name></author><author><name sortKey="Bowman, J L" uniqKey="Bowman J">J.L., Bowman</name></author><author><name sortKey="Gribskov, M" uniqKey="Gribskov M">M., Gribskov</name></author><author><name sortKey="De Pamphilis, C" uniqKey="De Pamphilis C">C., de Pamphilis</name></author><author><name sortKey="Albert, V A" uniqKey="Albert V">V.A., Albert</name></author><author><name sortKey="Aono, N" uniqKey="Aono N">N., Aono</name></author><author><name sortKey="Aoyama, T" uniqKey="Aoyama T">T., Aoyama</name></author><author><name sortKey="Ambrose, B A" uniqKey="Ambrose B">B.A., Ambrose</name></author><author><name sortKey="Ashton, N W" uniqKey="Ashton N">N.W., Ashton</name></author><author><name sortKey="Axtell, M J" uniqKey="Axtell M">M.J., Axtell</name></author><author><name sortKey="Barker, E" uniqKey="Barker E">E., Barker</name></author><author><name sortKey="Barker, M S" uniqKey="Barker M">M.S., Barker</name></author><author><name sortKey="Bennetzen, J L" uniqKey="Bennetzen J">J.L., Bennetzen</name></author><author><name sortKey="Bonawitz, N D" uniqKey="Bonawitz N">N.D., Bonawitz</name></author><author><name sortKey="Chapple, C" uniqKey="Chapple C">C., Chapple</name></author><author><name sortKey="Cheng, C Y" uniqKey="Cheng C">C.Y., Cheng</name></author><author><name sortKey="Correa, L G G" uniqKey="Correa L">L.G.G., Correa</name></author><author><name sortKey="Dacre, M" uniqKey="Dacre M">M., Dacre</name></author><author><name sortKey="Debarry, J" uniqKey="Debarry J">J., DeBarry</name></author><author><name sortKey="Dreyer, I" uniqKey="Dreyer I">I., Dreyer</name></author><author><name sortKey="Elias, M" uniqKey="Elias M">M., Elias</name></author><author><name sortKey="Engstrom, E M" uniqKey="Engstrom E">E.M., Engstrom</name></author><author><name sortKey="Estelle, M" uniqKey="Estelle M">M., Estelle</name></author><author><name sortKey="Feng, L" uniqKey="Feng L">L., Feng</name></author><author><name sortKey="Finet, C" uniqKey="Finet C">C., Finet</name></author><author><name sortKey="Floyd, S K" uniqKey="Floyd S">S.K., Floyd</name></author><author><name sortKey="Frommer, W B" uniqKey="Frommer W">W.B., Frommer</name></author><author><name sortKey="Fujita, T" uniqKey="Fujita T">T., Fujita</name></author><author><name sortKey="Gramzow, L" uniqKey="Gramzow L">L., Gramzow</name></author><author><name sortKey="Gutensohn, M" uniqKey="Gutensohn M">M., Gutensohn</name></author><author><name sortKey="Harholt, J" uniqKey="Harholt J">J., Harholt</name></author><author><name sortKey="Hattori, M" uniqKey="Hattori M">M., Hattori</name></author><author><name sortKey="Heyl, A" uniqKey="Heyl A">A., Heyl</name></author><author><name sortKey="Hirai, T" uniqKey="Hirai T">T., Hirai</name></author><author><name sortKey="Hiwatashi, Y" uniqKey="Hiwatashi Y">Y., Hiwatashi</name></author><author><name sortKey="Ishikawa, M" uniqKey="Ishikawa M">M., Ishikawa</name></author><author><name sortKey="Iwata, M" uniqKey="Iwata M">M., Iwata</name></author><author><name sortKey="Karol, K G" uniqKey="Karol K">K.G., Karol</name></author><author><name sortKey="Koehler, B" uniqKey="Koehler B">B., Koehler</name></author><author><name sortKey="Kolukisaoglu, U" uniqKey="Kolukisaoglu U">U., Kolukisaoglu</name></author><author><name sortKey="Kubo, M" uniqKey="Kubo M">M., Kubo</name></author><author><name sortKey="Kurata, T" uniqKey="Kurata T">T., Kurata</name></author><author><name sortKey="Lalonde, S" uniqKey="Lalonde S">S., Lalonde</name></author><author><name sortKey="Li, K J" uniqKey="Li K">K.J., Li</name></author><author><name sortKey="Li, Y" uniqKey="Li Y">Y., Li</name></author><author><name sortKey="Litt, A" uniqKey="Litt A">A., Litt</name></author><author><name sortKey="Lyons, E" uniqKey="Lyons E">E., Lyons</name></author><author><name sortKey="Manning, G" uniqKey="Manning G">G., Manning</name></author><author><name sortKey="Maruyama, T" uniqKey="Maruyama T">T., Maruyama</name></author><author><name sortKey="Michael, T P" uniqKey="Michael T">T.P., Michael</name></author><author><name sortKey="Mikami, K" uniqKey="Mikami K">K., Mikami</name></author><author><name sortKey="Miyazaki, S" uniqKey="Miyazaki S">S., Miyazaki</name></author><author><name sortKey="Morinaga, S" uniqKey="Morinaga S">S., Morinaga</name></author><author><name sortKey="Murata, T" uniqKey="Murata T">T., Murata</name></author><author><name sortKey="Mueller Roeber, B" uniqKey="Mueller Roeber B">B., Mueller-Roeber</name></author><author><name sortKey="Nelson, D R" uniqKey="Nelson D">D.R., Nelson</name></author><author><name sortKey="Obara, M" uniqKey="Obara M">M., Obara</name></author><author><name sortKey="Oguri, Y" uniqKey="Oguri Y">Y., Oguri</name></author><author><name sortKey="Olmstead, R G" uniqKey="Olmstead R">R.G., Olmstead</name></author><author><name sortKey="Onodera, N" uniqKey="Onodera N">N., Onodera</name></author><author><name sortKey="Petersen, B L" uniqKey="Petersen B">B.L., Petersen</name></author><author><name sortKey="Pils, B" uniqKey="Pils B">B., Pils</name></author><author><name sortKey="Prigge, M" uniqKey="Prigge M">M., Prigge</name></author><author><name sortKey="Rensing, S A" uniqKey="Rensing S">S.A., Rensing</name></author><author><name sortKey="Riano Pachon, D M" uniqKey="Riano Pachon D">D.M., Riano-Pachon</name></author><author><name sortKey="Roberts, A W" uniqKey="Roberts A">A.W., Roberts</name></author><author><name sortKey="Sato, Y" uniqKey="Sato Y">Y., Sato</name></author><author><name sortKey="Scheller, H V" uniqKey="Scheller H">H.V., Scheller</name></author><author><name sortKey="Schulz, B" uniqKey="Schulz B">B., Schulz</name></author><author><name sortKey="Schulz, C" uniqKey="Schulz C">C., Schulz</name></author><author><name sortKey="Shakirov, E V" uniqKey="Shakirov E">E.V., Shakirov</name></author><author><name sortKey="Shibagaki, N" uniqKey="Shibagaki N">N., Shibagaki</name></author><author><name sortKey="Shinohara, N" uniqKey="Shinohara N">N., Shinohara</name></author><author><name sortKey="Shippen, D E" uniqKey="Shippen D">D.E., Shippen</name></author><author><name sortKey="Sorensen, I" uniqKey="Sorensen I">I., Sorensen</name></author><author><name sortKey="Sotooka, R" uniqKey="Sotooka R">R., Sotooka</name></author><author><name sortKey="Sugimoto, N" uniqKey="Sugimoto N">N., Sugimoto</name></author><author><name sortKey="Sugita, M" uniqKey="Sugita M">M., Sugita</name></author><author><name sortKey="Sumikawa, N" uniqKey="Sumikawa N">N., Sumikawa</name></author><author><name sortKey="Tanurdzic, M" uniqKey="Tanurdzic M">M., Tanurdzic</name></author><author><name sortKey="Theissen, G" uniqKey="Theissen G">G., Theissen</name></author><author><name sortKey="Ulvskov, P" uniqKey="Ulvskov P">P., Ulvskov</name></author><author><name sortKey="Wakazuki, S" uniqKey="Wakazuki S">S., Wakazuki</name></author><author><name sortKey="Weng, J K" uniqKey="Weng J">J.K., Weng</name></author><author><name sortKey="Willats, W" uniqKey="Willats W">W., Willats</name></author><author><name sortKey="Wipf, D" uniqKey="Wipf D">D., Wipf</name></author><author><name sortKey="Wolf, P G" uniqKey="Wolf P">P.G., Wolf</name></author><author><name sortKey="Yang, L X" uniqKey="Yang L">L.X., Yang</name></author><author><name sortKey="Zimmer, A D" uniqKey="Zimmer A">A.D., Zimmer</name></author><author><name sortKey="Zhu, Q H" uniqKey="Zhu Q">Q.H., Zhu</name></author><author><name sortKey="Mitros, T" uniqKey="Mitros T">T., Mitros</name></author><author><name sortKey="Hellsten, U" uniqKey="Hellsten U">U., Hellsten</name></author><author><name sortKey="Loque, D" uniqKey="Loque D">D., Loque</name></author><author><name sortKey="Otillar, R" uniqKey="Otillar R">R., Otillar</name></author><author><name sortKey="Salamov, A" uniqKey="Salamov A">A., Salamov</name></author><author><name sortKey="Schmutz, J" uniqKey="Schmutz J">J., Schmutz</name></author><author><name sortKey="Shapiro, H" uniqKey="Shapiro H">H., Shapiro</name></author><author><name sortKey="Lindquist, E" uniqKey="Lindquist E">E., Lindquist</name></author><author><name sortKey="Lucas, S" uniqKey="Lucas S">S., Lucas</name></author><author><name sortKey="Rokhsar, D" uniqKey="Rokhsar D">D., Rokhsar</name></author><author><name sortKey="Grigoriev, I V" uniqKey="Grigoriev I">I.V. Grigoriev</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bertels, F" uniqKey="Bertels F">F., Bertels</name></author><author><name sortKey="Silander, O K" uniqKey="Silander O">O.K., Silander</name></author><author><name sortKey="Pachkov, M" uniqKey="Pachkov M">M., Pachkov</name></author><author><name sortKey="Rainey, P B" uniqKey="Rainey P">P.B., Rainey</name></author><author><name sortKey="Van Nimwegen, E" uniqKey="Van Nimwegen E">E. van Nimwegen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bruneau, A" uniqKey="Bruneau A">A., Bruneau</name></author><author><name sortKey="Doyle, J J" uniqKey="Doyle J">J.J., Doyle</name></author><author><name sortKey="Herendeen, P" uniqKey="Herendeen P">P., Herendeen</name></author><author><name sortKey="Hughes, C" uniqKey="Hughes C">C., Hughes</name></author><author><name sortKey="Kenicer, G" uniqKey="Kenicer G">G., Kenicer</name></author><author><name sortKey="Lewis, G" uniqKey="Lewis G">G., Lewis</name></author><author><name sortKey="Mackinder, B" uniqKey="Mackinder B">B., Mackinder</name></author><author><name sortKey="Pennington, R T" uniqKey="Pennington R">R.T., Pennington</name></author><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Wojciechowski, M F" uniqKey="Wojciechowski M">M.F., Wojciechowski</name></author><author><name sortKey="Boatwright, S" uniqKey="Boatwright S">S., Boatwright</name></author><author><name sortKey="Brown, G" uniqKey="Brown G">G., Brown</name></author><author><name sortKey="Cardoso, D" uniqKey="Cardoso D">D., Cardoso</name></author><author><name sortKey="Crisp, M" uniqKey="Crisp M">M., Crisp</name></author><author><name sortKey="Egan, A" uniqKey="Egan A">A., Egan</name></author><author><name sortKey="Fortunato, R H" uniqKey="Fortunato R">R.H., Fortunato</name></author><author><name sortKey="Hawkins, J" uniqKey="Hawkins J">J., Hawkins</name></author><author><name sortKey="Kajita, T" uniqKey="Kajita T">T., Kajita</name></author><author><name sortKey="Klitgaard, B" uniqKey="Klitgaard B">B., Klitgaard</name></author><author><name sortKey="Koenen, E" uniqKey="Koenen E">E., Koenen</name></author><author><name sortKey="Lavin, M" uniqKey="Lavin M">M., Lavin</name></author><author><name sortKey="Luckow, M" uniqKey="Luckow M">M., Luckow</name></author><author><name sortKey="Marazzi, B" uniqKey="Marazzi B">B., Marazzi</name></author><author><name sortKey="Mcmahon, M M" uniqKey="Mcmahon M">M.M., McMahon</name></author><author><name sortKey="Miller, J T" uniqKey="Miller J">J.T., Miller</name></author><author><name sortKey="Murphy, D J" uniqKey="Murphy D">D.J., Murphy</name></author><author><name sortKey="Ohashi, H" uniqKey="Ohashi H">H., Ohashi</name></author><author><name sortKey="De Queiroz, L P" uniqKey="De Queiroz L">L.P., de Queiroz</name></author><author><name sortKey="Rico, L" uniqKey="Rico L">L., Rico</name></author><author><name sortKey="Sarkinen, T" uniqKey="Sarkinen T">T., Sarkinen</name></author><author><name sortKey="Schrire, B" uniqKey="Schrire B">B., Schrire</name></author><author><name sortKey="Simon, M F" uniqKey="Simon M">M.F., Simon</name></author><author><name sortKey="Souza, E R" uniqKey="Souza E">E.R., Souza</name></author><author><name sortKey="Steele, K" uniqKey="Steele K">K., Steele</name></author><author><name sortKey="Torke, B M" uniqKey="Torke B">B.M., Torke</name></author><author><name sortKey="Wieringa, J J" uniqKey="Wieringa J">J.J., Wieringa</name></author><author><name sortKey="Van Wyk, B E" uniqKey="Van Wyk B">B.E., van Wyk</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chan, C X" uniqKey="Chan C">C.X., Chan</name></author><author><name sortKey="Bernard, G" uniqKey="Bernard G">G., Bernard</name></author><author><name sortKey="Poirion, O" uniqKey="Poirion O">O., Poirion</name></author><author><name sortKey="Hogan, J M" uniqKey="Hogan J">J.M., Hogan</name></author><author><name sortKey="Ragan, M A" uniqKey="Ragan M">M.A. Ragan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chang, Y" uniqKey="Chang Y">Y., Chang</name></author><author><name sortKey="Graham, S W" uniqKey="Graham S">S.W. Graham</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Costa, I R" uniqKey="Costa I">I.R., Costa</name></author><author><name sortKey="Prosdocimi, F" uniqKey="Prosdocimi F">F., Prosdocimi</name></author><author><name sortKey="Jennings, W B" uniqKey="Jennings W">W.B. Jennings</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Cranston, K A" uniqKey="Cranston K">K.A., Cranston</name></author><author><name sortKey="Hurwitz, B" uniqKey="Hurwitz B">B., Hurwitz</name></author><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Ware, D" uniqKey="Ware D">D., Ware</name></author><author><name sortKey="Wing, R A" uniqKey="Wing R">R.A., Wing</name></author><author><name sortKey="Stein, L" uniqKey="Stein L">L. Stein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edwards, S V" uniqKey="Edwards S">S.V., Edwards</name></author><author><name sortKey="Xi, Z X" uniqKey="Xi Z">Z.X., Xi</name></author><author><name sortKey="Janke, A" uniqKey="Janke A">A., Janke</name></author><author><name sortKey="Faircloth, B C" uniqKey="Faircloth B">B.C., Faircloth</name></author><author><name sortKey="Mccormack, J E" uniqKey="Mccormack J">J.E., McCormack</name></author><author><name sortKey="Glenn, T C" uniqKey="Glenn T">T.C., Glenn</name></author><author><name sortKey="Zhong, B J" uniqKey="Zhong B">B.J., Zhong</name></author><author><name sortKey="Wu, S Y" uniqKey="Wu S">S.Y., Wu</name></author><author><name sortKey="Lemmon, E M" uniqKey="Lemmon E">E.M., Lemmon</name></author><author><name sortKey="Lemmon, A R" uniqKey="Lemmon A">A.R., Lemmon</name></author><author><name sortKey="Leache, A D" uniqKey="Leache A">A.D., Leache</name></author><author><name sortKey="Liu, L" uniqKey="Liu L">L., Liu</name></author><author><name sortKey="Davis, C C" uniqKey="Davis C">C.C. Davis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fan, H" uniqKey="Fan H">H., Fan</name></author><author><name sortKey="Ives, A R" uniqKey="Ives A">A.R., Ives</name></author><author><name sortKey="Surget Groba, Y" uniqKey="Surget Groba Y">Y., Surget-Groba</name></author><author><name sortKey="Cannon, C H" uniqKey="Cannon C">C.H. Cannon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Felsenstein, J" uniqKey="Felsenstein J">J. Felsenstein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fontaine, M C" uniqKey="Fontaine M">M.C., Fontaine</name></author><author><name sortKey="Pease, J B" uniqKey="Pease J">J.B., Pease</name></author><author><name sortKey="Steele, A" uniqKey="Steele A">A., Steele</name></author><author><name sortKey="Waterhouse, R M" uniqKey="Waterhouse R">R.M., Waterhouse</name></author><author><name sortKey="Neafsey, D E" uniqKey="Neafsey D">D.E., Neafsey</name></author><author><name sortKey="Sharakhov, I V" uniqKey="Sharakhov I">I.V., Sharakhov</name></author><author><name sortKey="Jiang, X F" uniqKey="Jiang X">X.F., Jiang</name></author><author><name sortKey="Hall, A B" uniqKey="Hall A">A.B., Hall</name></author><author><name sortKey="Catteruccia, F" uniqKey="Catteruccia F">F., Catteruccia</name></author><author><name sortKey="Kakani, E" uniqKey="Kakani E">E., Kakani</name></author><author><name sortKey="Mitchell, S N" uniqKey="Mitchell S">S.N., Mitchell</name></author><author><name sortKey="Wu, Y C" uniqKey="Wu Y">Y.C., Wu</name></author><author><name sortKey="Smith, H A" uniqKey="Smith H">H.A., Smith</name></author><author><name sortKey="Love, R R" uniqKey="Love R">R.R., Love</name></author><author><name sortKey="Lawniczak, M K" uniqKey="Lawniczak M">M.K., Lawniczak</name></author><author><name sortKey="Slotman, M A" uniqKey="Slotman M">M.A., Slotman</name></author><author><name sortKey="Emrich, S J" uniqKey="Emrich S">S.J., Emrich</name></author><author><name sortKey="Hahn, M W" uniqKey="Hahn M">M.W., Hahn</name></author><author><name sortKey="Besansky, N J" uniqKey="Besansky N">N.J. Besansky</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gardner, S N" uniqKey="Gardner S">S.N., Gardner</name></author><author><name sortKey="Hall, B G" uniqKey="Hall B">B.G. Hall</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gardner, S N" uniqKey="Gardner S">S.N., Gardner</name></author><author><name sortKey="Slezak, T" uniqKey="Slezak T">T., Slezak</name></author><author><name sortKey="Hall, B G" uniqKey="Hall B">B.G. Hall</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gusfield, D" uniqKey="Gusfield D">D. Gusfield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Haubold, B" uniqKey="Haubold B">B., Haubold</name></author><author><name sortKey="Klotzl, F" uniqKey="Klotzl F">F., Klotzl</name></author><author><name sortKey="Pfaffelhuber, P" uniqKey="Pfaffelhuber P">P. Pfaffelhuber</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hohl, M" uniqKey="Hohl M">M., Hohl</name></author><author><name sortKey="Ragan, M A" uniqKey="Ragan M">M.A. Ragan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, C H" uniqKey="Huang C">C.-H., Huang</name></author><author><name sortKey="Sun, R" uniqKey="Sun R">R., Sun</name></author><author><name sortKey="Hu, Y" uniqKey="Hu Y">Y., Hu</name></author><author><name sortKey="Zeng, L" uniqKey="Zeng L">L., Zeng</name></author><author><name sortKey="Zhang, N" uniqKey="Zhang N">N., Zhang</name></author><author><name sortKey="Cai, L" uniqKey="Cai L">L., Cai</name></author><author><name sortKey="Zhang, Q" uniqKey="Zhang Q">Q., Zhang</name></author><author><name sortKey="Koch, M A" uniqKey="Koch M">M.A., Koch</name></author><author><name sortKey="Al Shehbaz, I" uniqKey="Al Shehbaz I">I., Al-Shehbaz</name></author><author><name sortKey="Edger, P P" uniqKey="Edger P">P.P., Edger</name></author><author><name sortKey="Pires, J C" uniqKey="Pires J">J.C., Pires</name></author><author><name sortKey="Tan, D Y" uniqKey="Tan D">D.-Y., Tan</name></author><author><name sortKey="Zhong, Y" uniqKey="Zhong Y">Y., Zhong</name></author><author><name sortKey="Ma, H" uniqKey="Ma H">H. Ma</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huelsenbeck, J P" uniqKey="Huelsenbeck J">J.P. Huelsenbeck</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huson, D H" uniqKey="Huson D">D.H., Huson</name></author><author><name sortKey="Rupp, R" uniqKey="Rupp R">R., Rupp</name></author><author><name sortKey="Scornavacca, C" uniqKey="Scornavacca C">C. Scornavacca</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kloepper, T H" uniqKey="Kloepper T">T.H., Kloepper</name></author><author><name sortKey="Huson, D H" uniqKey="Huson D">D.H. Huson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kurtz, S" uniqKey="Kurtz S">S., Kurtz</name></author><author><name sortKey="Phillippy, A" uniqKey="Phillippy A">A., Phillippy</name></author><author><name sortKey="Delcher, A L" uniqKey="Delcher A">A.L., Delcher</name></author><author><name sortKey="Smoot, M" uniqKey="Smoot M">M., Smoot</name></author><author><name sortKey="Shumway, M" uniqKey="Shumway M">M., Shumway</name></author><author><name sortKey="Antonescu, C" uniqKey="Antonescu C">C., Antonescu</name></author><author><name sortKey="Salzberg, S L" uniqKey="Salzberg S">S.L. Salzberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lam, V K Y" uniqKey="Lam V">V.K.Y., Lam</name></author><author><name sortKey="Gomez, M S" uniqKey="Gomez M">M.S., Gomez</name></author><author><name sortKey="Graham, S W" uniqKey="Graham S">S.W. Graham</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lavin, M" uniqKey="Lavin M">M., Lavin</name></author><author><name sortKey="Herendeen, P S" uniqKey="Herendeen P">P.S., Herendeen</name></author><author><name sortKey="Wojciechowski, M F" uniqKey="Wojciechowski M">M.F. Wojciechowski</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Leimeister, C A" uniqKey="Leimeister C">C.A., Leimeister</name></author><author><name sortKey="Morgenstern, B" uniqKey="Morgenstern B">B. Morgenstern</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, L" uniqKey="Liu L">L., Liu</name></author><author><name sortKey="Xi, Z X" uniqKey="Xi Z">Z.X., Xi</name></author><author><name sortKey="Wu, S Y" uniqKey="Wu S">S.Y., Wu</name></author><author><name sortKey="Davis, C C" uniqKey="Davis C">C.C., Davis</name></author><author><name sortKey="Edwards, S V" uniqKey="Edwards S">S.V. Edwards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, L A" uniqKey="Liu L">L.A., Liu</name></author><author><name sortKey="Yu, L L" uniqKey="Yu L">L.L., Yu</name></author><author><name sortKey="Edwards, S V" uniqKey="Edwards S">S.V. Edwards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y., Liu</name></author><author><name sortKey="Cox, C J" uniqKey="Cox C">C.J., Cox</name></author><author><name sortKey="Wang, W" uniqKey="Wang W">W., Wang</name></author><author><name sortKey="Goffinet, B" uniqKey="Goffinet B">B. Goffinet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Loytynoja, A" uniqKey="Loytynoja A">A., Loytynoja</name></author><author><name sortKey="Goldman, N" uniqKey="Goldman N">N. Goldman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Luo, J" uniqKey="Luo J">J., Luo</name></author><author><name sortKey="Hou, B W" uniqKey="Hou B">B.W., Hou</name></author><author><name sortKey="Niu, Z T" uniqKey="Niu Z">Z.T., Niu</name></author><author><name sortKey="Liu, W" uniqKey="Liu W">W., Liu</name></author><author><name sortKey="Xue, Q Y" uniqKey="Xue Q">Q.Y., Xue</name></author><author><name sortKey="Ding, X Y" uniqKey="Ding X">X.Y. Ding</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maddison, W P" uniqKey="Maddison W">W.P. Maddison</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Magall N, S" uniqKey="Magall N S">S., Magallón</name></author><author><name sortKey="G Mez Acevedo, S" uniqKey="G Mez Acevedo S">S., Gómez-Acevedo</name></author><author><name sortKey="Sanchez Reyes, L L" uniqKey="Sanchez Reyes L">L.L., Sánchez-Reyes</name></author><author><name sortKey="Hernandez Hernandez, T" uniqKey="Hernandez Hernandez T">T. Hernández-Hernández</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Misof, B" uniqKey="Misof B">B., Misof</name></author><author><name sortKey="Liu, S L" uniqKey="Liu S">S.L., Liu</name></author><author><name sortKey="Meusemann, K" uniqKey="Meusemann K">K., Meusemann</name></author><author><name sortKey="Peters, R S" uniqKey="Peters R">R.S., Peters</name></author><author><name sortKey="Donath, A" uniqKey="Donath A">A., Donath</name></author><author><name sortKey="Mayer, C" uniqKey="Mayer C">C., Mayer</name></author><author><name sortKey="Frandsen, P B" uniqKey="Frandsen P">P.B., Frandsen</name></author><author><name sortKey="Ware, J" uniqKey="Ware J">J., Ware</name></author><author><name sortKey="Flouri, T" uniqKey="Flouri T">T., Flouri</name></author><author><name sortKey="Beutel, R G" uniqKey="Beutel R">R.G., Beutel</name></author><author><name sortKey="Niehuis, O" uniqKey="Niehuis O">O., Niehuis</name></author><author><name sortKey="Petersen, M" uniqKey="Petersen M">M., Petersen</name></author><author><name sortKey="Izquierdo Carrasco, F" uniqKey="Izquierdo Carrasco F">F., Izquierdo-Carrasco</name></author><author><name sortKey="Wappler, T" uniqKey="Wappler T">T., Wappler</name></author><author><name sortKey="Rust, J" uniqKey="Rust J">J., Rust</name></author><author><name sortKey="Aberer, A J" uniqKey="Aberer A">A.J., Aberer</name></author><author><name sortKey="Aspock, U" uniqKey="Aspock U">U., Aspock</name></author><author><name sortKey="Aspock, H" uniqKey="Aspock H">H., Aspock</name></author><author><name sortKey="Bartel, D" uniqKey="Bartel D">D., Bartel</name></author><author><name sortKey="Blanke, A" uniqKey="Blanke A">A., Blanke</name></author><author><name sortKey="Berger, S" uniqKey="Berger S">S., Berger</name></author><author><name sortKey="Bohm, A" uniqKey="Bohm A">A., Bohm</name></author><author><name sortKey="Buckley, T R" uniqKey="Buckley T">T.R., Buckley</name></author><author><name sortKey="Calcott, B" uniqKey="Calcott B">B., Calcott</name></author><author><name sortKey="Chen, J Q" uniqKey="Chen J">J.Q., Chen</name></author><author><name sortKey="Friedrich, F" uniqKey="Friedrich F">F., Friedrich</name></author><author><name sortKey="Fukui, M" uniqKey="Fukui M">M., Fukui</name></author><author><name sortKey="Fujita, M" uniqKey="Fujita M">M., Fujita</name></author><author><name sortKey="Greve, C" uniqKey="Greve C">C., Greve</name></author><author><name sortKey="Grobe, P" uniqKey="Grobe P">P., Grobe</name></author><author><name sortKey="Gu, S C" uniqKey="Gu S">S.C., Gu</name></author><author><name sortKey="Huang, Y" uniqKey="Huang Y">Y., Huang</name></author><author><name sortKey="Jermiin, L S" uniqKey="Jermiin L">L.S., Jermiin</name></author><author><name sortKey="Kawahara, A Y" uniqKey="Kawahara A">A.Y., Kawahara</name></author><author><name sortKey="Krogmann, L" uniqKey="Krogmann L">L., Krogmann</name></author><author><name sortKey="Kubiak, M" uniqKey="Kubiak M">M., Kubiak</name></author><author><name sortKey="Lanfear, R" uniqKey="Lanfear R">R., Lanfear</name></author><author><name sortKey="Letsch, H" uniqKey="Letsch H">H., Letsch</name></author><author><name sortKey="Li, Y Y" uniqKey="Li Y">Y.Y., Li</name></author><author><name sortKey="Li, Z Y" uniqKey="Li Z">Z.Y., Li</name></author><author><name sortKey="Li, J G" uniqKey="Li J">J.G., Li</name></author><author><name sortKey="Lu, H R" uniqKey="Lu H">H.R., Lu</name></author><author><name sortKey="Machida, R" uniqKey="Machida R">R., Machida</name></author><author><name sortKey="Mashimo, Y" uniqKey="Mashimo Y">Y., Mashimo</name></author><author><name sortKey="Kapli, P" uniqKey="Kapli P">P., Kapli</name></author><author><name sortKey="Mckenna, D D" uniqKey="Mckenna D">D.D., McKenna</name></author><author><name sortKey="Meng, G L" uniqKey="Meng G">G.L., Meng</name></author><author><name sortKey="Nakagaki, Y" uniqKey="Nakagaki Y">Y., Nakagaki</name></author><author><name sortKey="Navarrete Heredia, J L" uniqKey="Navarrete Heredia J">J.L., Navarrete-Heredia</name></author><author><name sortKey="Ott, M" uniqKey="Ott M">M., Ott</name></author><author><name sortKey="Ou, Y X" uniqKey="Ou Y">Y.X., Ou</name></author><author><name sortKey="Pass, G" uniqKey="Pass G">G., Pass</name></author><author><name sortKey="Podsiadlowski, L" uniqKey="Podsiadlowski L">L., Podsiadlowski</name></author><author><name sortKey="Pohl, H" uniqKey="Pohl H">H., Pohl</name></author><author><name sortKey="Reumont, B M" uniqKey="Reumont B">B.M., Reumont</name></author><author><name sortKey="Schutte, K" uniqKey="Schutte K">K., Schutte</name></author><author><name sortKey="Sekiya, K" uniqKey="Sekiya K">K., Sekiya</name></author><author><name sortKey="Shimizu, S" uniqKey="Shimizu S">S., Shimizu</name></author><author><name sortKey="Slipinski, A" uniqKey="Slipinski A">A., Slipinski</name></author><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A., Stamatakis</name></author><author><name sortKey="Song, W H" uniqKey="Song W">W.H., Song</name></author><author><name sortKey="Su, X" uniqKey="Su X">X., Su</name></author><author><name sortKey="Szucsich, N U" uniqKey="Szucsich N">N.U., Szucsich</name></author><author><name sortKey="Tan, M H" uniqKey="Tan M">M.H., Tan</name></author><author><name sortKey="Tan, X M" uniqKey="Tan X">X.M., Tan</name></author><author><name sortKey="Tang, M" uniqKey="Tang M">M., Tang</name></author><author><name sortKey="Tang, J B" uniqKey="Tang J">J.B., Tang</name></author><author><name sortKey="Timelthaler, G" uniqKey="Timelthaler G">G., Timelthaler</name></author><author><name sortKey="Tomizuka, S" uniqKey="Tomizuka S">S., Tomizuka</name></author><author><name sortKey="Trautwein, M" uniqKey="Trautwein M">M., Trautwein</name></author><author><name sortKey="Tong, X L" uniqKey="Tong X">X.L., Tong</name></author><author><name sortKey="Uchifune, T" uniqKey="Uchifune T">T., Uchifune</name></author><author><name sortKey="Walzl, M G" uniqKey="Walzl M">M.G., Walzl</name></author><author><name sortKey="Wiegmann, B M" uniqKey="Wiegmann B">B.M., Wiegmann</name></author><author><name sortKey="Wilbrandt, J" uniqKey="Wilbrandt J">J., Wilbrandt</name></author><author><name sortKey="Wipfler, B" uniqKey="Wipfler B">B., Wipfler</name></author><author><name sortKey="Wong, T K F" uniqKey="Wong T">T.K.F., Wong</name></author><author><name sortKey="Wu, Q" uniqKey="Wu Q">Q., Wu</name></author><author><name sortKey="Wu, G X" uniqKey="Wu G">G.X., Wu</name></author><author><name sortKey="Xie, Y L" uniqKey="Xie Y">Y.L., Xie</name></author><author><name sortKey="Yang, S Z" uniqKey="Yang S">S.Z., Yang</name></author><author><name sortKey="Yang, Q" uniqKey="Yang Q">Q., Yang</name></author><author><name sortKey="Yeates, D K" uniqKey="Yeates D">D.K., Yeates</name></author><author><name sortKey="Yoshizawa, K" uniqKey="Yoshizawa K">K., Yoshizawa</name></author><author><name sortKey="Zhang, Q" uniqKey="Zhang Q">Q., Zhang</name></author><author><name sortKey="Zhang, R" uniqKey="Zhang R">R., Zhang</name></author><author><name sortKey="Zhang, W W" uniqKey="Zhang W">W.W., Zhang</name></author><author><name sortKey="Zhang, Y H" uniqKey="Zhang Y">Y.H., Zhang</name></author><author><name sortKey="Zhao, J" uniqKey="Zhao J">J., Zhao</name></author><author><name sortKey="Zhou, C R" uniqKey="Zhou C">C.R., Zhou</name></author><author><name sortKey="Zhou, L L" uniqKey="Zhou L">L.L., Zhou</name></author><author><name sortKey="Ziesmann, T" uniqKey="Ziesmann T">T., Ziesmann</name></author><author><name sortKey="Zou, S J" uniqKey="Zou S">S.J., Zou</name></author><author><name sortKey="Li, Y R" uniqKey="Li Y">Y.R., Li</name></author><author><name sortKey="Xu, X" uniqKey="Xu X">X., Xu</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y., Zhang</name></author><author><name sortKey="Yang, H M" uniqKey="Yang H">H.M., Yang</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J., Wang</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J., Wang</name></author><author><name sortKey="Kjer, K M" uniqKey="Kjer K">K.M., Kjer</name></author><author><name sortKey="Zhou, X" uniqKey="Zhou X">X. Zhou</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moore, M J" uniqKey="Moore M">M.J., Moore</name></author><author><name sortKey="Bell, C D" uniqKey="Bell C">C.D., Bell</name></author><author><name sortKey="Soltis, P S" uniqKey="Soltis P">P.S., Soltis</name></author><author><name sortKey="Soltis, D E" uniqKey="Soltis D">D.E. Soltis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Morgulis, A" uniqKey="Morgulis A">A., Morgulis</name></author><author><name sortKey="Gertz, E M" uniqKey="Gertz E">E.M., Gertz</name></author><author><name sortKey="Schaffer, A A" uniqKey="Schaffer A">A.A., Schaffer</name></author><author><name sortKey="Agarwala, R" uniqKey="Agarwala R">R. Agarwala</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nater, A" uniqKey="Nater A">A., Nater</name></author><author><name sortKey="Burri, R" uniqKey="Burri R">R., Burri</name></author><author><name sortKey="Kawakami, T" uniqKey="Kawakami T">T., Kawakami</name></author><author><name sortKey="Smeds, L" uniqKey="Smeds L">L., Smeds</name></author><author><name sortKey="Ellegren, H" uniqKey="Ellegren H">H. Ellegren</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Neafsey, D E" uniqKey="Neafsey D">D.E., Neafsey</name></author><author><name sortKey="Waterhouse, R M" uniqKey="Waterhouse R">R.M., Waterhouse</name></author><author><name sortKey="Abai, M R" uniqKey="Abai M">M.R., Abai</name></author><author><name sortKey="Aganezov, S S" uniqKey="Aganezov S">S.S., Aganezov</name></author><author><name sortKey="Alekseyev, M A" uniqKey="Alekseyev M">M.A., Alekseyev</name></author><author><name sortKey="Allen, J E" uniqKey="Allen J">J.E., Allen</name></author><author><name sortKey="Amon, J" uniqKey="Amon J">J., Amon</name></author><author><name sortKey="Arca, B" uniqKey="Arca B">B., Arca</name></author><author><name sortKey="Arensburger, P" uniqKey="Arensburger P">P., Arensburger</name></author><author><name sortKey="Artemov, G" uniqKey="Artemov G">G., Artemov</name></author><author><name sortKey="Assour, L A" uniqKey="Assour L">L.A., Assour</name></author><author><name sortKey="Basseri, H" uniqKey="Basseri H">H., Basseri</name></author><author><name sortKey="Berlin, A" uniqKey="Berlin A">A., Berlin</name></author><author><name sortKey="Birren, B W" uniqKey="Birren B">B.W., Birren</name></author><author><name sortKey="Blandin, S A" uniqKey="Blandin S">S.A., Blandin</name></author><author><name sortKey="Brockman, A I" uniqKey="Brockman A">A.I., Brockman</name></author><author><name sortKey="Burkot, T R" uniqKey="Burkot T">T.R., Burkot</name></author><author><name sortKey="Burt, A" uniqKey="Burt A">A., Burt</name></author><author><name sortKey="Chan, C S" uniqKey="Chan C">C.S., Chan</name></author><author><name sortKey="Chauve, C" uniqKey="Chauve C">C., Chauve</name></author><author><name sortKey="Chiu, J C" uniqKey="Chiu J">J.C., Chiu</name></author><author><name sortKey="Christensen, M" uniqKey="Christensen M">M., Christensen</name></author><author><name sortKey="Costantini, C" uniqKey="Costantini C">C., Costantini</name></author><author><name sortKey="Davidson, V L M" uniqKey="Davidson V">V.L.M., Davidson</name></author><author><name sortKey="Deligianni, E" uniqKey="Deligianni E">E., Deligianni</name></author><author><name sortKey="Dottorini, T" uniqKey="Dottorini T">T., Dottorini</name></author><author><name sortKey="Dritsou, V" uniqKey="Dritsou V">V., Dritsou</name></author><author><name sortKey="Gabriel, S B" uniqKey="Gabriel S">S.B., Gabriel</name></author><author><name sortKey="Guelbeogo, W M" uniqKey="Guelbeogo W">W.M., Guelbeogo</name></author><author><name sortKey="Hall, A B" uniqKey="Hall A">A.B., Hall</name></author><author><name sortKey="Han, M V" uniqKey="Han M">M.V., Han</name></author><author><name sortKey="Hlaing, T" uniqKey="Hlaing T">T., Hlaing</name></author><author><name sortKey="Hughes, D S T" uniqKey="Hughes D">D.S.T., Hughes</name></author><author><name sortKey="Jenkins, A M" uniqKey="Jenkins A">A.M., Jenkins</name></author><author><name sortKey="Jiang, X F" uniqKey="Jiang X">X.F., Jiang</name></author><author><name sortKey="Jungreis, I" uniqKey="Jungreis I">I., Jungreis</name></author><author><name sortKey="Kakani, E G" uniqKey="Kakani E">E.G., Kakani</name></author><author><name sortKey="Kamali, M" uniqKey="Kamali M">M., Kamali</name></author><author><name sortKey="Kemppainen, P" uniqKey="Kemppainen P">P., Kemppainen</name></author><author><name sortKey="Kennedy, R C" uniqKey="Kennedy R">R.C., Kennedy</name></author><author><name sortKey="Kirmitzoglou, I K" uniqKey="Kirmitzoglou I">I.K., Kirmitzoglou</name></author><author><name sortKey="Koekemoer, L L" uniqKey="Koekemoer L">L.L., Koekemoer</name></author><author><name sortKey="Laban, N" uniqKey="Laban N">N., Laban</name></author><author><name sortKey="Langridge, N" uniqKey="Langridge N">N., Langridge</name></author><author><name sortKey="Lawniczak, M K N" uniqKey="Lawniczak M">M.K.N., Lawniczak</name></author><author><name sortKey="Lirakis, M" uniqKey="Lirakis M">M., Lirakis</name></author><author><name sortKey="Lobo, N F" uniqKey="Lobo N">N.F., Lobo</name></author><author><name sortKey="Lowy, E" uniqKey="Lowy E">E., Lowy</name></author><author><name sortKey="Callum, R M" uniqKey="Callum R">R.M., Callum</name></author><author><name sortKey="Mao, C H" uniqKey="Mao C">C.H., Mao</name></author><author><name sortKey="Maslen, G" uniqKey="Maslen G">G., Maslen</name></author><author><name sortKey="Mbogo, C" uniqKey="Mbogo C">C., Mbogo</name></author><author><name sortKey="Mccarthy, J" uniqKey="Mccarthy J">J., McCarthy</name></author><author><name sortKey="Michel, K" uniqKey="Michel K">K., Michel</name></author><author><name sortKey="Mitchell, S N" uniqKey="Mitchell S">S.N., Mitchell</name></author><author><name sortKey="Moore, W" uniqKey="Moore W">W., Moore</name></author><author><name sortKey="Murphy, K A" uniqKey="Murphy K">K.A., Murphy</name></author><author><name sortKey="Naumenko, A N" uniqKey="Naumenko A">A.N., Naumenko</name></author><author><name sortKey="Nolan, T" uniqKey="Nolan T">T., Nolan</name></author><author><name sortKey="Novoa, E M" uniqKey="Novoa E">E.M., Novoa</name></author><author><name sortKey="Loughlin, S" uniqKey="Loughlin S">S., Loughlin</name></author><author><name sortKey="Oringanje, C" uniqKey="Oringanje C">C., Oringanje</name></author><author><name sortKey="Oshaghi, M A" uniqKey="Oshaghi M">M.A., Oshaghi</name></author><author><name sortKey="Pakpour, N" uniqKey="Pakpour N">N., Pakpour</name></author><author><name sortKey="Papathanos, P A" uniqKey="Papathanos P">P.A., Papathanos</name></author><author><name sortKey="Peery, A N" uniqKey="Peery A">A.N., Peery</name></author><author><name sortKey="Povelones, M" uniqKey="Povelones M">M., Povelones</name></author><author><name sortKey="Prakash, A" uniqKey="Prakash A">A., Prakash</name></author><author><name sortKey="Price, D P" uniqKey="Price D">D.P., Price</name></author><author><name sortKey="Rajaraman, A" uniqKey="Rajaraman A">A., Rajaraman</name></author><author><name sortKey="Reimer, L J" uniqKey="Reimer L">L.J., Reimer</name></author><author><name sortKey="Rinker, D C" uniqKey="Rinker D">D.C., Rinker</name></author><author><name sortKey="Rokas, A" uniqKey="Rokas A">A., Rokas</name></author><author><name sortKey="Russell, T L" uniqKey="Russell T">T.L., Russell</name></author><author><name sortKey="Sagnon, N" uniqKey="Sagnon N">N., Sagnon</name></author><author><name sortKey="Sharakhova, M V" uniqKey="Sharakhova M">M.V., Sharakhova</name></author><author><name sortKey="Shea, T" uniqKey="Shea T">T., Shea</name></author><author><name sortKey="Simao, F A" uniqKey="Simao F">F.A., Simao</name></author><author><name sortKey="Simard, F" uniqKey="Simard F">F., Simard</name></author><author><name sortKey="Slotman, M A" uniqKey="Slotman M">M.A., Slotman</name></author><author><name sortKey="Somboon, P" uniqKey="Somboon P">P., Somboon</name></author><author><name sortKey="Stegniy, V" uniqKey="Stegniy V">V., Stegniy</name></author><author><name sortKey="Struchiner, C J" uniqKey="Struchiner C">C.J., Struchiner</name></author><author><name sortKey="Thomas, G W C" uniqKey="Thomas G">G.W.C., Thomas</name></author><author><name sortKey="Tojo, M" uniqKey="Tojo M">M., Tojo</name></author><author><name sortKey="Topalis, P" uniqKey="Topalis P">P., Topalis</name></author><author><name sortKey="Tubio, J M C" uniqKey="Tubio J">J.M.C., Tubio</name></author><author><name sortKey="Unger, M F" uniqKey="Unger M">M.F., Unger</name></author><author><name sortKey="Vontas, J" uniqKey="Vontas J">J., Vontas</name></author><author><name sortKey="Walton, C" uniqKey="Walton C">C., Walton</name></author><author><name sortKey="Wilding, C S" uniqKey="Wilding C">C.S., Wilding</name></author><author><name sortKey="Willis, J H" uniqKey="Willis J">J.H., Willis</name></author><author><name sortKey="Wu, Y C" uniqKey="Wu Y">Y.C., Wu</name></author><author><name sortKey="Yan, G Y" uniqKey="Yan G">G.Y., Yan</name></author><author><name sortKey="Zdobnov, E M" uniqKey="Zdobnov E">E.M., Zdobnov</name></author><author><name sortKey="Zhou, X F" uniqKey="Zhou X">X.F., Zhou</name></author><author><name sortKey="Catteruccia, F" uniqKey="Catteruccia F">F., Catteruccia</name></author><author><name sortKey="Christophides, G K" uniqKey="Christophides G">G.K., Christophides</name></author><author><name sortKey="Collins, F H" uniqKey="Collins F">F.H., Collins</name></author><author><name sortKey="Cornman, R S" uniqKey="Cornman R">R.S., Cornman</name></author><author><name sortKey="Crisanti, A" uniqKey="Crisanti A">A., Crisanti</name></author><author><name sortKey="Donnelly, M J" uniqKey="Donnelly M">M.J., Donnelly</name></author><author><name sortKey="Emrich, S J" uniqKey="Emrich S">S.J., Emrich</name></author><author><name sortKey="Fontaine, M C" uniqKey="Fontaine M">M.C., Fontaine</name></author><author><name sortKey="Gelbart, W" uniqKey="Gelbart W">W., Gelbart</name></author><author><name sortKey="Hahn, M W" uniqKey="Hahn M">M.W., Hahn</name></author><author><name sortKey="Hansen, I A" uniqKey="Hansen I">I.A., Hansen</name></author><author><name sortKey="Howell, P I" uniqKey="Howell P">P.I., Howell</name></author><author><name sortKey="Kafatos, F C" uniqKey="Kafatos F">F.C., Kafatos</name></author><author><name sortKey="Kellis, M" uniqKey="Kellis M">M., Kellis</name></author><author><name sortKey="Lawson, D" uniqKey="Lawson D">D., Lawson</name></author><author><name sortKey="Louis, C" uniqKey="Louis C">C., Louis</name></author><author><name sortKey="Luckhart, S" uniqKey="Luckhart S">S., Luckhart</name></author><author><name sortKey="Muskavitch, M A T" uniqKey="Muskavitch M">M.A.T., Muskavitch</name></author><author><name sortKey="Ribeiro, J M" uniqKey="Ribeiro J">J.M., Ribeiro</name></author><author><name sortKey="Riehle, M A" uniqKey="Riehle M">M.A., Riehle</name></author><author><name sortKey="Sharakhov, I V" uniqKey="Sharakhov I">I.V., Sharakhov</name></author><author><name sortKey="Tu, Z J" uniqKey="Tu Z">Z.J., Tu</name></author><author><name sortKey="Zwiebel, L J" uniqKey="Zwiebel L">L.J., Zwiebel</name></author><author><name sortKey="Besansky, N J" uniqKey="Besansky N">N.J. Besansky</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nicolae, M" uniqKey="Nicolae M">M., Nicolae</name></author><author><name sortKey="Rajasekaran, S" uniqKey="Rajasekaran S">S. Rajasekaran</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pevzner, P A" uniqKey="Pevzner P">P.A., Pevzner</name></author><author><name sortKey="Waterman, M S" uniqKey="Waterman M">M.S. Waterman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pollard, D A" uniqKey="Pollard D">D.A., Pollard</name></author><author><name sortKey="Iyer, V N" uniqKey="Iyer V">V.N., Iyer</name></author><author><name sortKey="Moses, A M" uniqKey="Moses A">A.M., Moses</name></author><author><name sortKey="Eisen, M B" uniqKey="Eisen M">M.B. Eisen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Prum, R O" uniqKey="Prum R">R.O., Prum</name></author><author><name sortKey="Berv, J S" uniqKey="Berv J">J.S., Berv</name></author><author><name sortKey="Dornburg, A" uniqKey="Dornburg A">A., Dornburg</name></author><author><name sortKey="Field, D J" uniqKey="Field D">D.J., Field</name></author><author><name sortKey="Townsend, J P" uniqKey="Townsend J">J.P., Townsend</name></author><author><name sortKey="Lemmon, E M" uniqKey="Lemmon E">E.M., Lemmon</name></author><author><name sortKey="Lemmon, A R" uniqKey="Lemmon A">A.R. Lemmon</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rajasekaran, S" uniqKey="Rajasekaran S">S., Rajasekaran</name></author><author><name sortKey="Nicolae, M" uniqKey="Nicolae M">M. Nicolae</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rambaut, A" uniqKey="Rambaut A">A., Rambaut</name></author><author><name sortKey="Grassly, N C" uniqKey="Grassly N">N.C. Grassly</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ruhfel, B R" uniqKey="Ruhfel B">B.R., Ruhfel</name></author><author><name sortKey="Gitzendanner, M A" uniqKey="Gitzendanner M">M.A., Gitzendanner</name></author><author><name sortKey="Soltis, P S" uniqKey="Soltis P">P.S., Soltis</name></author><author><name sortKey="Soltis, D E" uniqKey="Soltis D">D.E., Soltis</name></author><author><name sortKey="Burleigh, J G" uniqKey="Burleigh J">J.G. Burleigh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Doyle, J A" uniqKey="Doyle J">J.A. Doyle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Mcmahon, M M" uniqKey="Mcmahon M">M.M., McMahon</name></author><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A., Stamatakis</name></author><author><name sortKey="Zwickl, D J" uniqKey="Zwickl D">D.J., Zwickl</name></author><author><name sortKey="Steel, M" uniqKey="Steel M">M. Steel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Mcmahon, M M" uniqKey="Mcmahon M">M.M., McMahon</name></author><author><name sortKey="Steel, M" uniqKey="Steel M">M. Steel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Mcmahon, M M" uniqKey="Mcmahon M">M.M., McMahon</name></author><author><name sortKey="Steel, M" uniqKey="Steel M">M. Steel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Soltis, D E" uniqKey="Soltis D">D.E., Soltis</name></author><author><name sortKey="Smith, S A" uniqKey="Smith S">S.A., Smith</name></author><author><name sortKey="Cellinese, N" uniqKey="Cellinese N">N., Cellinese</name></author><author><name sortKey="Wurdack, K J" uniqKey="Wurdack K">K.J., Wurdack</name></author><author><name sortKey="Tank, D C" uniqKey="Tank D">D.C., Tank</name></author><author><name sortKey="Brockington, S F" uniqKey="Brockington S">S.F., Brockington</name></author><author><name sortKey="Refulio Rodriguez, N F" uniqKey="Refulio Rodriguez N">N.F., Refulio-Rodriguez</name></author><author><name sortKey="Walker, J B" uniqKey="Walker J">J.B., Walker</name></author><author><name sortKey="Moore, M J" uniqKey="Moore M">M.J., Moore</name></author><author><name sortKey="Carlsward, B S" uniqKey="Carlsward B">B.S., Carlsward</name></author><author><name sortKey="Bell, C D" uniqKey="Bell C">C.D., Bell</name></author><author><name sortKey="Latvis, M" uniqKey="Latvis M">M., Latvis</name></author><author><name sortKey="Crawley, S" uniqKey="Crawley S">S., Crawley</name></author><author><name sortKey="Black, C" uniqKey="Black C">C., Black</name></author><author><name sortKey="Diouf, D" uniqKey="Diouf D">D., Diouf</name></author><author><name sortKey="Xi, Z X" uniqKey="Xi Z">Z.X., Xi</name></author><author><name sortKey="Rushworth, C A" uniqKey="Rushworth C">C.A., Rushworth</name></author><author><name sortKey="Gitzendanner, M A" uniqKey="Gitzendanner M">M.A., Gitzendanner</name></author><author><name sortKey="Sytsma, K J" uniqKey="Sytsma K">K.J., Sytsma</name></author><author><name sortKey="Qiu, Y L" uniqKey="Qiu Y">Y.L., Qiu</name></author><author><name sortKey="Hilu, K W" uniqKey="Hilu K">K.W., Hilu</name></author><author><name sortKey="Davis, C C" uniqKey="Davis C">C.C., Davis</name></author><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J., Sanderson</name></author><author><name sortKey="Beaman, R S" uniqKey="Beaman R">R.S., Beaman</name></author><author><name sortKey="Olmstead, R G" uniqKey="Olmstead R">R.G., Olmstead</name></author><author><name sortKey="Judd, W S" uniqKey="Judd W">W.S., Judd</name></author><author><name sortKey="Donoghue, M J" uniqKey="Donoghue M">M.J., Donoghue</name></author><author><name sortKey="Soltis, P S" uniqKey="Soltis P">P.S. Soltis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A. Stamatakis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sun, M" uniqKey="Sun M">M., Sun</name></author><author><name sortKey="Soltis, D E" uniqKey="Soltis D">D.E., Soltis</name></author><author><name sortKey="Soltis, P S" uniqKey="Soltis P">P.S., Soltis</name></author><author><name sortKey="Zhu, X Y" uniqKey="Zhu X">X.Y., Zhu</name></author><author><name sortKey="Burleigh, J G" uniqKey="Burleigh J">J.G., Burleigh</name></author><author><name sortKey="Chen, Z D" uniqKey="Chen Z">Z.D. Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tang, L" uniqKey="Tang L">L., Tang</name></author><author><name sortKey="Zou, X H" uniqKey="Zou X">X.H., Zou</name></author><author><name sortKey="Achoundong, G" uniqKey="Achoundong G">G., Achoundong</name></author><author><name sortKey="Potgieter, C" uniqKey="Potgieter C">C., Potgieter</name></author><author><name sortKey="Second, G" uniqKey="Second G">G., Second</name></author><author><name sortKey="Zhang, D Y" uniqKey="Zhang D">D.Y., Zhang</name></author><author><name sortKey="Ge, S" uniqKey="Ge S">S. Ge</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ulitsky, I" uniqKey="Ulitsky I">I., Ulitsky</name></author><author><name sortKey="Burstein, D" uniqKey="Burstein D">D., Burstein</name></author><author><name sortKey="Tuller, T" uniqKey="Tuller T">T., Tuller</name></author><author><name sortKey="Chor, B" uniqKey="Chor B">B. Chor</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="White, M A" uniqKey="White M">M.A., White</name></author><author><name sortKey="Ane, C" uniqKey="Ane C">C., Ane</name></author><author><name sortKey="Dewey, C N" uniqKey="Dewey C">C.N., Dewey</name></author><author><name sortKey="Larget, B R" uniqKey="Larget B">B.R., Larget</name></author><author><name sortKey="Payseur, B A" uniqKey="Payseur B">B.A. Payseur</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wickett, N J" uniqKey="Wickett N">N.J., Wickett</name></author><author><name sortKey="Mirarab, S" uniqKey="Mirarab S">S., Mirarab</name></author><author><name sortKey="Nguyen, N" uniqKey="Nguyen N">N., Nguyen</name></author><author><name sortKey="Warnow, T" uniqKey="Warnow T">T., Warnow</name></author><author><name sortKey="Carpenter, E" uniqKey="Carpenter E">E., Carpenter</name></author><author><name sortKey="Matasci, N" uniqKey="Matasci N">N., Matasci</name></author><author><name sortKey="Ayyampalayam, S" uniqKey="Ayyampalayam S">S., Ayyampalayam</name></author><author><name sortKey="Barker, M S" uniqKey="Barker M">M.S., Barker</name></author><author><name sortKey="Burleigh, J G" uniqKey="Burleigh J">J.G., Burleigh</name></author><author><name sortKey="Gitzendanner, M A" uniqKey="Gitzendanner M">M.A. Gitzendanner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Worobey, M" uniqKey="Worobey M">M., Worobey</name></author><author><name sortKey="Han, G Z" uniqKey="Han G">G.Z., Han</name></author><author><name sortKey="Rambaut, A" uniqKey="Rambaut A">A. Rambaut</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, Y" uniqKey="Yang Y">Y., Yang</name></author><author><name sortKey="Moore, M J" uniqKey="Moore M">M.J., Moore</name></author><author><name sortKey="Brockington, S F" uniqKey="Brockington S">S.F., Brockington</name></author><author><name sortKey="Soltis, D" uniqKey="Soltis D">D., Soltis</name></author><author><name sortKey="Wong, G K" uniqKey="Wong G">G.K., Wong</name></author><author><name sortKey="Carpenter, E J" uniqKey="Carpenter E">E.J., Carpenter</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y., Zhang</name></author><author><name sortKey="Chen, L" uniqKey="Chen L">L., Chen</name></author><author><name sortKey="Yan, Z" uniqKey="Yan Z">Z., Yan</name></author><author><name sortKey="Xie, Y" uniqKey="Xie Y">Y., Xie</name></author><author><name sortKey="Sage, R F" uniqKey="Sage R">R.F., Sage</name></author><author><name sortKey="Covshoff, S" uniqKey="Covshoff S">S., Covshoff</name></author><author><name sortKey="Hibberd, J M" uniqKey="Hibberd J">J.M., Hibberd</name></author><author><name sortKey="Nelson, M N" uniqKey="Nelson M">M.N., Nelson</name></author><author><name sortKey="Smith, S A" uniqKey="Smith S">S.A. Smith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, N" uniqKey="Zhang N">N., Zhang</name></author><author><name sortKey="Zeng, L P" uniqKey="Zeng L">L.P., Zeng</name></author><author><name sortKey="Shan, H Y" uniqKey="Shan H">H.Y., Shan</name></author><author><name sortKey="Ma, H" uniqKey="Ma H">H. Ma</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhang, Q J" uniqKey="Zhang Q">Q.J., Zhang</name></author><author><name sortKey="Zhu, T" uniqKey="Zhu T">T., Zhu</name></author><author><name sortKey="Xia, E H" uniqKey="Xia E">E.H., Xia</name></author><author><name sortKey="Shi, C" uniqKey="Shi C">C., Shi</name></author><author><name sortKey="Liu, Y L" uniqKey="Liu Y">Y.L., Liu</name></author><author><name sortKey="Zhang, Y" uniqKey="Zhang Y">Y., Zhang</name></author><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y., Liu</name></author><author><name sortKey="Jiang, W K" uniqKey="Jiang W">W.K., Jiang</name></author><author><name sortKey="Zhao, Y J" uniqKey="Zhao Y">Y.J., Zhao</name></author><author><name sortKey="Mao, S Y" uniqKey="Mao S">S.Y., Mao</name></author><author><name sortKey="Zhang, L P" uniqKey="Zhang L">L.P., Zhang</name></author><author><name sortKey="Huang, H" uniqKey="Huang H">H., Huang</name></author><author><name sortKey="Jiao, J Y" uniqKey="Jiao J">J.Y., Jiao</name></author><author><name sortKey="Xu, P Z" uniqKey="Xu P">P.Z., Xu</name></author><author><name sortKey="Yao, Q Y" uniqKey="Yao Q">Q.Y., Yao</name></author><author><name sortKey="Zeng, F C" uniqKey="Zeng F">F.C., Zeng</name></author><author><name sortKey="Yang, L L" uniqKey="Yang L">L.L., Yang</name></author><author><name sortKey="Gao, J" uniqKey="Gao J">J., Gao</name></author><author><name sortKey="Tao, D Y" uniqKey="Tao D">D.Y., Tao</name></author><author><name sortKey="Wang, Y J" uniqKey="Wang Y">Y.J., Wang</name></author><author><name sortKey="Bennetzen, J L" uniqKey="Bennetzen J">J.L., Bennetzen</name></author><author><name sortKey="Gao, L Z" uniqKey="Gao L">L.Z. Gao</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhao, Z M" uniqKey="Zhao Z">Z.-M., Zhao</name></author><author><name sortKey="Zhao, B" uniqKey="Zhao B">B., Zhao</name></author><author><name sortKey="Bai, Y" uniqKey="Bai Y">Y., Bai</name></author><author><name sortKey="Iamorina, A" uniqKey="Iamorina A">A., Iamorina</name></author><author><name sortKey="Gaffney, S G" uniqKey="Gaffney S">S.G., Gaffney</name></author><author><name sortKey="Schlessinger, J" uniqKey="Schlessinger J">J., Schlessinger</name></author><author><name sortKey="Lifton, R P" uniqKey="Lifton R">R.P., Lifton</name></author><author><name sortKey="Rimm, D L" uniqKey="Rimm D">D.L., Rimm</name></author><author><name sortKey="Townsend, J P" uniqKey="Townsend J">J.P. Townsend</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zhu, X Y" uniqKey="Zhu X">X.Y., Zhu</name></author><author><name sortKey="Chase, M W" uniqKey="Chase M">M.W., Chase</name></author><author><name sortKey="Qiu, Y L" uniqKey="Qiu Y">Y.L., Qiu</name></author><author><name sortKey="Kong, H Z" uniqKey="Kong H">H.Z., Kong</name></author><author><name sortKey="Dilcher, D L" uniqKey="Dilcher D">D.L., Dilcher</name></author><author><name sortKey="Li, J H" uniqKey="Li J">J.H., Li</name></author><author><name sortKey="Chen, Z D" uniqKey="Chen Z">Z.D. Chen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zou, X H" uniqKey="Zou X">X.H., Zou</name></author><author><name sortKey="Zhang, F M" uniqKey="Zhang F">F.M., Zhang</name></author><author><name sortKey="Zhang, J G" uniqKey="Zhang J">J.G., Zhang</name></author><author><name sortKey="Zang, L L" uniqKey="Zang L">L.L., Zang</name></author><author><name sortKey="Tang, L" uniqKey="Tang L">L., Tang</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J., Wang</name></author><author><name sortKey="Sang, T" uniqKey="Sang T">T., Sang</name></author><author><name sortKey="Ge, S" uniqKey="Ge S">S. Ge</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zwickl, D J" uniqKey="Zwickl D">D.J. Zwickl</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zwickl, D J" uniqKey="Zwickl D">D.J., Zwickl</name></author><author><name sortKey="Wing, R" uniqKey="Wing R">R., Wing</name></author><author><name sortKey="Stein, J" uniqKey="Stein J">J., Stein</name></author><author><name sortKey="Ware, D" uniqKey="Ware D">D., Ware</name></author><author><name sortKey="Sanderson, M J" uniqKey="Sanderson M">M.J. Sanderson</name></author></analytic></biblStruct></listBibl></div1></back></TEI><pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Syst Biol</journal-id><journal-id journal-id-type="iso-abbrev">Syst. Biol</journal-id><journal-id journal-id-type="publisher-id">sysbio</journal-id><journal-title-group><journal-title>Systematic Biology</journal-title></journal-title-group><issn pub-type="ppub">1063-5157</issn><issn pub-type="epub">1076-836X</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">28123115</article-id><article-id pub-id-type="pmc">5790135</article-id><article-id pub-id-type="doi">10.1093/sysbio/syw104</article-id><article-id pub-id-type="publisher-id">syw104</article-id><article-categories><subj-group subj-group-type="heading"><subject>Regular Articles</subject></subj-group></article-categories><title-group><article-title>Homology-Aware Phylogenomics at Gigabase Scales</article-title></title-group><contrib-group><contrib contrib-type="author" corresp="yes"><name><surname>Sanderson</surname><given-names>M. J.</given-names></name><xref ref-type="aff" rid="AFF1">1</xref><xref ref-type="corresp" rid="COR1"></xref><pmc-comment>sanderm@email.arizona.edu </pmc-comment>
</contrib><contrib contrib-type="author"><name><surname>Nicolae</surname><given-names>Marius</given-names></name><xref ref-type="aff" rid="AFF2">2</xref></contrib><contrib contrib-type="author"><name><surname>McMahon</surname><given-names>M. M.</given-names></name><xref ref-type="aff" rid="AFF3">3</xref></contrib></contrib-group><aff id="AFF1"><label>1</label><italic>Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721, USA</italic></aff><aff id="AFF2"><label>2</label><italic>Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269, USA</italic></aff><aff id="AFF3"><label>3</label><italic>School of Plant Sciences, University of Arizona, Tucson, AZ 85721, USA</italic></aff><author-notes><corresp id="COR1"><sup>*</sup><italic>Correspondence to be sent to: Department of Ecology and Evolutionary Biology,
University of Arizona, Tucson, AZ 85721, USA; E-mail:
<email>sanderm@email.arizona.edu</email>.</italic></corresp><fn id="syw104-FM1"><p><italic>Associate Editor: Vincent Savolainen</italic></p></fn></author-notes><pub-date pub-type="ppub"><month>7</month><year>2017</year></pub-date><pub-date pub-type="epub" iso-8601-date="2017-01-25"><day>25</day><month>1</month><year>2017</year></pub-date><pub-date pub-type="pmc-release"><day>25</day><month>1</month><year>2017</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on the
<volume>66</volume><issue>4</issue><fpage>590</fpage><lpage>603</lpage><history><date date-type="received"><day>19</day><month>5</month><year>2016</year></date><date date-type="rev-recd"><day>31</day><month>10</month><year>2016</year></date><date date-type="accepted"><day>25</day><month>11</month><year>2016</year></date></history><permissions><copyright-statement>© The Author(s) 2017. Published by Oxford University Press, on behalf
of the Society of Systematic Biologists.</copyright-statement><copyright-year>2017</copyright-year><license license-type="cc-by-nc" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/"><license-p>This is an Open Access article distributed under the terms of the Creative
Commons Attribution Non-Commercial License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc/4.0/">http://creativecommons.org/licenses/by-nc/4.0/</ext-link>), which permits
non-commercial reuse, distribution, and reproduction in any medium, provided the
original work is properly cited. For commercial re-use, please contact
journals.permissions@oup.com</license-p></license></permissions><self-uri xlink:href="syw104.pdf"></self-uri><abstract><title>Abstract</title><p>Obstacles to inferring species trees from whole genome data sets range from algorithmic
and data management challenges to the wholesale discordance in evolutionary history found
in different parts of a genome. Recent work that builds trees directly from genomes by
parsing them into sets of small <inline-formula><tex-math id="M1">\documentclass[12pt]{minimal}
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}{}$k$\end{document}</tex-math></inline-formula>-mer strings holds promise
to streamline and simplify these efforts, but existing approaches do not account well for
gene tree discordance. We describe a “seed and extend” protocol that finds nearly exact
matching sets of orthologous <inline-formula><tex-math id="M2">\documentclass[12pt]{minimal}
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}{}$k$\end{document}</tex-math></inline-formula>-mers and extends them to construct data
sets that can properly account for genomic heterogeneity. Exploiting an efficient suffix
array data structure, sets of whole genomes can be parsed and converted into phylogenetic
data matrices rapidly, with contiguous blocks of <inline-formula><tex-math id="M3">\documentclass[12pt]{minimal}
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}{}$k$\end{document}</tex-math></inline-formula>-mers
from the same chromosome, gene, or scaffold concatenated as needed. Phylogenetic trees
constructed from highly curated rice genome data and a diverse set of six other eukaryotic
whole genome, transcriptome, and organellar genome data sets recovered trees nearly
identical to published phylogenomic analyses, in a small fraction of the time, and
requiring many fewer parameter choices. Our method’s ability to retain local homology
information was demonstrated by using it to characterize gene tree discordance across the
rice genome, and by its robustness to the high rate of interchromosomal gene transfer
found in several rice species.</p></abstract><kwd-group><kwd>k-mer</kwd><kwd>lineage sorting</kwd><kwd><italic>Oryza</italic></kwd><kwd>phylogenomics</kwd><kwd>suffix array</kwd></kwd-group><counts><page-count count="14"></page-count></counts></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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