Ranked k-spectrum kernel for comparative and evolutionary comparison of exons, introns, and CpG islands.
Identifieur interne : 002332 ( Ncbi/Curation ); précédent : 002331; suivant : 002333Ranked k-spectrum kernel for comparative and evolutionary comparison of exons, introns, and CpG islands.
Auteurs : Sangseon Lee ; Taeheon Lee ; Yung-Kyun Noh ; Sun KimSource :
- IEEE/ACM transactions on computational biology and bioinformatics [ 1557-9964 ] ; 2019.
Abstract
Existing k-mer based string kernel methods have been successfully used for sequence comparison. However, existing kernel methods have limitations for comparative and evolutionary comparisons of genomes due to the sensitiveness to over-represented k-mers and variable sequence lengths.
DOI: 10.1109/TCBB.2019.2938949
PubMed: 31494555
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