Substrate occupancy at the onset of oligomeric transitions of DegP.
Identifieur interne : 000C42 ( Ncbi/Curation ); précédent : 000C41; suivant : 000C43Substrate occupancy at the onset of oligomeric transitions of DegP.
Auteurs : Natalie J. Thompson [Pays-Bas] ; Melisa Merdanovic [Allemagne] ; Michael Ehrmann [Royaume-Uni] ; Esther Van Duijn [Pays-Bas] ; Albert J R. Heck [Pays-Bas]Source :
- Structure (London, England : 1993) [ 1878-4186 ] ; 2014.
Descripteurs français
- KwdFr :
- Données de séquences moléculaires, Escherichia coli (enzymologie), Liaison aux protéines, Ligands, Peptides (), Pliage des protéines, Protéines du choc thermique (), Protéines périplasmiques (), Serine endopeptidases (), Spectrométrie de masse, Spécificité du substrat, Structure quaternaire des protéines, Séquence d'acides aminés.
- MESH :
- enzymologie : Escherichia coli.
- Données de séquences moléculaires, Liaison aux protéines, Ligands, Peptides, Pliage des protéines, Protéines du choc thermique, Protéines périplasmiques, Serine endopeptidases, Spectrométrie de masse, Spécificité du substrat, Structure quaternaire des protéines, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence, Escherichia coli (enzymology), Heat-Shock Proteins (chemistry), Ligands, Mass Spectrometry, Molecular Sequence Data, Peptides (chemistry), Periplasmic Proteins (chemistry), Protein Binding, Protein Folding, Protein Structure, Quaternary, Serine Endopeptidases (chemistry), Substrate Specificity.
- MESH :
- chemical , chemistry : Heat-Shock Proteins, Peptides, Periplasmic Proteins, Serine Endopeptidases.
- enzymology : Escherichia coli.
- Amino Acid Sequence, Ligands, Mass Spectrometry, Molecular Sequence Data, Protein Binding, Protein Folding, Protein Structure, Quaternary, Substrate Specificity.
Abstract
The protease-chaperone DegP undergoes secondary through quaternary structural changes, regulating function and preventing indiscriminate proteolysis. Several structures of DegP oligomers have been observed, including the resting state 6-mer and the 12-mer and 24-mer active states. However, the precise events of the transition between the resting and active states still need to be elucidated. We used native mass spectrometry to demonstrate that binding of multiple substrate-mimicking peptide ligands to the DegP resting state occurs prior to the transition to an active conformation. This transition occurred at a 6-mer occupancy of 40% for each peptide ligand. We observed ligand-specific 9-mer formation with a maximum load of 9 peptides, whereas other substrates led to 12-mers accommodating 24 peptides. Based on these data, we present a model for the initial steps of substrate-induced transitions from the resting to active states of DegP.
DOI: 10.1016/j.str.2013.11.010
PubMed: 24373769
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<term>Mass Spectrometry</term>
<term>Molecular Sequence Data</term>
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<term>Ligands</term>
<term>Mass Spectrometry</term>
<term>Molecular Sequence Data</term>
<term>Protein Binding</term>
<term>Protein Folding</term>
<term>Protein Structure, Quaternary</term>
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<term>Liaison aux protéines</term>
<term>Ligands</term>
<term>Peptides</term>
<term>Pliage des protéines</term>
<term>Protéines du choc thermique</term>
<term>Protéines périplasmiques</term>
<term>Serine endopeptidases</term>
<term>Spectrométrie de masse</term>
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<front><div type="abstract" xml:lang="en">The protease-chaperone DegP undergoes secondary through quaternary structural changes, regulating function and preventing indiscriminate proteolysis. Several structures of DegP oligomers have been observed, including the resting state 6-mer and the 12-mer and 24-mer active states. However, the precise events of the transition between the resting and active states still need to be elucidated. We used native mass spectrometry to demonstrate that binding of multiple substrate-mimicking peptide ligands to the DegP resting state occurs prior to the transition to an active conformation. This transition occurred at a 6-mer occupancy of 40% for each peptide ligand. We observed ligand-specific 9-mer formation with a maximum load of 9 peptides, whereas other substrates led to 12-mers accommodating 24 peptides. Based on these data, we present a model for the initial steps of substrate-induced transitions from the resting to active states of DegP. </div>
</front>
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