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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A dynamic compartmental model for the Middle East respiratory syndrome outbreak in the Republic of Korea: A retrospective analysis on control interventions and superspreading events</title><author><name sortKey="Lee, Jonggul" sort="Lee, Jonggul" uniqKey="Lee J" first="Jonggul" last="Lee">Jonggul Lee</name><affiliation><nlm:aff id="aff0005">Department of Mathematics, Konkuk University, Seoul 05029, Republic of Korea</nlm:aff></affiliation></author><author><name sortKey="Chowell, Gerardo" sort="Chowell, Gerardo" uniqKey="Chowell G" first="Gerardo" last="Chowell">Gerardo Chowell</name><affiliation><nlm:aff id="aff0010">School of Public Health, Georgia State University, Atlanta, GA, USA</nlm:aff></affiliation><affiliation><nlm:aff id="aff0015">Division of International Epidemiology and Population Studies, Fogarty International Center, National Institutes of Health, Bethesda, MD, USA</nlm:aff></affiliation></author><author><name sortKey="Jung, Eunok" sort="Jung, Eunok" uniqKey="Jung E" first="Eunok" last="Jung">Eunok Jung</name><affiliation><nlm:aff id="aff0005">Department of Mathematics, Konkuk University, Seoul 05029, Republic of Korea</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">27521523</idno><idno type="pmc">7094115</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC7094115</idno><idno type="RBID">PMC:7094115</idno><idno type="doi">10.1016/j.jtbi.2016.08.009</idno><date when="2016">2016</date><idno type="wicri:Area/Pmc/Corpus">000E86</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000E86</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A dynamic compartmental model for the Middle East respiratory syndrome outbreak in the Republic of Korea: A retrospective analysis on control interventions and superspreading events</title><author><name sortKey="Lee, Jonggul" sort="Lee, Jonggul" uniqKey="Lee J" first="Jonggul" last="Lee">Jonggul Lee</name><affiliation><nlm:aff id="aff0005">Department of Mathematics, Konkuk University, Seoul 05029, Republic of Korea</nlm:aff></affiliation></author><author><name sortKey="Chowell, Gerardo" sort="Chowell, Gerardo" uniqKey="Chowell G" first="Gerardo" last="Chowell">Gerardo Chowell</name><affiliation><nlm:aff id="aff0010">School of Public Health, Georgia State University, Atlanta, GA, USA</nlm:aff></affiliation><affiliation><nlm:aff id="aff0015">Division of International Epidemiology and Population Studies, Fogarty International Center, National Institutes of Health, Bethesda, MD, USA</nlm:aff></affiliation></author><author><name sortKey="Jung, Eunok" sort="Jung, Eunok" uniqKey="Jung E" first="Eunok" last="Jung">Eunok Jung</name><affiliation><nlm:aff id="aff0005">Department of Mathematics, Konkuk University, Seoul 05029, Republic of Korea</nlm:aff></affiliation></author></analytic><series><title level="j">Journal of Theoretical Biology</title><idno type="ISSN">0022-5193</idno><idno type="eISSN">1095-8541</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The 2015 Middle East respiratory syndrome (MERS) outbreak in the Republic of Korea has provided an opportunity to improve our understanding of the spread of MERS linked to healthcare settings. Here we designed a dynamic transmission model to analyze the MERS outbreak in the Republic of Korea based on confirmed cases reported during the period May 20–July 4, 2015. Our model explicitly incorporates superspreading events and time-dependent transmission and isolation rates. Our model was able to provide a good fit to the trajectory of the outbreak and was useful to analyze the role of hypothetical control scenarios. Specifically, we assessed the impact of the timing of control measures, especially associated with a reduction of the transmission rate and diagnostic delays on outbreak size and duration. Early interventions within 1 week after the epidemic onset, for instance, including the initial government announcement to the public about the list of hospitals exposed to MERS coronavirus (MERS-CoV), show a promising means to reduce the size (<inline-formula><mml:math id="M1" altimg="si0016.gif" overflow="scroll"><mml:mrow><mml:mo>></mml:mo><mml:mn>71</mml:mn><mml:mo>%</mml:mo></mml:mrow></mml:math></inline-formula>) and duration (<inline-formula><mml:math id="M2" altimg="si0017.gif" overflow="scroll"><mml:mrow><mml:mo>></mml:mo><mml:mn>35</mml:mn><mml:mo>%</mml:mo></mml:mrow></mml:math></inline-formula>) of the MERS epidemic. Finally, we also present results of an uncertainty analysis focused on the role of superspreading events.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Assiri, A" uniqKey="Assiri A">A. Assiri</name></author><author><name sortKey="Mcgeer, A" uniqKey="Mcgeer A">A. 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<front><journal-meta><journal-id journal-id-type="nlm-ta">J Theor Biol</journal-id><journal-id journal-id-type="iso-abbrev">J. Theor. Biol</journal-id><journal-title-group><journal-title>Journal of Theoretical Biology</journal-title></journal-title-group><issn pub-type="ppub">0022-5193</issn><issn pub-type="epub">1095-8541</issn><publisher><publisher-name>The Author(s). Published by Elsevier Ltd.</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27521523</article-id><article-id pub-id-type="pmc">7094115</article-id><article-id pub-id-type="publisher-id">S0022-5193(16)30243-0</article-id><article-id pub-id-type="doi">10.1016/j.jtbi.2016.08.009</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>A dynamic compartmental model for the Middle East respiratory syndrome outbreak in the Republic of Korea: A retrospective analysis on control interventions and superspreading events</article-title></title-group><contrib-group><contrib contrib-type="author" id="au0005"><name><surname>Lee</surname><given-names>Jonggul</given-names></name><email>jack9872@konkuk.ac.kr</email><xref rid="aff0005" ref-type="aff">a</xref></contrib><contrib contrib-type="author" id="au0010"><name><surname>Chowell</surname><given-names>Gerardo</given-names></name><email>gchowell@gsu.edu</email><xref rid="aff0010" ref-type="aff">b</xref><xref rid="aff0015" ref-type="aff">c</xref></contrib><contrib contrib-type="author" id="au0015"><name><surname>Jung</surname><given-names>Eunok</given-names></name><email>junge@konkuk.ac.kr</email><xref rid="aff0005" ref-type="aff">a</xref><xref rid="cor1" ref-type="corresp">⁎</xref></contrib></contrib-group><aff id="aff0005"><label>a</label>Department of Mathematics, Konkuk University, Seoul 05029, Republic of Korea</aff><aff id="aff0010"><label>b</label>School of Public Health, Georgia State University, Atlanta, GA, USA</aff><aff id="aff0015"><label>c</label>Division of International Epidemiology and Population Studies, Fogarty International Center, National Institutes of Health, Bethesda, MD, USA</aff><author-notes><corresp id="cor1"><label>⁎</label>Corresponding author. <email>junge@konkuk.ac.kr</email></corresp></author-notes><pub-date pub-type="pmc-release"><day>10</day><month>8</month><year>2016</year></pub-date><pmc-comment> PMC Release delay is 0 months and 0 days and was based on .</pmc-comment>
<pub-date pub-type="ppub"><day>7</day><month>11</month><year>2016</year></pub-date><pub-date pub-type="epub"><day>10</day><month>8</month><year>2016</year></pub-date><volume>408</volume><fpage>118</fpage><lpage>126</lpage><history><date date-type="received"><day>24</day><month>5</month><year>2016</year></date><date date-type="rev-recd"><day>6</day><month>8</month><year>2016</year></date><date date-type="accepted"><day>9</day><month>8</month><year>2016</year></date></history><permissions><copyright-statement>© 2016 The Authors</copyright-statement><copyright-year>2016</copyright-year><license><license-p>Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.</license-p></license></permissions><abstract id="ab0010"><p>The 2015 Middle East respiratory syndrome (MERS) outbreak in the Republic of Korea has provided an opportunity to improve our understanding of the spread of MERS linked to healthcare settings. Here we designed a dynamic transmission model to analyze the MERS outbreak in the Republic of Korea based on confirmed cases reported during the period May 20–July 4, 2015. Our model explicitly incorporates superspreading events and time-dependent transmission and isolation rates. Our model was able to provide a good fit to the trajectory of the outbreak and was useful to analyze the role of hypothetical control scenarios. Specifically, we assessed the impact of the timing of control measures, especially associated with a reduction of the transmission rate and diagnostic delays on outbreak size and duration. Early interventions within 1 week after the epidemic onset, for instance, including the initial government announcement to the public about the list of hospitals exposed to MERS coronavirus (MERS-CoV), show a promising means to reduce the size (<inline-formula><mml:math id="M1" altimg="si0016.gif" overflow="scroll"><mml:mrow><mml:mo>></mml:mo><mml:mn>71</mml:mn><mml:mo>%</mml:mo></mml:mrow></mml:math></inline-formula>) and duration (<inline-formula><mml:math id="M2" altimg="si0017.gif" overflow="scroll"><mml:mrow><mml:mo>></mml:mo><mml:mn>35</mml:mn><mml:mo>%</mml:mo></mml:mrow></mml:math></inline-formula>) of the MERS epidemic. Finally, we also present results of an uncertainty analysis focused on the role of superspreading events.</p></abstract><abstract abstract-type="author-highlights" id="ab0015"><title>Highlights</title><p><list list-type="simple" id="li0005"><list-item id="u0005"><label>•</label><p id="p0005">A dynamic transmission model for the 2015 MERS outbreak in the Republic of Korea is proposed.</p></list-item><list-item id="u0010"><label>•</label><p id="p0010">Our model incorporates the superspreading events by pulses of infections.</p></list-item><list-item id="u0015"><label>•</label><p id="p0015">We explore the impact of the timing for hypothetical control scenarios.</p></list-item><list-item id="u0020"><label>•</label><p id="p0020">We analyze uncertainties focused on the role of superspreading events.</p></list-item></list></p></abstract><kwd-group id="keys0005"><title>Keywords</title><kwd>MERS</kwd><kwd>Superspreader</kwd><kwd>Nosocomial infections</kwd><kwd>Mathematical modeling</kwd><kwd>Republic of Korea</kwd><kwd>Infectious diseases</kwd></kwd-group></article-meta></front><body><sec id="s0005"><label>1</label><title>Introduction</title><p id="p0025">Middle East respiratory syndrome (MERS) is a fatal respiratory disease caused by a coronavirus that emerged in Saudi Arabia in 2012 (<xref rid="bib35" ref-type="bibr">Zaki et al., 2012</xref>). The major reservoir of MERS virus (MERS-CoV) responsible for infections in the human population is likely to be associated with dromedary camels (<xref rid="bib5" ref-type="bibr">Cauchemez et al., 2014</xref>, <xref rid="bib36" ref-type="bibr">Zumla et al., 2015</xref>, <xref rid="bib26" ref-type="bibr">Sabir et al., 2015</xref>). Most individuals infected with MERS-CoV develop a severe respiratory illness accompanied by cough, fever, shortness of breath, and pneumonia. As of 28 July 2016, a total of 1791 laboratory-confirmed cases including 640 deaths in 27 countries have been reported to the World Health Organization (WHO) (<xref rid="bib34" ref-type="bibr">World Health Organization, 2015c</xref>). Although countries in Africa, Asia, Europe, and North America have experienced sporadic importations of MERS from the Middle East, these have not generated local outbreaks thus far. The largest MERS outbreak outside Saudi Arabia occurred in the Republic of Korea as a result of a single importation from the Arabian Peninsula in May 2015. As of 4 July 2015, a total of 186 cases have been reported, including 38 deaths.</p><p id="p0030">Although the person-to-person transmission risk of MERS is thought to be not self-sustaining (<xref rid="bib5" ref-type="bibr">Cauchemez et al., 2014</xref>, <xref rid="bib28" ref-type="bibr">The Health Protection Agency (HPA) UK Novel Coronavirus Investigation team, 2013</xref>, <xref rid="bib7" ref-type="bibr">Chowell et al., 2014</xref>, <xref rid="bib4" ref-type="bibr">Breban et al., 2013</xref>), it has shown potential to be explosive in the nosocomial setting (<xref rid="bib1" ref-type="bibr">Assiri et al., 2013</xref>, <xref rid="bib24" ref-type="bibr">Oboho et al., 2015</xref>). Out of 186 confirmed cases in the Republic of Korea, 178 cases (98%) were related to nosocomial transmission in 17 MERS-affected healthcare facilities (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref>) and 80 cases (43%) were generated by only one infected case at the same hospital (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>) (<xref rid="f0005" ref-type="fig">Fig. 1</xref>).<fig id="f0005"><label>Fig. 1</label><caption><p>Schematic timeline for the two superspreaders (Case 14 and Case 16) in the MERS outbreak in the Republic of Korea in 2015. The thick bar indicates the date of symptom onset, and the gray diagonal patterned square represents the duration of exposure when the superspreader with symptoms visited or stayed in hospitals. The arrowhead represents the date of confirmation. The length of the arrow means the duration from symptom onset to confirmation. The dashed line means the transmission route from the index case to Case 14 and Case 16.</p></caption><alt-text id="at0005">Fig. 1</alt-text><graphic xlink:href="gr1"></graphic></fig></p><p id="p0035">The potential for high variability in the number of secondary cases or superspreading events (SSEs) is a notable characteristic of infectious diseases (<xref rid="bib19" ref-type="bibr">Lloyd-Smith et al., 2005</xref>, <xref rid="bib11" ref-type="bibr">Galvani and May 2005</xref>). Cases that generate a disproportionate number of secondary cases tend to occur during the early stage of an epidemic (<xref rid="bib29" ref-type="bibr">Transmission Dynamics and Control of Severe Acute Respiratory Syndrome, 2003</xref>, <xref rid="bib13" ref-type="bibr">Goh et al., 2006</xref>). Conversely, unlike “superspreaders”, the typical individuals tend to infect only a few or no cases at all. In recent works on the MERS outbreak (<xref rid="bib8" ref-type="bibr">Chowell et al., 2015</xref>, <xref rid="bib23" ref-type="bibr">Nishiura et al., 2015</xref>, <xref rid="bib18" ref-type="bibr">Kucharski and Althaus, 2015</xref>, <xref rid="bib3" ref-type="bibr">Blumberg and Lloyd-Smith, 2013</xref>), this individual variation has been described by transmission heterogeneity. Based on the stochastic approach, it is assumed that the number of secondary cases caused by each infected individual is negative binomial distributed with mean <inline-formula><mml:math id="M3" altimg="si0018.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> and dispersion parameter <italic>k</italic> (with lower value representing higher heterogeneity, and vice versa). In this framework, SSEs during the recent MERS outbreaks can be explained by the high dispersion nature of the distribution of the number of secondary cases per case. For example, <xref rid="bib8" ref-type="bibr">Chowell et al. (2015)</xref> estimated that the mean <inline-formula><mml:math id="M4" altimg="si0019.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> for the MERS outbreaks was below the epidemic threshold value of 1 while the dispersion parameter <italic>k</italic> was estimated at 0.06, indicating high heterogeneity in the potential number of secondary cases. Simulations indicated that the probability of observing outbreaks larger than the MERS outbreak in the Republic of Korea is only of the order of 1%. However, this requires careful interpretation because SSEs during outbreaks might be treated as outliers rather than observations stemming from a highly over dispersed distribution. At the same time, infectious diseases with subcritical <inline-formula><mml:math id="M5" altimg="si0020.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> and overdispersed <italic>k</italic> are more likely to subside within just a few disease generations.</p><p id="p0040">Currently, no vaccine or antiviral treatment against MERS-CoV infection (<xref rid="bib33" ref-type="bibr">World Health Organization, 2015b</xref>) is available. Although early intervention strategies such as fast diagnosis and quarantine of suspected cases have proved to be the most effective control measures for rapidly mitigating a MERS outbreak (<xref rid="bib28" ref-type="bibr">The Health Protection Agency (HPA) UK Novel Coronavirus Investigation team, 2013</xref>, <xref rid="bib4" ref-type="bibr">Breban et al., 2013</xref>, <xref rid="bib23" ref-type="bibr">Nishiura et al., 2015</xref>, <xref rid="bib18" ref-type="bibr">Kucharski and Althaus, 2015</xref>, <xref rid="bib2" ref-type="bibr">Banik et al., 2015</xref>). The mean duration from symptom onset to diagnosis of MERS-CoV infection of the outbreak in the Republic of Korea was estimated in the range of 4–8 days (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref>, <xref rid="bib9" ref-type="bibr">Cowling et al., 2015</xref>). Although it decreased once intense contact tracing activities were implemented, a significant delay in diagnosis was observed in the early stage of the outbreak in the Republic of Korea, which is one of the critical features that facilitated the outbreak.</p><p id="p0045">Most studies on the MERS outbreak in the Republic of Korea have focused on inferring the probability of a large outbreak size by analyzing the distribution of cluster sizes (<xref rid="bib23" ref-type="bibr">Nishiura et al., 2015</xref>, <xref rid="bib18" ref-type="bibr">Kucharski and Althaus, 2015</xref>). To the best of our knowledge, there is no dynamic compartmental model for the MERS outbreak in the Republic of Korea that incorporates the role of SSEs and the time-dependent parameters associated with the impact of early interventions. In this work, we develop a mathematical model that is consistent with consolidated retrospective investigations of previous MERS outbreaks. Our calibrated model provides a basis to analyze the hypothetical impact of intervention strategies. Furthermore, by analyzing the variation in infectiousness of the superspreaders, we explore the uncertainty associated with the SSEs.</p></sec><sec id="s0010"><label>2</label><title>Materials and methods</title><sec id="s0015"><label>2.1</label><title>Epidemic data</title><p id="p0050">Data on daily laboratory-confirmed MERS cases for the outbreak in the Republic of Korea were obtained from the Korea Center for Disease Control and Prevention (KCDC) (<xref rid="bib17" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2016</xref>). The KCDC reported 186 cases including a case confirmed in China and 38 deaths since May 20, 2015, which is the day the index case was confirmed. No additional confirmed cases have been reported since 4 July, and the Korean government declared the end of MERS-CoV transmission in the Republic of Korea on December 23, 2015 by WHO standards (<xref rid="bib17" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2016</xref>).</p><p id="p0055">The index case of the MERS outbreak in the Republic of Korea was a businessman who took a trip to the Middle East and returned on May 4 (<xref rid="bib8" ref-type="bibr">Chowell et al., 2015</xref>, <xref rid="bib9" ref-type="bibr">Cowling et al., 2015</xref>, <xref rid="bib32" ref-type="bibr">World Health Organization, 2015</xref>). Showing symptoms of respiratory problems on May 11, he visited several hospitals, was admitted to a hospital on May 15 and discharged on May 17, and finally diagnosed with MERS on May 20. Consequently, the index case generated multiple exposures, infecting 28 people including the two patients, Case 14 and Case 16, who in turn generated over 50% of the total cases reported in the Republic of Korea.</p><p id="p0060">Most cases were related to nosocomial transmission or hospital-to-hospital transmission in 17 MERS-affected healthcare facilities (<xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref>). Of the 186 cases, 82 were inpatients who shared the same room, ward, or emergency room; 65 were their family members or visitors; and 39 were medical professionals or staff. A number of cases had been exposed in badly ventilated and crowded places such as the emergency room with unisolated patients who had respiratory diseases. More than three healthcare workers were infected by confirmed cases when providing treatment without wearing proper personal protective equipment.</p><p id="p0065">In our study, we developed a model for the MERS outbreak in the nosocomial setting and investigated the role of superspreaders in the transmission dynamics. We defined the superspreaders as those who transmit the virus to more than 20 patients and have underlying respiratory diseases with a severe cough (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref>). Case 14 and Case 16 were considered to be “superspreaders” in our model (see <xref rid="f0005" ref-type="fig">Fig. 1</xref>). Because our model was simulated based on the data according to the day of lab-confirmation, 28 cases exposed by the index case before May 20, the day on which our simulations start, were used as initial conditions. Case 14 and Case 16 were inpatients staying with the index case in the same ward at Pyengtaek St. Mary's Hospital and were exposed to MERS-CoV infection from May 15 to 17. Developing MERS-CoV symptoms with fever, Case 14 visited the emergency room at Samsung Medical Center on May 27 and stayed there for 3 days before he was confirmed on May 30. During this period, 80 tertiary cases—approximately 43% of the total cases of MERS-CoV infection in the Republic of Korea—were infected in the same hospital by Case 14. Case 16 developed symptoms on May 20, and he generated a total of 24 tertiary infections at Dae Cheong Hospital and Konyang University Hospital from May 22 to 30. These two large clusters in the nosocomial setting caused the epidemic peak on June 7.</p></sec><sec id="s0020"><label>2.2</label><title>Mathematical model of the MERS outbreak incorporating the SSEs</title><p id="p0070">We developed a dynamic transmission model for the MERS outbreak in the Republic of Korea based on a SEIR compartmental modeling framework that incorporates time-dependent parameters and pulses of intensified transmission that captures SSEs. We assumed a nosocomial infection in our model. The entire population stays at hospitals and consists of five epidemiological compartments: susceptible (<italic>S</italic>), exposed (<italic>E</italic>), infectious (<italic>I</italic>), isolated (<italic>J</italic>), and removed (<italic>R</italic>). Therefore, people who stay in a hospital and are not exposed to MERS are susceptible individuals, <italic>S</italic>, such as inpatients, outpatients, family members, healthcare workers, or visitors. The susceptible individuals, <italic>S</italic>, who have effective contacts with the infected individuals, <italic>I,</italic><italic>J</italic>, and the superspreaders, are exposed to MERS-CoV. Following the mean incubation period, <inline-formula><mml:math id="M6" altimg="si0021.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula>, the exposed individuals, <italic>E</italic>, show symptoms and become infectious individuals, <italic>I</italic>. Note that, in this phase, people with illness might not be entirely under isolation before the case confirmation by laboratory means. After showing symptoms for a mean duration of <inline-formula><mml:math id="M7" altimg="si0022.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mi>α</mml:mi></mml:mrow></mml:math></inline-formula> days, patients would be classified as laboratory-confirmed cases, <italic>J</italic>. Then, these individuals are immediately transferred to hospitals for MERS-CoV treatment and are isolated in an intensive care unit which is restricted to only healthcare staff with personal protective equipment (<xref rid="bib17" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2016</xref>). The isolated individuals, <italic>J</italic>, are discharged from the hospital as cured or dead after <inline-formula><mml:math id="M8" altimg="si0023.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mi>γ</mml:mi></mml:mrow></mml:math></inline-formula> days on average. The transmission dynamics of MERS-CoV shown in <xref rid="f0010" ref-type="fig">Fig. 2</xref> is then modeled by the following system of nonlinear ordinary differential equations:<disp-formula id="eq0005"><label>(1)</label><mml:math id="M9" altimg="si0024.gif" overflow="scroll"><mml:mrow><mml:mfrac><mml:mrow><mml:mi mathvariant="italic">dS</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">dt</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mo>−</mml:mo><mml:mi>β</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi>I</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">lJ</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>N</mml:mi><mml:mo>−</mml:mo><mml:munderover><mml:mrow><mml:mo>∑</mml:mo></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:munderover><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>−</mml:mo><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo><mml:mo>−</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>−</mml:mo><mml:mo>(</mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>δ</mml:mi><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mi>S</mml:mi><mml:mo>/</mml:mo><mml:mi>N</mml:mi><mml:mo>,</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="italic">dE</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">dt</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mi>β</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi>I</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">lJ</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>N</mml:mi><mml:mo>+</mml:mo><mml:munderover><mml:mrow><mml:mo>∑</mml:mo></mml:mrow><mml:mrow><mml:mi>i</mml:mi><mml:mo>=</mml:mo><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mi>m</mml:mi></mml:mrow></mml:munderover><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>−</mml:mo><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo><mml:mo>−</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>−</mml:mo><mml:mo>(</mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>δ</mml:mi><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mo>)</mml:mo><mml:mi>S</mml:mi><mml:mo>/</mml:mo><mml:mi>N</mml:mi><mml:mo>−</mml:mo><mml:mi mathvariant="italic">kE</mml:mi><mml:mo>,</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="italic">dI</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">dt</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mi mathvariant="italic">kE</mml:mi><mml:mo>−</mml:mo><mml:mi>α</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>I</mml:mi><mml:mo>,</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="italic">dJ</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">dt</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mi>α</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mi>I</mml:mi><mml:mo>−</mml:mo><mml:mi>γ</mml:mi><mml:mi>J</mml:mi><mml:mo>,</mml:mo><mml:mfrac><mml:mrow><mml:mi mathvariant="italic">dR</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">dt</mml:mi></mml:mrow></mml:mfrac><mml:mo>=</mml:mo><mml:mi>γ</mml:mi><mml:mi>J</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>where <italic>N</italic> is the total population, and <italic>H</italic>(<italic>t</italic>) is a heaviside function.<fig id="f0010"><label>Fig. 2</label><caption><p>Flow chart of the transmission dynamics for MERS with the superspreaders. The red dashed line represents the force of infection by superspreaders. (For interpretation of the references to color in this figure caption, the reader is referred to the web version of this paper.)</p></caption><alt-text id="at0010">Fig. 2</alt-text><graphic xlink:href="gr2"></graphic></fig></p><p id="p0075">In this model, there are three ways that the pathogen spreads to the host population: by infectious individuals, isolated individuals, and superspreaders. The <italic>I</italic> class, who has common initial symptoms including fever, cough, and myalgia, would be misdiagnosed as having a common cold in the beginning of an outbreak for emerging infectious diseases such as the MERS epidemic in the Republic of Korea. Because the <italic>I</italic> class is likely to be isolated improperly, in the nosocomial setting, it can transmit the virus to the <italic>S</italic> class at transmission rate <italic>β</italic>. Although the <italic>J</italic> class is isolated to a negative-pressure room, a few of its members could transmit the virus, by accident, to other people such as healthcare workers. We assumed that they have less infectiousness with the reduction factor <italic>l</italic>. Hence, the force of infection by <italic>I</italic> and <italic>J</italic> is defined by<disp-formula id="eq0010"><mml:math id="M10" altimg="si0025.gif" overflow="scroll"><mml:mrow><mml:mi>λ</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>β</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>(</mml:mo><mml:mi>I</mml:mi><mml:mo>+</mml:mo><mml:mi mathvariant="italic">lJ</mml:mi><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mi>N</mml:mi><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>Since the superspreaders played a major role for the MERS outbreak in the Republic of Korea, we considered the force of infection by superspreaders separately in our model. The superspreaders have abnormally high transmissibility because of bad circumstances and personal health status, such as poor ventilation in a ward and excessive clinical symptoms including cough (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib8" ref-type="bibr">Chowell et al., 2015</xref>, <xref rid="bib27" ref-type="bibr">Stein, 2011</xref>). This transmission heterogeneity was deterministically incorporated with a heaviside function during a specific time interval, <inline-formula><mml:math id="M11" altimg="si0026.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, representing the exposed period of the <italic>i</italic>-th SSE beginning at time <italic>t</italic><sub><italic>i</italic></sub>. The force of infection by the <italic>i</italic>-th superspreader is then given by<disp-formula id="eq0015"><mml:math id="M12" altimg="si0027.gif" overflow="scroll"><mml:mrow><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>λ</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo stretchy="true">(</mml:mo><mml:mrow><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>−</mml:mo><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo><mml:mo>−</mml:mo><mml:mi>H</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>−</mml:mo><mml:mo>(</mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>δ</mml:mi><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>)</mml:mo><mml:mo>)</mml:mo></mml:mrow><mml:mo stretchy="true">)</mml:mo><mml:mo>/</mml:mo><mml:mi>N</mml:mi><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>where <inline-formula><mml:math id="M13" altimg="si0028.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> is the individual transmission rate for the <italic>i</italic>-th superspreader. Note that the probability that a susceptible individual may have contact with a certain superspreader among the total population <italic>N</italic> is considered by <inline-formula><mml:math id="M14" altimg="si0029.gif" overflow="scroll"><mml:mfrac><mml:mrow><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mi>N</mml:mi></mml:mrow></mml:mfrac></mml:math></inline-formula>.</p><p id="p0080">Control measures by the government and behavioral changes in communities cause the transmission and isolation rates over time to vary. We considered that the transmission rate, <inline-formula><mml:math id="M15" altimg="si0030.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula>, and isolation rate, <inline-formula><mml:math id="M16" altimg="si0031.gif" overflow="scroll"><mml:mrow><mml:mi>α</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula>, are both defined as a step function, allowing the changes at <italic>τ</italic> days after the onset of the outbreak, as follows:<disp-formula id="eq0020"><mml:math id="M17" altimg="si0032.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo stretchy="true">{</mml:mo><mml:mrow><mml:mtable><mml:mtr><mml:mtd columnalign="left"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">pre</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mtd><mml:mtd columnalign="left"><mml:mi>if</mml:mi><mml:mspace width="0.33em"></mml:mspace><mml:mi>t</mml:mi><mml:mo><</mml:mo><mml:mi>τ</mml:mi><mml:mo>,</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd columnalign="left"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">post</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mtd><mml:mtd columnalign="left"><mml:mi>otherwise</mml:mi><mml:mo>,</mml:mo></mml:mtd></mml:mtr></mml:mtable></mml:mrow><mml:mspace width="1.0em"></mml:mspace><mml:mi>and</mml:mi><mml:mspace width="1.0em"></mml:mspace><mml:mi>α</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mo stretchy="true">{</mml:mo><mml:mrow><mml:mtable><mml:mtr><mml:mtd columnalign="left"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>α</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">pre</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mtd><mml:mtd columnalign="left"><mml:mi>if</mml:mi><mml:mspace width="0.33em"></mml:mspace><mml:mi>t</mml:mi><mml:mo><</mml:mo><mml:mi>τ</mml:mi><mml:mo>,</mml:mo></mml:mtd></mml:mtr><mml:mtr><mml:mtd columnalign="left"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>α</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">post</mml:mi></mml:mrow></mml:msub><mml:mo>,</mml:mo></mml:mtd><mml:mtd columnalign="left"><mml:mi>otherwise</mml:mi><mml:mo>,</mml:mo></mml:mtd></mml:mtr></mml:mtable></mml:mrow></mml:mrow></mml:math></disp-formula>where <italic>τ</italic> is the time when interventions start. Note that <inline-formula><mml:math id="M18" altimg="si0033.gif" overflow="scroll"><mml:mrow><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">pre</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo>></mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">post</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M19" altimg="si0034.gif" overflow="scroll"><mml:mrow><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>α</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">pre</mml:mi></mml:mrow></mml:msub></mml:mrow><mml:mo><</mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>α</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">post</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (see <xref rid="t0005" ref-type="table">Table 1</xref>).<table-wrap position="float" id="t0005"><label>Table 1</label><caption><p>Epidemiological parameters.</p></caption><alt-text id="at0045">Table 1</alt-text><table frame="hsides" rules="groups"><thead><tr><th>Symbol</th><th>Description</th><th>Baseline value</th><th>Sources</th></tr></thead><tbody><tr><td><italic>β</italic><sub><italic>pre</italic></sub></td><td>Transmission rate during pre-intervention</td><td>0.085 (1/days)</td><td>Data fitting</td></tr><tr><td><italic>β</italic><sub><italic>post</italic></sub></td><td>Transmission rate during post-intervention</td><td>0.041 (1/days)</td><td>Data fitting</td></tr><tr><td><inline-formula><mml:math id="M20" altimg="si0006.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula></td><td>Secondary cases reproduced by Case 14</td><td>80</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref></td></tr><tr><td><inline-formula><mml:math id="M21" altimg="si0007.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula></td><td>Secondary cases reproduced by Case 16</td><td>24</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref></td></tr><tr><td><italic>t</italic><sub>1</sub></td><td>Starting time of the first SSE (after the outbreak onset)</td><td>7 (days)</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref></td></tr><tr><td><italic>t</italic><sub>2</sub></td><td>Starting time of the second SSE (after the outbreak onset)</td><td>2 (days)</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref></td></tr><tr><td><inline-formula><mml:math id="M22" altimg="si0008.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mn>1</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></td><td>Duration of exposure by Case 14</td><td>3 (days)</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref></td></tr><tr><td><inline-formula><mml:math id="M23" altimg="si0009.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></td><td>Duration of exposure by Case 16</td><td>8 (days)</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref></td></tr><tr><td><italic>l</italic></td><td>Contact reduction of isolated individuals after the case is confirmed</td><td>0.1</td><td>Assumed</td></tr><tr><td><inline-formula><mml:math id="M24" altimg="si0010.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mi>k</mml:mi></mml:mrow></mml:math></inline-formula></td><td>Mean incubation period</td><td>6.83 (days)</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref></td></tr><tr><td><inline-formula><mml:math id="M25" altimg="si0011.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>α</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">pre</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></td><td>Mean duration from illness onset to diagnosis during pre-intervention</td><td>6 (days)</td><td><xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref></td></tr><tr><td><inline-formula><mml:math id="M26" altimg="si0012.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>α</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">post</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula></td><td>Mean duration from illness onset to diagnosis during post-intervention</td><td>2 (days)</td><td><xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref></td></tr><tr><td><inline-formula><mml:math id="M27" altimg="si0013.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mi>γ</mml:mi></mml:mrow></mml:math></inline-formula></td><td>Mean period of hospital stay</td><td>13 (days)</td><td><xref rid="bib17" ref-type="bibr">Korea Centers for Disease Control and Prevention (2016)</xref></td></tr><tr><td><italic>τ</italic></td><td>Time when interventions are carried out (after the outbreak onset)</td><td>18 (days)</td><td><xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref></td></tr></tbody></table></table-wrap></p><p id="p0085">The SSE by the index case was imposed on the initial condition for the MERS model <xref rid="eq0005" ref-type="disp-formula">(1)</xref>. Because the model was fitted to the data according to day of case confirmation, the secondary cases generated by the index case were considered in the initial condition. The first and second confirmed cases were reported on May 20, 2015. At that time, it was revealed by the KCDC's epidemiological investigation that, of 28 secondary cases, 16 were exposed and 10 were infected (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>). Therefore, assuming that there was a total of 10,000 people in healthcare facilities, we set the initial values as <inline-formula><mml:math id="M28" altimg="si0035.gif" overflow="scroll"><mml:mrow><mml:mi>S</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>10</mml:mn><mml:mo>,</mml:mo><mml:mn>000</mml:mn><mml:mo>−</mml:mo><mml:mi>E</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>−</mml:mo><mml:mi>I</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>−</mml:mo><mml:mi>J</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M29" altimg="si0036.gif" overflow="scroll"><mml:mrow><mml:mi>E</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>16</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M30" altimg="si0037.gif" overflow="scroll"><mml:mrow><mml:mi>I</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>10</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M31" altimg="si0038.gif" overflow="scroll"><mml:mrow><mml:mi>J</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>2</mml:mn></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M32" altimg="si0039.gif" overflow="scroll"><mml:mrow><mml:mi>R</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mn>0</mml:mn><mml:mo stretchy="false">)</mml:mo><mml:mo>=</mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:math></inline-formula>.</p></sec><sec id="s0025"><label>2.3</label><title>Parameter estimation</title><p id="p0090">In this work, most of the parameters were referred from the report of the KCDC's epidemiological investigation of the MERS outbreak (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>). The mean incubation period, 1/<italic>k</italic>, was chosen as 6.83 days (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref>, <xref rid="bib9" ref-type="bibr">Cowling et al., 2015</xref>, <xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref>, <xref rid="bib25" ref-type="bibr">Park et al., 2015</xref>). The mean period from isolation to discharge, 1/<italic>γ</italic>, was estimated at 13 days, which is the median for all discharged cases. The transmission rate of the isolated individuals, <italic>J</italic>, was assumed as 10% of that of the infectious individuals, <italic>I</italic>. Therefore, the reduction factor for the transmissibility of <italic>J</italic> was set at <italic>l</italic>=0.1.</p><p id="p0095">The time when the levels of <inline-formula><mml:math id="M33" altimg="si0040.gif" overflow="scroll"><mml:mrow><mml:mi>α</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M34" altimg="si0041.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> are changed, <italic>τ</italic>, was estimated at 18 days after the outbreak onset, based on the case data for the duration from symptom onset to confirmation (<xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib15" ref-type="bibr">Ki, 2015</xref>). At that time, the government announced the list of hospitals exposed to MERS (<xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>, <xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref>), so people in the community or at these hospitals paid more attention to the spread of MERS. Empirical evidence indicates that behavioral changes could make the nosocomial transmissibility decrease significantly (<xref rid="bib31" ref-type="bibr">Wallinga and Teunis, 2004</xref>). Additionally, the government allowed the diagnostic testing for MERS to be performed at authorized health facilities in order to shorten the duration of diagnosis (<xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref>). The median value of duration from symptom onset to laboratory confirmation was significantly shortened after June 7 (from 6 days to 2 days).</p><p id="p0100">The time-dependent transmission rate, <inline-formula><mml:math id="M35" altimg="si0042.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula>, was estimated by fitting the model prediction, <inline-formula><mml:math id="M36" altimg="si0043.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>C</mml:mi></mml:mrow><mml:mrow><mml:mi>I</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mover><mml:mrow><mml:mo>=</mml:mo></mml:mrow><mml:mrow><mml:mi>def</mml:mi></mml:mrow></mml:mover><mml:mrow><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mo>∫</mml:mo></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow><mml:mrow><mml:mi>t</mml:mi></mml:mrow></mml:msubsup></mml:mrow><mml:mi>α</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>s</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mi>I</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>s</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mi mathvariant="italic">ds</mml:mi></mml:mrow></mml:math></inline-formula>, to the observed cumulative number of confirmed cases. Using the MATLAB routine <italic>lsqcurvefit</italic>, which solves nonlinear least squares problems, we obtained the data-fitted transmission rates as <inline-formula><mml:math id="M37" altimg="si0044.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">pre</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>0.085</mml:mn></mml:mrow></mml:math></inline-formula> (95% CI: 0.0760–0.0937) and <inline-formula><mml:math id="M38" altimg="si0045.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi mathvariant="italic">post</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>0.041</mml:mn></mml:mrow></mml:math></inline-formula> (95% CI: 0.0246–0.0579).</p><p id="p0105">The individual transmission rate for the <italic>i</italic>-th superspreader, <inline-formula><mml:math id="M39" altimg="si0046.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, was obtained from the relation between the individual reproductive number for the <italic>i</italic>-th superspreader, <inline-formula><mml:math id="M40" altimg="si0047.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>, and the duration of exposure by the <italic>i</italic>-th superspreader, <inline-formula><mml:math id="M41" altimg="si0048.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, i.e., <inline-formula><mml:math id="M42" altimg="si0049.gif" overflow="scroll"><mml:mrow><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>/</mml:mo><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. We estimated <inline-formula><mml:math id="M43" altimg="si0050.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula> as the number of secondary cases in the <italic>i</italic>-th SSE. <inline-formula><mml:math id="M44" altimg="si0051.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> was not estimated as an infectious period of the <italic>i</italic>-th superspreader, but as the duration of exposure when effective contacts occurred in the nosocomial setting. These were obtained from the results of the KCDC's epidemiological investigation (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>): <inline-formula><mml:math id="M45" altimg="si0052.gif" overflow="scroll"><mml:mrow><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mn>80</mml:mn></mml:mrow></mml:math></inline-formula> during <inline-formula><mml:math id="M46" altimg="si0053.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mn>1</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>3</mml:mn></mml:mrow></mml:math></inline-formula> days and <inline-formula><mml:math id="M47" altimg="si0054.gif" overflow="scroll"><mml:mrow><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>R</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup><mml:mo>=</mml:mo><mml:mn>24</mml:mn></mml:mrow></mml:math></inline-formula> during <inline-formula><mml:math id="M48" altimg="si0055.gif" overflow="scroll"><mml:mrow><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mn>2</mml:mn></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mn>8</mml:mn></mml:mrow></mml:math></inline-formula> days (see <xref rid="f0005" ref-type="fig">Fig. 1</xref>).</p><p id="p0110">The basic reproductive number gives us the information whether an infectious disease can spread to a susceptible population in a steady state (<xref rid="bib10" ref-type="bibr">Diekmann et al., 1990</xref>). Generally, <inline-formula><mml:math id="M49" altimg="si0056.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mn>0</mml:mn></mml:mrow></mml:msub></mml:math></inline-formula> could be obtained from the generation matrix for a compartmental disease transmission model (<xref rid="bib30" ref-type="bibr">Van Den Driessche and Watmough, 2002</xref>). In this work we estimate the effective reproductive number, <inline-formula><mml:math id="M50" altimg="si0057.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>e</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula>, which is the time-dependent reproductive number reflecting the impact of control measures (<xref rid="bib22" ref-type="bibr">Nishiura and Chowell, 2009</xref>).</p><p id="p0115">For our model <xref rid="eq0005" ref-type="disp-formula">(1)</xref>, the effective reproductive number without the pulse of infection is given by<disp-formula id="eq0025"><label>(2)</label><mml:math id="M51" altimg="si0058.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>e</mml:mi></mml:mrow></mml:msub><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mi>β</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo><mml:mfrac><mml:mrow><mml:mi>S</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow><mml:mrow><mml:mi>N</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac><mml:mo stretchy="true">(</mml:mo><mml:mrow><mml:mfrac><mml:mrow><mml:mn>1</mml:mn></mml:mrow><mml:mrow><mml:mi>α</mml:mi><mml:mo>(</mml:mo><mml:mi>t</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:mfrac><mml:mo>+</mml:mo><mml:mfrac><mml:mrow><mml:mi>l</mml:mi></mml:mrow><mml:mrow><mml:mi>γ</mml:mi></mml:mrow></mml:mfrac></mml:mrow><mml:mo stretchy="true">)</mml:mo><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>We estimated <inline-formula><mml:math id="M52" altimg="si0059.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>e</mml:mi></mml:mrow></mml:msub><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo><mml:mo><</mml:mo><mml:mn>1</mml:mn></mml:mrow></mml:math></inline-formula> for all <inline-formula><mml:math id="M53" altimg="si0060.gif" overflow="scroll"><mml:mrow><mml:mi>t</mml:mi><mml:mo>></mml:mo><mml:mn>0</mml:mn></mml:mrow></mml:math></inline-formula> (<xref rid="f0015" ref-type="fig">Fig. 3</xref>).<fig id="f0015"><label>Fig. 3</label><caption><p>The effective reproductive number.</p></caption><alt-text id="at0015">Fig. 3</alt-text><graphic xlink:href="gr3"></graphic></fig></p></sec><sec id="s0030"><label>2.4</label><title>Early interventions</title><p id="p0120">To investigate the effects of early interventions, we varied <italic>τ</italic> and fixed the estimated values of associated parameters with <inline-formula><mml:math id="M54" altimg="si0061.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M55" altimg="si0062.gif" overflow="scroll"><mml:mrow><mml:mi>α</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> as the baseline values in <xref rid="t0005" ref-type="table">Table 1</xref>. The total number of confirmed cases and the duration of the outbreak were investigated by varying <italic>τ</italic> from 1 to 18. The outbreak duration was measured during times until the daily number of new confirmed cases was decreasing and sufficiently small. The proportionate reductions of the outbreak duration and size were calculated by using the baseline results at <inline-formula><mml:math id="M56" altimg="si0063.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula>. We assumed that the control measures for <inline-formula><mml:math id="M57" altimg="si0064.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M58" altimg="si0065.gif" overflow="scroll"><mml:mrow><mml:mi>α</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> were effectively carried out to prevent transmission of the virus. For example, the list of hospitals that were exposed to MERS patients was announced to the public on June 7. After that, people changed their behaviors such as avoiding visiting hospitals, wearing an N95 mask, and using hand sanitizers. At that time, the health authorities expanded the screening capacity for rapid diagnosis. These control measures could help detect suspected cases during their infectious period or even before the onset of symptoms. Such interventions could prevent the occurrence of SSEs because the potential superspreaders were immediately isolated after being confirmed with MERS infection.</p></sec><sec id="s0035"><label>2.5</label><title>Probability distributions for the SSEs</title><p id="p0125">We investigated the uncertainty of SSEs by using the probability distributions for the timing and size of the events. SSEs tend to occur during the early stage of an outbreak when the presence of disease is not yet identified by public health authorities (<xref rid="bib19" ref-type="bibr">Lloyd-Smith et al., 2005</xref>). If identification of the superspreaders is delayed, a substantially large number of cases proportional to the duration of exposure are likely to be generated. Hence, we assumed that potential SSEs occur during the first few days of the introduction of the disease. This allows for variations in the timing of occurrence of the SSE and in the sizes of secondary cases produced by a superspreader while the duration of exposure was predetermined in simulations.</p><p id="p0130">To investigate the uncertainty of SSEs, we assumed the number of secondary cases by the superspreaders as a uniform distribution in the range of <inline-formula><mml:math id="M59" altimg="si0066.gif" overflow="scroll"><mml:mrow><mml:mo stretchy="false">[</mml:mo><mml:mn>0.5</mml:mn><mml:mo>,</mml:mo><mml:mspace width="0.33em"></mml:mspace><mml:mn>1.5</mml:mn><mml:mo stretchy="false">]</mml:mo><mml:mo>×</mml:mo><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:mrow></mml:math></inline-formula>. The truncated exponential decay distribution was used for the beginning of a SSE. The two superspreaders, Case 14 and Case 16, were exposed by the index case on May 17. Adding the maximum value of the incubation period, 14 days, to the illness onset of the superspreaders, we found the feasible periods for the truncated interval of the exponential decay distribution. Because the outbreak began on May 20 (i.e., <italic>t</italic>=0), the truncated interval was determined as <inline-formula><mml:math id="M60" altimg="si0067.gif" overflow="scroll"><mml:mrow><mml:mo stretchy="false">[</mml:mo><mml:mn>1</mml:mn><mml:mo>,</mml:mo><mml:mn>11</mml:mn><mml:mo stretchy="false">]</mml:mo></mml:mrow></mml:math></inline-formula>. However, different mean values for the exponential distribution were used in order to consider the individual variability of the SSE (see Supplementary Figure S1). Note that the abbreviations ‘SSE 1′ and ‘SSE 2′ denote the SSEs caused by Case 14 and Case 16, respectively.</p></sec></sec><sec id="s0040"><label>3</label><title>Results</title><sec id="s0045"><label>3.1</label><title>Model fitting</title><p id="p0135">The fit of the model to the temporal evolution of the MERS outbreak in the Republic of Korea from May 20 is shown in <xref rid="f0020" ref-type="fig">Fig. 4</xref>. The daily and cumulative numbers of laboratory-confirmed cases for MERS-CoV from our model (solid curves) showed qualitatively good fit to the data (squares) because the effects of superspreaders were applied to the model at appropriate times. Our calibrated model indicates that the epidemic reached its peak on June 7, then gradually decreased to zero as in the real data. In <xref rid="bib14" ref-type="bibr">Hsieh (2015)</xref>, the author deduced that May 27–29 was the period of the turning point for disease infection and the serial interval for the MERS outbreak was estimated as 12.5 days in <xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention (2015)</xref>. Then the turning point for the confirmed cases might have occurred during June 8–10. This is similar to the peak of incidence (confirmed cases) by the two superspreaders on June 7.<fig id="f0020"><label>Fig. 4</label><caption><p>The fit of the model to the temporal evolution of the MERS outbreak in the Republic of Korea from May 20. The daily number of laboratory-confirmed cases (A) and the cumulative number of laboratory-confirmed cases (B) are shown at the left and right frames, respectively. The model parameters are given in <xref rid="t0005" ref-type="table">Table 1</xref>.</p></caption><alt-text id="at0020">Fig. 4</alt-text><graphic xlink:href="gr4"></graphic></fig></p></sec><sec id="s0050"><label>3.2</label><title>Effects of the early interventions</title><p id="p0140">The impact of the control measures was investigated by varying the parameter <italic>τ</italic>, which plays an important role in the time-dependent parameters, <inline-formula><mml:math id="M61" altimg="si0068.gif" overflow="scroll"><mml:mrow><mml:mi>α</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M62" altimg="si0069.gif" overflow="scroll"><mml:mrow><mml:mi>β</mml:mi><mml:mo stretchy="false">(</mml:mo><mml:mi>t</mml:mi><mml:mo stretchy="false">)</mml:mo></mml:mrow></mml:math></inline-formula>. <xref rid="f0025" ref-type="fig">Fig. 5</xref>shows the impact of <italic>τ</italic> on the outbreak size and duration. In <xref rid="f0025" ref-type="fig">Fig. 5</xref>(A), the cumulative numbers of cases as functions of time after onset are shown for the baseline value, <inline-formula><mml:math id="M63" altimg="si0070.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula> (thick black curve), and smaller values, <inline-formula><mml:math id="M64" altimg="si0071.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>≤</mml:mo><mml:mi>τ</mml:mi><mml:mo>≤</mml:mo><mml:mn>17</mml:mn></mml:mrow></mml:math></inline-formula> (thin gray curves). The proportionate reductions of outbreak size (cross) and outbreak duration (square) with respect to <italic>τ</italic> are plotted in <xref rid="f0025" ref-type="fig">Fig. 5</xref>(B). For the baseline value, <inline-formula><mml:math id="M65" altimg="si0072.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula>, the outbreak size and duration were 188.7 total cases and 64.9 days, respectively. At a glance, smaller values of <italic>τ</italic> than the baseline value shows a decreasing effect on outbreak size and duration. Especially, when <inline-formula><mml:math id="M66" altimg="si0073.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>≤</mml:mo><mml:mn>7</mml:mn></mml:mrow></mml:math></inline-formula>, the outbreak sizes are less than 60 total cases (<inline-formula><mml:math id="M67" altimg="si0074.gif" overflow="scroll"><mml:mrow><mml:mo>></mml:mo><mml:mn>71</mml:mn><mml:mo>%</mml:mo></mml:mrow></mml:math></inline-formula> reduction) and the outbreak durations are within 50 days (<inline-formula><mml:math id="M68" altimg="si0075.gif" overflow="scroll"><mml:mrow><mml:mo>></mml:mo><mml:mn>35</mml:mn><mml:mo>%</mml:mo></mml:mrow></mml:math></inline-formula> reduction). This result suggests how important the early interventions were in mitigating the MERS outbreak in the Republic of Korea. For instance, if the government had announced the list of MERS-exposed hospitals to the public less than 1 week after the onset, the outbreak size might have been dramatically reduced.<fig id="f0025"><label>Fig. 5</label><caption><p>Impact of early interventions by varying the parameter <italic>τ</italic> in the range from 1 (May 21) to 18 (June 7). (A) The epidemic curves for the cumulative number of cases as functions of time after the onset of the outbreak are shown for the default <italic>τ</italic> (thick black curve) and the smaller ones (thin gray curves). (B) The reductions in outbreak size (cross) and outbreak duration (square) with respect to <italic>τ</italic> are plotted.</p></caption><alt-text id="at0025">Fig. 5</alt-text><graphic xlink:href="gr5"></graphic></fig></p></sec><sec id="s0055"><label>3.3</label><title>Uncertainty analysis of the SSEs</title><p id="p0145">The uncertainty of the SSEs was investigated by drawing the size of SSE from a uniform distribution and/or the timing of the events from a truncated exponential distribution. <xref rid="f0030" ref-type="fig">Fig. 6</xref>shows the distributions of outbreak duration and size obtained from the simulations, allowing the variation in the size and initial timing for the occurrence of the SSE when <inline-formula><mml:math id="M69" altimg="si0076.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula> (top) and <inline-formula><mml:math id="M70" altimg="si0077.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula> (bottom). The different distributions of SSE 1 only (black dot), SSE 2 only (green cross), and both (blue plus) are shown. The yellow square represents the outbreak duration and size from the model <xref rid="eq0005" ref-type="disp-formula">(1)</xref> with baseline parameters.<fig id="f0030"><label>Fig. 6</label><caption><p>Distributions of the outbreak duration and size obtained from the simulations, allowing the variation in the size and initial timing of the occurrence of SSE when <inline-formula><mml:math id="M71" altimg="si0001.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula> (A) and <inline-formula><mml:math id="M72" altimg="si0002.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula> (B). The different distributions of SSE 1 only (black dot), SSE 2 only (green cross), and both (blue plus) are shown. The yellow square represents the outbreak duration and size from the model <xref rid="eq0005" ref-type="disp-formula">(1)</xref> with baseline parameters. (For interpretation of the references to color in this figure caption, the reader is referred to the web version of this paper.)</p></caption><alt-text id="at0030">Fig. 6</alt-text><graphic xlink:href="gr6"></graphic></fig></p><p id="p0150">The mean values of the outbreak duration and size for the case of SSE 1 and SSE 2 are approximately 64 days and 193 total cases at <inline-formula><mml:math id="M73" altimg="si0078.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula>, respectively, which are similar to those obtained from the baseline parameter. If there exists only one superspreader, then the mean outbreak duration and size are 61 days and 159 total cases for SSE 1, and 52 days and 80 total cases for SSE 2, respectively (<xref rid="t0010" ref-type="table">Table 2</xref>).</p><p id="p0155">If the intervention is put in place a week earlier, <inline-formula><mml:math id="M74" altimg="si0079.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula>, then late-occurring SSEs are avoided and most outbreaks end with significant reductions in its duration and size. If there exists only one superspreader, the mean outbreak duration and size are 56 days and 131 total cases for SSE 1, and 46 days and 67 total cases for SSE 2, respectively. If there exist both SSE 1 and SSE 2, the mean outbreak duration and size are 58 days and 158 total size, respectively (<xref rid="t0010" ref-type="table">Table 2</xref>). We found that 74.5% of the simulated outbreaks with both SSE 1 and SSE 2 had a shorter duration and a smaller size than the baseline (a yellow square in <xref rid="f0030" ref-type="fig">Fig. 6</xref>). Notably, about 8% of the simulated outbreaks with both SSE 1 and SSE 2 are of duration <inline-formula><mml:math id="M75" altimg="si0080.gif" overflow="scroll"><mml:mrow><mml:mo><</mml:mo><mml:mn>55</mml:mn></mml:mrow></mml:math></inline-formula> days and of size <inline-formula><mml:math id="M76" altimg="si0081.gif" overflow="scroll"><mml:mrow><mml:mo><</mml:mo><mml:mn>100</mml:mn></mml:mrow></mml:math></inline-formula> total cases.</p><p id="p0160">Scatterplots of the outbreak duration (A) and size (B) are shown when <inline-formula><mml:math id="M77" altimg="si0082.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula> days (<xref rid="f0035" ref-type="fig">Fig. 7</xref>) and <inline-formula><mml:math id="M78" altimg="si0083.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula> days (<xref rid="f0040" ref-type="fig">Fig. 8</xref>). The set of control parameters was obtained from the joint distribution for the initial timing of the SSE and the size of secondary cases by the SSEs. The different distributions of SSE 1 only (black dot) and SSE 2 only (green cross) are shown with those interpolants (gray). The red curve in <xref rid="f0040" ref-type="fig">Fig. 8</xref> highlights the considerable change during days when the sum of the initial timing of the SSE and its duration of exposure is equal to the intervention starting time, i.e., <inline-formula><mml:math id="M79" altimg="si0084.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>τ</mml:mi></mml:mrow></mml:math></inline-formula>. Overall, the outbreak duration and size were positively correlated with the number of secondary cases stemming from the SSEs. Although the outbreak duration was positively correlated with the timing of the SSEs, the outbreak size was negatively correlated with one. When the control measures to contain more infections by the SSE were implemented in the early stage of the spread of MERS (<inline-formula><mml:math id="M80" altimg="si0085.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula>), the outbreak duration and size were remarkably reduced.<fig id="f0035"><label>Fig. 7</label><caption><p>Scatterplots of the outbreak duration (A) and size (B) when <inline-formula><mml:math id="M81" altimg="si0003.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula> days. The data set consists of a set of the initial timing of the SSE and the number of secondary cases caused by the SSE, and the corresponding outbreak duration or size. The different distributions of SSE 1 only (black dot) and SSE 2 only (green cross) are shown with those interpolants (gray). (For interpretation of the references to color in this figure caption, the reader is referred to the web version of this paper.)</p></caption><alt-text id="at0035">Fig. 7</alt-text><graphic xlink:href="gr7"></graphic></fig><fig id="f0040"><label>Fig. 8</label><caption><p>Scatterplots of the outbreak duration (A) and size (B) when <inline-formula><mml:math id="M82" altimg="si0004.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula> days. The data set consists of a set of the initial timing of the SSE and the number of secondary cases caused by the SSE, and the corresponding outbreak duration or size. The different distributions of SSE 1 only (black dot) and SSE 2 only (green cross) are shown with those interpolants (gray). Red curves highlight the considerable change during days when the sum of the initial timing of the SSE and its duration of exposure are equal to the intervention starting time, i.e., <inline-formula><mml:math id="M83" altimg="si0005.gif" overflow="scroll"><mml:mrow><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:mi>δ</mml:mi><mml:msub subscriptshift="65%"><mml:mrow><mml:mi>t</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mi>τ</mml:mi></mml:mrow></mml:math></inline-formula>. (For interpretation of the references to color in this figure caption, the reader is referred to the web version of this paper.)</p></caption><alt-text id="at0040">Fig. 8</alt-text><graphic xlink:href="gr8"></graphic></fig><table-wrap position="float" id="t0010"><label>Table 2</label><caption><p>Expected outbreak duration and size derived from the uncertainty analysis on the SSE.</p></caption><alt-text id="at0050">Table 2</alt-text><table frame="hsides" rules="groups"><thead><tr><th></th><th colspan="3">Scenario 1</th><th colspan="3">Scenario 2</th></tr></thead><tbody><tr><td>Intervention starting time</td><td colspan="3">June 7 (<inline-formula><mml:math id="M84" altimg="si0014.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>18</mml:mn></mml:mrow></mml:math></inline-formula>)<hr></hr></td><td colspan="3">May 31 (<inline-formula><mml:math id="M85" altimg="si0015.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula>)<hr></hr></td></tr><tr><td>Type of SSE</td><td>SSE 1</td><td>SSE 2</td><td>Both</td><td>SSE 1</td><td>SSE 2</td><td>Both</td></tr><tr><td colspan="7"><hr></hr></td></tr><tr><td>Mean outbreak duration (SD)</td><td>61 (3.1)</td><td>52 (2.0)</td><td>64 (2.6)</td><td>56 (4.0)</td><td>46 (2.2)</td><td>58 (3.8)</td></tr><tr><td>Mean outbreak size (SD)</td><td>159 (33.7)</td><td>80 (10.3)</td><td>193 (35.4)</td><td>131 (34.8)</td><td>67 (9.8)</td><td>158 (38.9)</td></tr></tbody></table></table-wrap></p></sec></sec><sec id="s0060"><label>4</label><title>Discussion</title><p id="p0165">We have developed a mathematical model for the 2015 MERS outbreak in the Republic of Korea, incorporating the time-dependent parameters and the pulse of infections to model SSEs. Assuming a nosocomial setting, the pulse of infection with different transmission rates for the SSEs was incorporated in the deterministic model. Laboratory-confirmed data (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>, <xref rid="bib17" ref-type="bibr">Korean Centers for Disease Control, 2016</xref>) were used to estimate the transmission rates for the typical infectious individuals and the superspreaders. To the best of knowledge, this is the first dynamic compartmental model incorporating pulses of infections to model the effect of SSEs.</p><p id="p0170">We estimated <inline-formula><mml:math id="M86" altimg="si0086.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>e</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> regardless of SSEs was below 1, which is consistent with previous works on the recent MERS outbreak (<xref rid="bib5" ref-type="bibr">Cauchemez et al., 2014</xref>, <xref rid="bib7" ref-type="bibr">Chowell et al., 2014</xref>, <xref rid="bib4" ref-type="bibr">Breban et al., 2013</xref>, <xref rid="bib8" ref-type="bibr">Chowell et al., 2015</xref>, <xref rid="bib9" ref-type="bibr">Cowling et al., 2015</xref>, <xref rid="bib20" ref-type="bibr">Majumder et al., 2014</xref>). Moreover, the estimated <inline-formula><mml:math id="M87" altimg="si0087.gif" overflow="scroll"><mml:msub subscriptshift="65%"><mml:mrow><mml:mi mathvariant="script">R</mml:mi></mml:mrow><mml:mrow><mml:mi>e</mml:mi></mml:mrow></mml:msub></mml:math></inline-formula> after the control measures were implemented was substantially decreased. This indicates that the MERS outbreak in the Republic of Korea had a low transmissibility in the absence of the SSEs (<xref rid="bib9" ref-type="bibr">Cowling et al., 2015</xref>). However, the reasons for the emergence of the biggest outbreak outside the Middle East are attributed to the importation of the virus without awareness of the public health (<xref rid="bib23" ref-type="bibr">Nishiura et al., 2015</xref>), missed contacts (<xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref>), substantial exposure to infection (<italic>δt<sub>2</sub></italic>) caused by delayed diagnosis and isolation (<xref rid="bib25" ref-type="bibr">Park et al., 2015</xref>), and abnormally high contact rate of the superspreaders (<inline-formula><mml:math id="M88" altimg="si0088.gif" overflow="scroll"><mml:msubsup subscriptshift="90%" superscriptshift="90%"><mml:mrow><mml:mi>β</mml:mi></mml:mrow><mml:mrow><mml:mi>i</mml:mi></mml:mrow><mml:mrow><mml:mo>*</mml:mo></mml:mrow></mml:msubsup></mml:math></inline-formula>) in the crowded hospital setting (<xref rid="bib16" ref-type="bibr">Korea Centers for Disease Control and Prevention, 2015</xref>). Of 186 confirmed cases with MERS-CoV infection in the Republic of Korea, 153 cases (82.3%) were generated by only 5 cases (2.7%). Conversely, this transmission heterogeneity suggests that identifying them in their suspected stage of MERS-CoV infection could stem the subsequent transmission in over 150 cases in the host population (<xref rid="bib19" ref-type="bibr">Lloyd-Smith et al., 2005</xref>, <xref rid="bib11" ref-type="bibr">Galvani and May 2005</xref>, <xref rid="bib27" ref-type="bibr">Stein, 2011</xref>).</p><p id="p0175">We paid attention to the timing of implementation of control measures associated with the reduction in transmission rate <italic>β</italic> and diagnostic delay <inline-formula><mml:math id="M89" altimg="si0089.gif" overflow="scroll"><mml:mrow><mml:mn>1</mml:mn><mml:mo>/</mml:mo><mml:mi>α</mml:mi></mml:mrow></mml:math></inline-formula>. Quarantine and isolation turned out to be highly effective control measures for reducing the transmission rate. Our results show that the intervention strategies in the early stage of the outbreak (<inline-formula><mml:math id="M90" altimg="si0090.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>≤</mml:mo><mml:mn>7</mml:mn></mml:mrow></mml:math></inline-formula>) could prevent the occurrence of SSEs and substantially reduce the outbreak duration and size. In other words, the failure of rapid detection and proper isolation of suspected patients early in the outbreak has contributed to SSEs, which is in line with the experience of the severe acute respiratory syndrome (SARS) outbreak in 2003 (<xref rid="bib11" ref-type="bibr">Galvani and May 2005</xref>, <xref rid="bib12" ref-type="bibr">Goh et al., 2006</xref>, <xref rid="bib21" ref-type="bibr">McDonald et al., 2004</xref>). Our results derived from the uncertainty analysis of the SSEs suggest that the recent MERS outbreak in the Republic of Korea could have been smaller in size and duration. When <inline-formula><mml:math id="M91" altimg="si0091.gif" overflow="scroll"><mml:mrow><mml:mi>τ</mml:mi><mml:mo>=</mml:mo><mml:mn>11</mml:mn></mml:mrow></mml:math></inline-formula>, it is very likely that outbreaks with both SSE 1 and SSE 2 have a shorter duration and a smaller size (with mean 58 days and 158 cases, respectively) compared to the baseline outcome.</p><p id="p0180">Although it is certainly difficult to preemptively identify superspreaders, the implementation of timely interventions (e.g. fast diagnosis and quarantine of suspected cases) can significantly mitigate the chance of SSEs during an outbreak. Case 14 and Case 16 were not classified as suspected cases but should have been home-quarantined as soon as they were exposed to MERS-CoV by the index case. Furthermore, the diagnostic delay in nosocomial infection made them become superspreaders. After the health authorities implemented the strong control measures such as contact tracing using CCTV surveillance and the GPS of mobile phones, the confirmed cases who were not identified in the contact tracing gradually decreased since June 12 (<xref rid="bib6" ref-type="bibr">Cho and Chu, 2015</xref>). Our results suggest the importance of the early implementation of such interventions in the rapid containment of the SSEs and, consequently, in the remarkable reduction in outbreak duration and size.</p><p id="p0185">To the best of our knowledge, this is the first dynamic compartmental model that explores the nosocomial outbreak of the MERS-CoV in the Republic of Korea including the SSEs. The outbreak pattern in our results shows a good agreement with the time series of confirmed cases. This implies that our model has captured the contributing main factors such as the delayed diagnosis and the announcement to the public of the list of exposed hospitals during the early phase of the outbreak. This result suggests that our modeling framework could be a useful tool for the prediction or prevention of future emerging infectious diseases that have similar characteristics to MERS-CoV infection in the Republic of Korea.</p></sec><sec id="s0065"><title>Competing interests</title><p id="p0190">We declare we have no competing interests.</p></sec></body><back><ref-list id="bibliog0005"><title>References</title><ref id="bib1"><element-citation publication-type="journal" id="sbref1"><person-group person-group-type="author"><name><surname>Assiri</surname><given-names>A.</given-names></name><name><surname>McGeer</surname><given-names>A.</given-names></name><name><surname>Perl</surname><given-names>T.M.</given-names></name><name><surname>Price</surname><given-names>C.S.</given-names></name><name><surname>Al Rabeeah</surname><given-names>A.a.</given-names></name><name><surname>Cummings</surname><given-names>D.a.T.</given-names></name><name><surname>Alabdullatif</surname><given-names>Z.N.</given-names></name><name><surname>Assad</surname><given-names>M.</given-names></name><name><surname>Almulhim</surname><given-names>A.</given-names></name><name><surname>Makhdoom</surname><given-names>H.</given-names></name><name><surname>Madani</surname><given-names>H.</given-names></name><name><surname>Alhakeem</surname><given-names>R.</given-names></name><name><surname>Al-Tawfiq</surname><given-names>J.a.</given-names></name><name><surname>Cotten</surname><given-names>M.</given-names></name><name><surname>Watson</surname><given-names>S.J.</given-names></name><name><surname>Kellam</surname><given-names>P.</given-names></name><name><surname>Zumla</surname><given-names>A.I.</given-names></name><name><surname>Memish</surname><given-names>Z.a.</given-names></name></person-group><article-title>Hospital outbreak of Middle East respiratory syndrome coronavirus</article-title><source>New Engl. 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Med.</source><volume>367</volume><issue>19</issue><year>2012</year><fpage>1814</fpage><lpage>1820</lpage><pub-id pub-id-type="pmid">23075143</pub-id></element-citation></ref><ref id="bib36"><element-citation publication-type="journal" id="sbref27"><person-group person-group-type="author"><name><surname>Zumla</surname><given-names>A.</given-names></name><name><surname>Hui</surname><given-names>D.S.</given-names></name><name><surname>Perlman</surname><given-names>S.</given-names></name></person-group><article-title>Middle East respiratory syndrome</article-title><source>Lancet</source><volume>386</volume><issue>9997</issue><year>2015</year><fpage>995</fpage><lpage>1007</lpage><comment>URL 〈<ext-link ext-link-type="uri" xlink:href="http://linkinghub.elsevier.com/retrieve/pii/S0140673615604548" id="ir0125">http://dx.doi.org/10.1016/S0140-6736(15)60454-8</ext-link>〉</comment><pub-id pub-id-type="pmid">26049252</pub-id></element-citation></ref></ref-list><sec id="s0075" sec-type="supplementary-material"><label>Appendix A</label><title>Supplementary data</title><p id="p0205"><supplementary-material content-type="local-data" id="ec0005"><caption><title>Application 1</title></caption><media xlink:href="mmc1.docx"></media></supplementary-material>.</p></sec><ack id="ack0005"><title>Acknowledgments</title><p><italic>Funding</italic>: The research work of Jung was supported by the <funding-source id="gs1">Korea National Research Foundation (NRF)</funding-source> grant funded by the <funding-source id="gs2">Korea government (MEST)</funding-source> (NRF-2015R1A2A1A15054463). Jung's work is also resulted from the Konkuk University research support program.</p></ack><fn-group><fn id="s0070" fn-type="supplementary-material"><label>Appendix A</label><p id="p0200">Supplementary data associated with this article can be found in the online version at <ext-link ext-link-type="uri" xlink:href="http://dx.doi.org/10.1016/j.jtbi.2016.08.009" id="ir0005">doi:10.1016/j.jtbi.2016.08.009</ext-link>.</p></fn></fn-group></back></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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