Computational Biology (instrumentation) < Computational Biology (methods) < Computational Biology (statistics & numerical data)

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List of bibliographic references

Number of relevant bibliographic references: 86.
[0-20] [0 - 20][0 - 50][20-40]

Ident.	Authors (with country if any)	Title
000132 (2002)	Keith D. Ball [États-Unis] ; Burak Erman ; Ken A. Dill	The elastic net algorithm and protein structure prediction.
000135 (2002)	W James Kent [États-Unis]	BLAT--the BLAST-like alignment tool.
000210 (2003)	Eran Halperin [États-Unis] ; Shay Halperin ; Tzvika Hartman ; Ron Shamir	Handling long targets and errors in sequencing by hybridization.
000239 (2002)	Jeong-Hyeon Choi [Corée du Sud] ; Hwan-Gue Cho	Analysis of common k-mers for whole genome sequences using SSB-tree.
000258 (2004)	Robert C. Edgar	Local homology recognition and distance measures in linear time using compressed amino acid alphabets.
000290 (2004)	Peter C. Fitzgerald [États-Unis] ; Andrey Shlyakhtenko ; Alain A. Mir ; Charles Vinson	Clustering of DNA sequences in human promoters.
000416 (2006)	Catherine Paradis-Bleau [Canada] ; Mélanie Beaumont ; Lydia Boudreault ; Adrian Lloyd ; François Sanschagrin ; Timothy D H. Bugg ; Roger C. Levesque	Selection of peptide inhibitors against the Pseudomonas aeruginosa MurD cell wall enzyme.
000500 (2006)	Asif M. Khan [Singapour] ; At Heiny [Singapour] ; Kenneth X. Lee [Singapour] ; Kn Srinivasan [Singapour, États-Unis] ; Tin Wee Tan [Singapour] ; J Thomas August [Singapour, États-Unis] ; Vladimir Brusic [Singapour, Australie]	Large-scale analysis of antigenic diversity of T-cell epitopes in dengue virus
000516 (2007)	Michael Höhl ; Mark A. Ragan	Is Multiple-Sequence Alignment Required for Accurate Inference of Phylogeny?
000564 (2007)	Jin Gu [République populaire de Chine] ; Hu Fu [République populaire de Chine] ; Xuegong Zhang [République populaire de Chine] ; Yanda Li [République populaire de Chine]	Identifications of conserved 7-mers in 3'-UTRs and microRNAs in Drosophila
000590 (2008)	Daniel R. Zerbino [Royaume-Uni] ; Ewan Birney	Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
000635 (2008)	Akifumi Yamashita [Japon] ; Naohisa Goto ; Seiji Nishiguchi ; Kazunori Shimada ; Hiromichi Yamanishi ; Teruo Yasunaga	Computational search for over-represented 8-mers within the 5'-regulatory regions of 634 mouse testis-specific genes.
000650 (2008)	Stefan Kurtz [Allemagne] ; Apurva Narechania [États-Unis] ; Joshua C. Stein [États-Unis] ; Doreen Ware [États-Unis]	A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes
000656 (2009)	Minou Bina [États-Unis] ; Phillip Wyss ; Sheryl A. Lazarus ; Syed R. Shah ; Wenhui Ren ; Wojciech Szpankowski ; Gregory E. Crawford ; Sang P. Park ; Xiaohui C. Song	Discovering sequences with potential regulatory characteristics.
000658 (2008)	Trevis M. Alleyne ; Lourdes Pe A-Castillo [Canada] ; Gwenael Badis [Canada] ; Shaheynoor Talukder ; Michael F. Berger [États-Unis] ; Andrew R. Gehrke [États-Unis] ; Anthony A. Philippakis [États-Unis] ; Martha L. Bulyk [États-Unis] ; Quaid D. Morris [Canada] ; Timothy R. Hughes [Canada]	Predicting the binding preference of transcription factors to individual DNA k-mers
000727 (2009)	Desiree Tillo [Canada] ; Timothy R. Hughes [Canada]	G+C content dominates intrinsic nucleosome occupancy
000744 (2010)	Bobbie-Jo M. Webb-Robertson [États-Unis] ; Kyle G. Ratuiste [États-Unis] ; Christopher S. Oehmen [États-Unis]	Physicochemical property distributions for accurate and rapid pairwise protein homology detection
000784 (2010)	Xiaohong Zhao [États-Unis] ; Lance E. Palmer ; Randall Bolanos ; Cristian Mircean ; Dan Fasulo ; Gayle M. Wittenberg	EDAR: an efficient error detection and removal algorithm for next generation sequencing data.
000793 (2010)	Kana Shimizu ; Koji Tsuda [Japon]	SlideSort: all pairs similarity search for short reads
000799 (2011)	Guillaume Marçais [États-Unis] ; Carl Kingsford	A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.
000864 (2011)	Nicolas Philippe [France] ; Mikaël Salson [France] ; Thierry Lecroq [France] ; Martine Léonard [France] ; Thérèse Commes [France] ; Eric Rivals [France]	Querying large read collections in main memory: a versatile data structure

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