Molecular epidemiology and characterization of human coronavirus in Thailand, 2012–2013
Identifieur interne : 000A62 ( Pmc/Checkpoint ); précédent : 000A61; suivant : 000A63Molecular epidemiology and characterization of human coronavirus in Thailand, 2012–2013
Auteurs : Rapeepun Soonnarong [Thaïlande] ; Ilada Thongpan [Thaïlande] ; Sunchai Payungporn [Thaïlande] ; Chanpim Vuthitanachot [Thaïlande] ; Viboonsuk Vuthitanachot [Thaïlande] ; Preeyaporn Vichiwattana [Thaïlande] ; Sompong Vongpunsawad [Thaïlande] ; Yong Poovorawan [Thaïlande]Source :
- SpringerPlus [ 2193-1801 ] ; 2016.
Abstract
Coronavirus causes respiratory infections in humans. To determine the prevalence of human coronavirus (HCoV) infection among patients with influenza-like illness, 5833 clinical samples from nasopharyngeal swabs and aspirates collected between January 2012 and December 2013 were examined.
HCoV was found in 46 (0.79 %) samples. There were 19 (0.32 %) HCoV-HKU1, 19 (0.32 %) HCoV-NL63, 5 (0.09 %) HCoV-229E, and 3 (0.05 %) HCoV-OC43. None of the sample tested positive for MERS-CoV. The majority (54 %) of the HCoV-positive patients were between the ages of 0 and 5 years. HCoV was detected throughout the 2-year period and generally peaked from May to October, which coincided with the rainy season. Phylogenetic trees based on the alignment of the spike (
The data in this study provide an insight into the prevalence of the recent circulating HCoVs in the region.
Url:
DOI: 10.1186/s40064-016-3101-9
PubMed: 27625974
PubMed Central: 4999384
Affiliations:
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type="main">Molecular epidemiology and characterization of human coronavirus in Thailand, 2012–2013</title><author><name sortKey="Soonnarong, Rapeepun" sort="Soonnarong, Rapeepun" uniqKey="Soonnarong R" first="Rapeepun" last="Soonnarong">Rapeepun Soonnarong</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Department of Biochemistry, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author><author><name sortKey="Thongpan, Ilada" sort="Thongpan, Ilada" uniqKey="Thongpan I" first="Ilada" last="Thongpan">Ilada Thongpan</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author><author><name sortKey="Payungporn, Sunchai" sort="Payungporn, Sunchai" uniqKey="Payungporn S" first="Sunchai" last="Payungporn">Sunchai Payungporn</name><affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Department of Biochemistry, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author><author><name sortKey="Vuthitanachot, Chanpim" sort="Vuthitanachot, Chanpim" uniqKey="Vuthitanachot C" first="Chanpim" last="Vuthitanachot">Chanpim Vuthitanachot</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Chum Phae Hospital, Khon Kaen, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Chum Phae Hospital, Khon Kaen</wicri:regionArea><wicri:noRegion>Khon Kaen</wicri:noRegion></affiliation></author><author><name sortKey="Vuthitanachot, Viboonsuk" sort="Vuthitanachot, Viboonsuk" uniqKey="Vuthitanachot V" first="Viboonsuk" last="Vuthitanachot">Viboonsuk Vuthitanachot</name><affiliation wicri:level="1"><nlm:aff id="Aff3">Chum Phae Hospital, Khon Kaen, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Chum Phae Hospital, Khon Kaen</wicri:regionArea><wicri:noRegion>Khon Kaen</wicri:noRegion></affiliation></author><author><name sortKey="Vichiwattana, Preeyaporn" sort="Vichiwattana, Preeyaporn" uniqKey="Vichiwattana P" first="Preeyaporn" last="Vichiwattana">Preeyaporn Vichiwattana</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author><author><name sortKey="Vongpunsawad, Sompong" sort="Vongpunsawad, Sompong" uniqKey="Vongpunsawad S" first="Sompong" last="Vongpunsawad">Sompong Vongpunsawad</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author><author><name sortKey="Poovorawan, Yong" sort="Poovorawan, Yong" uniqKey="Poovorawan Y" first="Yong" last="Poovorawan">Yong Poovorawan</name><affiliation wicri:level="1"><nlm:aff id="Aff2"><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</nlm:aff><country xml:lang="fr">Thaïlande</country><wicri:regionArea>Bangkok</wicri:regionArea></affiliation></author></analytic><series><title level="j">SpringerPlus</title><idno type="eISSN">2193-1801</idno><imprint><date when="2016">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p id="Par1">Coronavirus causes respiratory infections in humans. To determine the prevalence of human coronavirus (HCoV) infection among patients with influenza-like illness, 5833 clinical samples from nasopharyngeal swabs and aspirates collected between January 2012 and December 2013 were examined.</p></sec><sec><title>Results</title><p id="Par2">HCoV was found in 46 (0.79 %) samples. There were 19 (0.32 %) HCoV-HKU1, 19 (0.32 %) HCoV-NL63, 5 (0.09 %) HCoV-229E, and 3 (0.05 %) HCoV-OC43. None of the sample tested positive for MERS-CoV. The majority (54 %) of the HCoV-positive patients were between the ages of 0 and 5 years. HCoV was detected throughout the 2-year period and generally peaked from May to October, which coincided with the rainy season. Phylogenetic trees based on the alignment of the spike (<italic>S</italic>) gene sequences suggest an emergence of a new clade for HCoV-229E.</p></sec><sec><title>Conclusions</title><p id="Par3">The data in this study provide an insight into the prevalence of the recent circulating HCoVs in the region.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Auksornkitti, V" uniqKey="Auksornkitti V">V Auksornkitti</name></author><author><name sortKey="Kamprasert, N" uniqKey="Kamprasert N">N Kamprasert</name></author><author><name sortKey="Thongkomplew, S" uniqKey="Thongkomplew S">S Thongkomplew</name></author><author><name sortKey="Suwannakarn, K" uniqKey="Suwannakarn K">K Suwannakarn</name></author><author><name sortKey="Theamboonlers, A" uniqKey="Theamboonlers A">A Theamboonlers</name></author><author><name sortKey="Samransamruajkij, R" uniqKey="Samransamruajkij R">R Samransamruajkij</name></author><author><name 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Springerplus</journal-id><journal-id journal-id-type="iso-abbrev">Springerplus</journal-id><journal-title-group><journal-title>SpringerPlus</journal-title></journal-title-group><issn pub-type="epub">2193-1801</issn><publisher><publisher-name>Springer International Publishing</publisher-name><publisher-loc>Cham</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">27625974</article-id><article-id pub-id-type="pmc">4999384</article-id><article-id pub-id-type="publisher-id">3101</article-id><article-id pub-id-type="doi">10.1186/s40064-016-3101-9</article-id><article-categories><subj-group subj-group-type="heading"><subject>Research</subject></subj-group></article-categories><title-group><article-title>Molecular epidemiology and characterization of human coronavirus in Thailand, 2012–2013</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Soonnarong</surname><given-names>Rapeepun</given-names></name><address><email>sakura.cu@hotmail.com</email></address><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Thongpan</surname><given-names>Ilada</given-names></name><address><email>ilada.cu09@gmail.com</email></address><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Payungporn</surname><given-names>Sunchai</given-names></name><address><email>sp.medbiochemcu@gmail.com</email></address><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Vuthitanachot</surname><given-names>Chanpim</given-names></name><address><email>viboovut@hotmail.com</email></address><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Vuthitanachot</surname><given-names>Viboonsuk</given-names></name><address><email>viboovut@hotmail.com</email></address><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Vichiwattana</surname><given-names>Preeyaporn</given-names></name><address><email>preeya_teiy@hotmail.com</email></address><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Vongpunsawad</surname><given-names>Sompong</given-names></name><address><email>sompong.vo@chula.ac.th</email></address><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Poovorawan</surname><given-names>Yong</given-names></name><address><phone>+66 2256 4909</phone><email>yong.p@chula.ac.th</email></address><xref ref-type="aff" rid="Aff2">2</xref></contrib><aff id="Aff1"><label>1</label><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Department of Biochemistry, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</aff><aff id="Aff2"><label>2</label><institution-wrap><institution-id institution-id-type="GRID">grid.7922.e</institution-id><institution-id institution-id-type="ISNI">0000000102447875</institution-id><institution>Center of Excellence in Clinical Virology, Department of Pediatrics, Faculty of Medicine,</institution><institution>Chulalongkorn University,</institution></institution-wrap>Bangkok, Thailand</aff><aff id="Aff3"><label>3</label>Chum Phae Hospital, Khon Kaen, Thailand</aff></contrib-group><pub-date pub-type="epub"><day>26</day><month>8</month><year>2016</year></pub-date><pub-date pub-type="pmc-release"><day>26</day><month>8</month><year>2016</year></pub-date><pub-date pub-type="collection"><year>2016</year></pub-date><volume>5</volume><issue>1</issue><elocation-id>1420</elocation-id><history><date date-type="received"><day>12</day><month>5</month><year>2016</year></date><date date-type="accepted"><day>18</day><month>8</month><year>2016</year></date></history><permissions><copyright-statement>© The Author(s) 2016</copyright-statement><license license-type="OpenAccess"><license-p><bold>Open Access</bold>This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.</license-p></license></permissions><abstract id="Abs1"><sec><title>Background</title><p id="Par1">Coronavirus causes respiratory infections in humans. To determine the prevalence of human coronavirus (HCoV) infection among patients with influenza-like illness, 5833 clinical samples from nasopharyngeal swabs and aspirates collected between January 2012 and December 2013 were examined.</p></sec><sec><title>Results</title><p id="Par2">HCoV was found in 46 (0.79 %) samples. There were 19 (0.32 %) HCoV-HKU1, 19 (0.32 %) HCoV-NL63, 5 (0.09 %) HCoV-229E, and 3 (0.05 %) HCoV-OC43. None of the sample tested positive for MERS-CoV. The majority (54 %) of the HCoV-positive patients were between the ages of 0 and 5 years. HCoV was detected throughout the 2-year period and generally peaked from May to October, which coincided with the rainy season. Phylogenetic trees based on the alignment of the spike (<italic>S</italic>) gene sequences suggest an emergence of a new clade for HCoV-229E.</p></sec><sec><title>Conclusions</title><p id="Par3">The data in this study provide an insight into the prevalence of the recent circulating HCoVs in the region.</p></sec></abstract><kwd-group xml:lang="en"><title>Keywords</title><kwd>Human coronavirus (HCoV)</kwd><kwd>Epidemiology</kwd><kwd>Respiratory tract infection (RTI)</kwd><kwd>Thailand</kwd></kwd-group><funding-group><award-group><funding-source><institution>Bureau of General Communicable Disease, Department of Disease Control, Ministry of Public Health</institution></funding-source></award-group></funding-group><funding-group><award-group><funding-source><institution>Research Chair Grant from NSTDA</institution></funding-source></award-group></funding-group><funding-group><award-group><funding-source><institution>Chulalongkorn University Centenary Academic Development Project</institution></funding-source><award-id>CU56-HR01</award-id><principal-award-recipient><name><surname>Poovorawan</surname><given-names>Yong</given-names></name></principal-award-recipient></award-group></funding-group><funding-group><award-group><funding-source><institution>Ratchadaphiseksomphot Endowment Fund of Chulalongkorn University </institution></funding-source><award-id>RES560530093</award-id><principal-award-recipient><name><surname>Poovorawan</surname><given-names>Yong</given-names></name></principal-award-recipient></award-group></funding-group><funding-group><award-group><funding-source><institution>Outstanding Professor of Thailand Research Fund </institution></funding-source><award-id>DPG5480002</award-id><principal-award-recipient><name><surname>Poovorawan</surname><given-names>Yong</given-names></name></principal-award-recipient></award-group></funding-group><funding-group><award-group><funding-source><institution>Center of Excellence in Clinical Virology, Chulalongkorn University </institution></funding-source><award-id>GCE58-014-30-004</award-id><principal-award-recipient><name><surname>Poovorawan</surname><given-names>Yong</given-names></name></principal-award-recipient></award-group></funding-group><funding-group><award-group><funding-source><institution>the 100th anniversary Chulalongkorn University Fund for doctoral scholarship</institution></funding-source></award-group></funding-group><funding-group><award-group><funding-source><institution>MK Restaurant Company Limited </institution></funding-source></award-group></funding-group><funding-group><award-group><funding-source><institution>The Siam Cement Pcl.</institution></funding-source></award-group></funding-group><funding-group><award-group><funding-source><institution-wrap><institution-id institution-id-type="FundRef">http://dx.doi.org/10.13039/501100004704</institution-id><institution>National Research Council of Thailand</institution></institution-wrap></funding-source></award-group></funding-group><custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name><meta-value>© The Author(s) 2016</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>Thaïlande</li></country></list><tree><country name="Thaïlande"><noRegion><name sortKey="Soonnarong, Rapeepun" sort="Soonnarong, Rapeepun" uniqKey="Soonnarong R" first="Rapeepun" last="Soonnarong">Rapeepun Soonnarong</name></noRegion><name sortKey="Payungporn, Sunchai" sort="Payungporn, Sunchai" uniqKey="Payungporn S" first="Sunchai" last="Payungporn">Sunchai Payungporn</name><name sortKey="Poovorawan, Yong" sort="Poovorawan, Yong" uniqKey="Poovorawan Y" first="Yong" last="Poovorawan">Yong Poovorawan</name><name sortKey="Thongpan, Ilada" sort="Thongpan, Ilada" uniqKey="Thongpan I" first="Ilada" last="Thongpan">Ilada Thongpan</name><name sortKey="Vichiwattana, Preeyaporn" sort="Vichiwattana, Preeyaporn" uniqKey="Vichiwattana P" first="Preeyaporn" last="Vichiwattana">Preeyaporn Vichiwattana</name><name sortKey="Vongpunsawad, Sompong" sort="Vongpunsawad, Sompong" uniqKey="Vongpunsawad S" first="Sompong" last="Vongpunsawad">Sompong Vongpunsawad</name><name sortKey="Vuthitanachot, Chanpim" sort="Vuthitanachot, Chanpim" uniqKey="Vuthitanachot C" first="Chanpim" last="Vuthitanachot">Chanpim Vuthitanachot</name><name sortKey="Vuthitanachot, Viboonsuk" sort="Vuthitanachot, Viboonsuk" uniqKey="Vuthitanachot V" first="Viboonsuk" last="Vuthitanachot">Viboonsuk Vuthitanachot</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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