CoMeta: Classification of Metagenomes Using k-mers
Identifieur interne : 001098 ( Ncbi/Curation ); précédent : 001097; suivant : 001099CoMeta: Classification of Metagenomes Using k-mers
Auteurs : Jolanta Kawulok ; Sebastian DeorowiczSource :
- PLoS ONE [ 1932-6203 ] ; 2015.
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Abstract
Nowadays, the study of environmental samples has been developing rapidly. Characterization of the environment composition broadens the knowledge about the relationship between species composition and environmental conditions. An important element of extracting the knowledge of the sample composition is to compare the extracted fragments of DNA with sequences derived from known organisms. In the presented paper, we introduce an algorithm called CoMeta (
Url:
DOI: 10.1371/journal.pone.0121453
PubMed: 25884504
PubMed Central: 4401624
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PMC:4401624Le document en format XML
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<term>Databases, Genetic</term>
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<term>Metagenomics (methods)</term>
<term>Sequence Analysis, DNA</term>
<term>User-Computer Interface</term>
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<term>Analyse de séquence d'ADN</term>
<term>Bases de données génétiques</term>
<term>Interface utilisateur</term>
<term>Internet</term>
<term>Métagénomique ()</term>
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<term>Internet</term>
<term>Sequence Analysis, DNA</term>
<term>User-Computer Interface</term>
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<term>Analyse de séquence d'ADN</term>
<term>Bases de données génétiques</term>
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<front><div type="abstract" xml:lang="en"><p>Nowadays, the study of environmental samples has been developing rapidly. Characterization of the environment composition broadens the knowledge about the relationship between species composition and environmental conditions. An important element of extracting the knowledge of the sample composition is to compare the extracted fragments of DNA with sequences derived from known organisms. In the presented paper, we introduce an algorithm called CoMeta (<underline>C</underline>
lassification <underline>o</underline>
f <underline>meta</underline>
genomes), which assigns a query read (a DNA fragment) into one of the groups previously prepared by the user. Typically, this is one of the taxonomic rank (e.g., phylum, genus), however prepared groups may contain sequences having various functions. In CoMeta, we used the exact method for read classification using short subsequences (<italic>k</italic>
-mers) and fast program for indexing large set of <italic>k</italic>
-mers. In contrast to the most popular methods based on BLAST, where the query is compared with each reference sequence, we begin the classification from the top of the taxonomy tree to reduce the number of comparisons. The presented experimental study confirms that CoMeta outperforms other programs used in this context. CoMeta is available at <ext-link ext-link-type="uri" xlink:href="https://github.com/jkawulok/cometa">https://github.com/jkawulok/cometa</ext-link>
under a free GNU GPL 2 license.</p>
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<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Handelsman, J" uniqKey="Handelsman J">J Handelsman</name>
</author>
<author><name sortKey="Rondon, Mr" uniqKey="Rondon M">MR Rondon</name>
</author>
<author><name sortKey="Brady, Sf" uniqKey="Brady S">SF Brady</name>
</author>
<author><name sortKey="Clardy, J" uniqKey="Clardy J">J Clardy</name>
</author>
<author><name sortKey="Goodman, Rm" uniqKey="Goodman R">RM Goodman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pace, Nr" uniqKey="Pace N">NR Pace</name>
</author>
<author><name sortKey="Stahl, Da" uniqKey="Stahl D">DA Stahl</name>
</author>
<author><name sortKey="Olsen, Gj" uniqKey="Olsen G">GJ Olsen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Handelsman, J" uniqKey="Handelsman J">J Handelsman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simon, C" uniqKey="Simon C">C Simon</name>
</author>
<author><name sortKey="Daniel, R" uniqKey="Daniel R">R Daniel</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Rousk, J" uniqKey="Rousk J">J Rousk</name>
</author>
<author><name sortKey="Baath, E" uniqKey="Baath E">E Baath</name>
</author>
<author><name sortKey="Brookes, Pc" uniqKey="Brookes P">PC Brookes</name>
</author>
<author><name sortKey="Lauber, Cl" uniqKey="Lauber C">CL Lauber</name>
</author>
<author><name sortKey="Lozupone, C" uniqKey="Lozupone C">C Lozupone</name>
</author>
<author><name sortKey="Caporaso, Jg" uniqKey="Caporaso J">JG Caporaso</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fierer, N" uniqKey="Fierer N">N Fierer</name>
</author>
<author><name sortKey="Leff, J" uniqKey="Leff J">J Leff</name>
</author>
<author><name sortKey="Adams, B" uniqKey="Adams B">B Adams</name>
</author>
<author><name sortKey="Nielsen, U" uniqKey="Nielsen U">U Nielsen</name>
</author>
<author><name sortKey="Bates, S" uniqKey="Bates S">S Bates</name>
</author>
<author><name sortKey="Lauber, C" uniqKey="Lauber C">C Lauber</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Abbai, N" uniqKey="Abbai N">N Abbai</name>
</author>
<author><name sortKey="Govender, A" uniqKey="Govender A">A Govender</name>
</author>
<author><name sortKey="Shaik, R" uniqKey="Shaik R">R Shaik</name>
</author>
<author><name sortKey="Pillay, B" uniqKey="Pillay B">B Pillay</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kennedy, J" uniqKey="Kennedy J">J Kennedy</name>
</author>
<author><name sortKey="O Eary, Nd" uniqKey="O Eary N">ND O’Leary</name>
</author>
<author><name sortKey="Kiran, Gs" uniqKey="Kiran G">GS Kiran</name>
</author>
<author><name sortKey="Morrissey, Jp" uniqKey="Morrissey J">JP Morrissey</name>
</author>
<author><name sortKey="O Ara, F" uniqKey="O Ara F">F O’Gara</name>
</author>
<author><name sortKey="Selvin, J" uniqKey="Selvin J">J Selvin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gilbert, J" uniqKey="Gilbert J">J Gilbert</name>
</author>
<author><name sortKey="Field, D" uniqKey="Field D">D Field</name>
</author>
<author><name sortKey="Huang, Y" uniqKey="Huang Y">Y Huang</name>
</author>
<author><name sortKey="Edwards, R" uniqKey="Edwards R">R Edwards</name>
</author>
<author><name sortKey="Li, W" uniqKey="Li W">W Li</name>
</author>
<author><name sortKey="Gilna, P" uniqKey="Gilna P">P Gilna</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Yergeau, E" uniqKey="Yergeau E">E Yergeau</name>
</author>
<author><name sortKey="Lawrence, Jr" uniqKey="Lawrence J">JR Lawrence</name>
</author>
<author><name sortKey="Waiser, Mj" uniqKey="Waiser M">MJ Waiser</name>
</author>
<author><name sortKey="Korber, Dr" uniqKey="Korber D">DR Korber</name>
</author>
<author><name sortKey="Greer, Cw" uniqKey="Greer C">CW Greer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rhee, Jk" uniqKey="Rhee J">JK Rhee</name>
</author>
<author><name sortKey="Ahn, Dg" uniqKey="Ahn D">DG Ahn</name>
</author>
<author><name sortKey="Kim, Yg" uniqKey="Kim Y">YG Kim</name>
</author>
<author><name sortKey="Oh, Jw" uniqKey="Oh J">JW Oh</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simon, C" uniqKey="Simon C">C Simon</name>
</author>
<author><name sortKey="Wiezer, A" uniqKey="Wiezer A">A Wiezer</name>
</author>
<author><name sortKey="Strittmatter, Aw" uniqKey="Strittmatter A">AW Strittmatter</name>
</author>
<author><name sortKey="Daniel, R" uniqKey="Daniel R">R Daniel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Heath, C" uniqKey="Heath C">C Heath</name>
</author>
<author><name sortKey="Hu, Xpp" uniqKey="Hu X">XPP Hu</name>
</author>
<author><name sortKey="Cary, Sc" uniqKey="Cary S">SC Cary</name>
</author>
<author><name sortKey="Cowan, D" uniqKey="Cowan D">D Cowan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nguyen, Nh" uniqKey="Nguyen N">NH Nguyen</name>
</author>
<author><name sortKey="Maruset, L" uniqKey="Maruset L">L Maruset</name>
</author>
<author><name sortKey="Uengwetwanit, T" uniqKey="Uengwetwanit T">T Uengwetwanit</name>
</author>
<author><name sortKey="Mhuantong, W" uniqKey="Mhuantong W">W Mhuantong</name>
</author>
<author><name sortKey="Harnpicharnchai, P" uniqKey="Harnpicharnchai P">P Harnpicharnchai</name>
</author>
<author><name sortKey="Champreda, V" uniqKey="Champreda V">V Champreda</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hess, M" uniqKey="Hess M">M Hess</name>
</author>
<author><name sortKey="Sczyrba, A" uniqKey="Sczyrba A">A Sczyrba</name>
</author>
<author><name sortKey="Egan, R" uniqKey="Egan R">R Egan</name>
</author>
<author><name sortKey="Kim, T" uniqKey="Kim T">T Kim</name>
</author>
<author><name sortKey="Chokhawala, H" uniqKey="Chokhawala H">H Chokhawala</name>
</author>
<author><name sortKey="Schroth, G" uniqKey="Schroth G">G Schroth</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Qin, J" uniqKey="Qin J">J Qin</name>
</author>
<author><name sortKey="Li, R" uniqKey="Li R">R Li</name>
</author>
<author><name sortKey="Raes, J" uniqKey="Raes J">J Raes</name>
</author>
<author><name sortKey="Arumugam, M" uniqKey="Arumugam M">M Arumugam</name>
</author>
<author><name sortKey="Burgdorf, K" uniqKey="Burgdorf K">K Burgdorf</name>
</author>
<author><name sortKey="Manichanh, C" uniqKey="Manichanh C">C Manichanh</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kuczynski, J" uniqKey="Kuczynski J">J Kuczynski</name>
</author>
<author><name sortKey="Lauber, Cl" uniqKey="Lauber C">CL Lauber</name>
</author>
<author><name sortKey="Walters, Wa" uniqKey="Walters W">WA Walters</name>
</author>
<author><name sortKey="Parfrey, Lw" uniqKey="Parfrey L">LW Parfrey</name>
</author>
<author><name sortKey="Clemente, Jc" uniqKey="Clemente J">JC Clemente</name>
</author>
<author><name sortKey="Gevers, D" uniqKey="Gevers D">D Gevers</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bruls, T" uniqKey="Bruls T">T Bruls</name>
</author>
<author><name sortKey="Weissenbach, J" uniqKey="Weissenbach J">J Weissenbach</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Peterson, J" uniqKey="Peterson J">J Peterson</name>
</author>
<author><name sortKey="Garges, S" uniqKey="Garges S">S Garges</name>
</author>
<author><name sortKey="Giovanni, M" uniqKey="Giovanni M">M Giovanni</name>
</author>
<author><name sortKey="Mcinnes, P" uniqKey="Mcinnes P">P McInnes</name>
</author>
<author><name sortKey="Wang, L" uniqKey="Wang L">L Wang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Thomas, T" uniqKey="Thomas T">T Thomas</name>
</author>
<author><name sortKey="Gilbert, J" uniqKey="Gilbert J">J Gilbert</name>
</author>
<author><name sortKey="Meyer, F" uniqKey="Meyer F">F Meyer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kunin, V" uniqKey="Kunin V">V Kunin</name>
</author>
<author><name sortKey="Copeland, A" uniqKey="Copeland A">A Copeland</name>
</author>
<author><name sortKey="Lapidus, A" uniqKey="Lapidus A">A Lapidus</name>
</author>
<author><name sortKey="Mavromatis, K" uniqKey="Mavromatis K">K Mavromatis</name>
</author>
<author><name sortKey="Hugenholtz, P" uniqKey="Hugenholtz P">P Hugenholtz</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sanger, F" uniqKey="Sanger F">F Sanger</name>
</author>
<author><name sortKey="Nicklen, S" uniqKey="Nicklen S">S Nicklen</name>
</author>
<author><name sortKey="Coulson, Ar" uniqKey="Coulson A">AR Coulson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Metzker, Ml" uniqKey="Metzker M">ML Metzker</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Nalbantoglu, U" uniqKey="Nalbantoglu U">U Nalbantoglu</name>
</author>
<author><name sortKey="Cakar, A" uniqKey="Cakar A">A Cakar</name>
</author>
<author><name sortKey="Dogan, H" uniqKey="Dogan H">H Dogan</name>
</author>
<author><name sortKey="Abaci, N" uniqKey="Abaci N">N Abaci</name>
</author>
<author><name sortKey="Ustek, D" uniqKey="Ustek D">D Ustek</name>
</author>
<author><name sortKey="Sayood, K" uniqKey="Sayood K">K Sayood</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, Z" uniqKey="Wang Z">Z Wang</name>
</author>
<author><name sortKey="Yang, J" uniqKey="Yang J">J Yang</name>
</author>
<author><name sortKey="Zhou, J" uniqKey="Zhou J">J Zhou</name>
</author>
<author><name sortKey="Zhang, C" uniqKey="Zhang C">C Zhang</name>
</author>
<author><name sortKey="Su, X" uniqKey="Su X">X Su</name>
</author>
<author><name sortKey="Li, T" uniqKey="Li T">T Li</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shafquat, A" uniqKey="Shafquat A">A Shafquat</name>
</author>
<author><name sortKey="Joice, R" uniqKey="Joice R">R Joice</name>
</author>
<author><name sortKey="Simmons, Sl" uniqKey="Simmons S">SL Simmons</name>
</author>
<author><name sortKey="Huttenhower, C" uniqKey="Huttenhower C">C Huttenhower</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hauser, Pm" uniqKey="Hauser P">PM Hauser</name>
</author>
<author><name sortKey="Bernard, T" uniqKey="Bernard T">T Bernard</name>
</author>
<author><name sortKey="Greub, G" uniqKey="Greub G">G Greub</name>
</author>
<author><name sortKey="Jaton, K" uniqKey="Jaton K">K Jaton</name>
</author>
<author><name sortKey="Pagni, M" uniqKey="Pagni M">M Pagni</name>
</author>
<author><name sortKey="Hafen, Gm" uniqKey="Hafen G">GM Hafen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Benson, Da" uniqKey="Benson D">DA Benson</name>
</author>
<author><name sortKey="Cavanaugh, M" uniqKey="Cavanaugh M">M Cavanaugh</name>
</author>
<author><name sortKey="Clark, K" uniqKey="Clark K">K Clark</name>
</author>
<author><name sortKey="Karsch Mizrachi, I" uniqKey="Karsch Mizrachi I">I Karsch-Mizrachi</name>
</author>
<author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name>
</author>
<author><name sortKey="Ostell, J" uniqKey="Ostell J">J Ostell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fierer, N" uniqKey="Fierer N">N Fierer</name>
</author>
<author><name sortKey="Breitbart, M" uniqKey="Breitbart M">M Breitbart</name>
</author>
<author><name sortKey="Nulton, J" uniqKey="Nulton J">J Nulton</name>
</author>
<author><name sortKey="Salamon, P" uniqKey="Salamon P">P Salamon</name>
</author>
<author><name sortKey="Lozupone, C" uniqKey="Lozupone C">C Lozupone</name>
</author>
<author><name sortKey="Jones, R" uniqKey="Jones R">R Jones</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Simister, R" uniqKey="Simister R">R Simister</name>
</author>
<author><name sortKey="Taylor, Mw" uniqKey="Taylor M">MW Taylor</name>
</author>
<author><name sortKey="Tsai, P" uniqKey="Tsai P">P Tsai</name>
</author>
<author><name sortKey="Fan, L" uniqKey="Fan L">L Fan</name>
</author>
<author><name sortKey="Bruxner, Tj" uniqKey="Bruxner T">TJ Bruxner</name>
</author>
<author><name sortKey="Crowe, Ml" uniqKey="Crowe M">ML Crowe</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Krogius Kurikka, L" uniqKey="Krogius Kurikka L">L Krogius-Kurikka</name>
</author>
<author><name sortKey="Kassinen, A" uniqKey="Kassinen A">A Kassinen</name>
</author>
<author><name sortKey="Paulin, L" uniqKey="Paulin L">L Paulin</name>
</author>
<author><name sortKey="Corander, J" uniqKey="Corander J">J Corander</name>
</author>
<author><name sortKey="Makivuokko, H" uniqKey="Makivuokko H">H Makivuokko</name>
</author>
<author><name sortKey="Tuimala, J" uniqKey="Tuimala J">J Tuimala</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, J" uniqKey="Wang J">J Wang</name>
</author>
<author><name sortKey="Mclenachan, Pa" uniqKey="Mclenachan P">PA McLenachan</name>
</author>
<author><name sortKey="Biggs, Pj" uniqKey="Biggs P">PJ Biggs</name>
</author>
<author><name sortKey="Winder, Lh" uniqKey="Winder L">LH Winder</name>
</author>
<author><name sortKey="Schoenfeld, Bik" uniqKey="Schoenfeld B">BIK Schoenfeld</name>
</author>
<author><name sortKey="Narayan, Vv" uniqKey="Narayan V">VV Narayan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Brady, A" uniqKey="Brady A">A Brady</name>
</author>
<author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Diaz, Nn" uniqKey="Diaz N">NN Diaz</name>
</author>
<author><name sortKey="Krause, L" uniqKey="Krause L">L Krause</name>
</author>
<author><name sortKey="Goesmann, A" uniqKey="Goesmann A">A Goesmann</name>
</author>
<author><name sortKey="Niehaus, K" uniqKey="Niehaus K">K Niehaus</name>
</author>
<author><name sortKey="Nattkemper, Tw" uniqKey="Nattkemper T">TW Nattkemper</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rosen, Gl" uniqKey="Rosen G">GL Rosen</name>
</author>
<author><name sortKey="Reichenberger, Er" uniqKey="Reichenberger E">ER Reichenberger</name>
</author>
<author><name sortKey="Rosenfeld, Am" uniqKey="Rosenfeld A">AM Rosenfeld</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Patil, Kr" uniqKey="Patil K">KR Patil</name>
</author>
<author><name sortKey="Haider, P" uniqKey="Haider P">P Haider</name>
</author>
<author><name sortKey="Pope, Pb" uniqKey="Pope P">PB Pope</name>
</author>
<author><name sortKey="Turnbaugh, Pj" uniqKey="Turnbaugh P">PJ Turnbaugh</name>
</author>
<author><name sortKey="Morrison, M" uniqKey="Morrison M">M Morrison</name>
</author>
<author><name sortKey="Scheffer, T" uniqKey="Scheffer T">T Scheffer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cui, H" uniqKey="Cui H">H Cui</name>
</author>
<author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kawulok, M" uniqKey="Kawulok M">M Kawulok</name>
</author>
<author><name sortKey="Nalepa, J" uniqKey="Nalepa J">J Nalepa</name>
</author>
<author><name sortKey="Gimel Arb, G" uniqKey="Gimel Arb G">G Gimel’farb</name>
</author>
<author><name sortKey="Hancock, E" uniqKey="Hancock E">E Hancock</name>
</author>
<author><name sortKey="Imiya, A" uniqKey="Imiya A">A Imiya</name>
</author>
<author><name sortKey="Kuijper, A" uniqKey="Kuijper A">A Kuijper</name>
</author>
<author><name sortKey="Kudo, M" uniqKey="Kudo M">M Kudo</name>
</author>
<author><name sortKey="Omachi, S" uniqKey="Omachi S">S Omachi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cyran, Ka" uniqKey="Cyran K">KA Cyran</name>
</author>
<author><name sortKey="Kawulok, J" uniqKey="Kawulok J">J Kawulok</name>
</author>
<author><name sortKey="Kawulok, M" uniqKey="Kawulok M">M Kawulok</name>
</author>
<author><name sortKey="Stawarz, M" uniqKey="Stawarz M">M Stawarz</name>
</author>
<author><name sortKey="Michalak, M" uniqKey="Michalak M">M Michalak</name>
</author>
<author><name sortKey="Pietrowska, M" uniqKey="Pietrowska M">M Pietrowska</name>
</author>
<author><name sortKey="Ramanna, S" uniqKey="Ramanna S">S Ramanna</name>
</author>
<author><name sortKey="Jain, Lc" uniqKey="Jain L">LC Jain</name>
</author>
<author><name sortKey="Howlett, Rj" uniqKey="Howlett R">RJ Howlett</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, D" uniqKey="Wang D">D Wang</name>
</author>
<author><name sortKey="Shi, L" uniqKey="Shi L">L Shi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Huson, Dh" uniqKey="Huson D">DH Huson</name>
</author>
<author><name sortKey="Auch, Af" uniqKey="Auch A">AF Auch</name>
</author>
<author><name sortKey="Qi, J" uniqKey="Qi J">J Qi</name>
</author>
<author><name sortKey="Schuster, Sc" uniqKey="Schuster S">SC Schuster</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gori, F" uniqKey="Gori F">F Gori</name>
</author>
<author><name sortKey="Folino, G" uniqKey="Folino G">G Folino</name>
</author>
<author><name sortKey="Jetten, Msm" uniqKey="Jetten M">MSM Jetten</name>
</author>
<author><name sortKey="Marchiori, E" uniqKey="Marchiori E">E Marchiori</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Monzoorul Haque, M" uniqKey="Monzoorul Haque M">M Monzoorul Haque</name>
</author>
<author><name sortKey="Ghosh, Ts" uniqKey="Ghosh T">TS Ghosh</name>
</author>
<author><name sortKey="Komanduri, D" uniqKey="Komanduri D">D Komanduri</name>
</author>
<author><name sortKey="Mande, Ss" uniqKey="Mande S">SS Mande</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gerlach, W" uniqKey="Gerlach W">W Gerlach</name>
</author>
<author><name sortKey="Stoye, J" uniqKey="Stoye J">J Stoye</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Meyer, F" uniqKey="Meyer F">F Meyer</name>
</author>
<author><name sortKey="Paarmann, D" uniqKey="Paarmann D">D Paarmann</name>
</author>
<author><name sortKey="D Ouza, M" uniqKey="D Ouza M">M D’Souza</name>
</author>
<author><name sortKey="Olson, R" uniqKey="Olson R">R Olson</name>
</author>
<author><name sortKey="Glass, E" uniqKey="Glass E">E Glass</name>
</author>
<author><name sortKey="Kubal, M" uniqKey="Kubal M">M Kubal</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Schreiber, F" uniqKey="Schreiber F">F Schreiber</name>
</author>
<author><name sortKey="Gumrich, P" uniqKey="Gumrich P">P Gumrich</name>
</author>
<author><name sortKey="Daniel, R" uniqKey="Daniel R">R Daniel</name>
</author>
<author><name sortKey="Meinicke, P" uniqKey="Meinicke P">P Meinicke</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stranneheim, H" uniqKey="Stranneheim H">H Stranneheim</name>
</author>
<author><name sortKey="Kaller, M" uniqKey="Kaller M">M Kaller</name>
</author>
<author><name sortKey="Allander, T" uniqKey="Allander T">T Allander</name>
</author>
<author><name sortKey="Andersson, B" uniqKey="Andersson B">B Andersson</name>
</author>
<author><name sortKey="Arvestad, L" uniqKey="Arvestad L">L Arvestad</name>
</author>
<author><name sortKey="Lundeberg, J" uniqKey="Lundeberg J">J Lundeberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ames, S" uniqKey="Ames S">S Ames</name>
</author>
<author><name sortKey="Hysom, Da" uniqKey="Hysom D">DA Hysom</name>
</author>
<author><name sortKey="Gardner, Sn" uniqKey="Gardner S">SN Gardner</name>
</author>
<author><name sortKey="Lloyd, Gs" uniqKey="Lloyd G">GS Lloyd</name>
</author>
<author><name sortKey="Gokhale, Mb" uniqKey="Gokhale M">MB Gokhale</name>
</author>
<author><name sortKey="Allen, Je" uniqKey="Allen J">JE Allen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wood, De" uniqKey="Wood D">DE Wood</name>
</author>
<author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Roberts, M" uniqKey="Roberts M">M Roberts</name>
</author>
<author><name sortKey="Hayes, W" uniqKey="Hayes W">W Hayes</name>
</author>
<author><name sortKey="Hunt, Br" uniqKey="Hunt B">BR Hunt</name>
</author>
<author><name sortKey="Mount, Sm" uniqKey="Mount S">SM Mount</name>
</author>
<author><name sortKey="Yorke, Ja" uniqKey="Yorke J">JA Yorke</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Deorowicz, S" uniqKey="Deorowicz S">S Deorowicz</name>
</author>
<author><name sortKey="Kokot, M" uniqKey="Kokot M">M Kokot</name>
</author>
<author><name sortKey="Grabowski, S" uniqKey="Grabowski S">S Grabowski</name>
</author>
<author><name sortKey="Debudaj Grabysz, A" uniqKey="Debudaj Grabysz A">A Debudaj-Grabysz</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Movahedi, Ns" uniqKey="Movahedi N">NS Movahedi</name>
</author>
<author><name sortKey="Forouzmand, E" uniqKey="Forouzmand E">E Forouzmand</name>
</author>
<author><name sortKey="Chitsaz, H" uniqKey="Chitsaz H">H Chitsaz</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Deorowicz, S" uniqKey="Deorowicz S">S Deorowicz</name>
</author>
<author><name sortKey="Debudaj Grabysz, A" uniqKey="Debudaj Grabysz A">A Debudaj-Grabysz</name>
</author>
<author><name sortKey="Grabowski, S" uniqKey="Grabowski S">S Grabowski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bazinet, Al" uniqKey="Bazinet A">AL Bazinet</name>
</author>
<author><name sortKey="Cummings, Mp" uniqKey="Cummings M">MP Cummings</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kawulok, J" uniqKey="Kawulok J">J Kawulok</name>
</author>
<author><name sortKey="Deorowicz, S" uniqKey="Deorowicz S">S Deorowicz</name>
</author>
<author><name sortKey="Kozielski, S" uniqKey="Kozielski S">S Kozielski</name>
</author>
<author><name sortKey="Mrozek, D" uniqKey="Mrozek D">D Mrozek</name>
</author>
<author><name sortKey="Kasprowski, P" uniqKey="Kasprowski P">P Kasprowski</name>
</author>
<author><name sortKey="Maysiak Mrozek, B" uniqKey="Maysiak Mrozek B">B Maysiak-Mrozek</name>
</author>
<author><name sortKey="Kostrzewa, D" uniqKey="Kostrzewa D">D Kostrzewa</name>
</author>
</analytic>
</biblStruct>
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</TEI>
</record>
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