The persistent prevalence and evolution of cross-family recombinant coronavirus GCCDC1 among a bat population: a two-year follow-up
Identifieur interne : 001D01 ( Ncbi/Checkpoint ); précédent : 001D00; suivant : 001D02The persistent prevalence and evolution of cross-family recombinant coronavirus GCCDC1 among a bat population: a two-year follow-up
Auteurs : Joseph O. Obameso [République populaire de Chine] ; Hong Li [République populaire de Chine] ; Hao Jia [République populaire de Chine] ; Min Han [République populaire de Chine] ; Shiyan Zhu [République populaire de Chine] ; Canping Huang [République populaire de Chine] ; Yuhui Zhao [République populaire de Chine] ; Min Zhao [République populaire de Chine] ; Yu Bai [République populaire de Chine] ; Fei Yuan [République populaire de Chine] ; Honglan Zhao [République populaire de Chine] ; Xia Peng [République populaire de Chine] ; Wen Xu [République populaire de Chine] ; Wenjie Tan [République populaire de Chine] ; Yingze Zhao [République populaire de Chine] ; Kwok-Yung Yuen [République populaire de Chine] ; William J. Liu [République populaire de Chine] ; Lin Lu [République populaire de Chine] ; George F. Gao [République populaire de Chine]Source :
- Science China. Life Sciences [ 1674-7305 ] ; 2017.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence d'ADN, Animaux, Chine (épidémiologie), Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Gènes viraux (génétique), Génome viral (génétique), Infections à coronavirus (médecine vétérinaire), Infections à coronavirus (virologie), Infections à coronavirus (épidémiologie), Phylogénie, Prévalence, Recombinaison génétique, Études de suivi, Évolution moléculaire.
- MESH :
- génétique : ARN viral, Coronavirus, Gènes viraux, Génome viral.
- isolement et purification : Coronavirus.
- médecine vétérinaire : Infections à coronavirus.
- virologie : Chiroptera, Infections à coronavirus.
- épidémiologie : Chine, Infections à coronavirus.
- Analyse de séquence d'ADN, Animaux, Coronavirus, Phylogénie, Prévalence, Recombinaison génétique, Études de suivi, Évolution moléculaire.
English descriptors
- KwdEn :
- Animals, China (epidemiology), Chiroptera (virology), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (epidemiology), Coronavirus Infections (veterinary), Coronavirus Infections (virology), Evolution, Molecular, Follow-Up Studies, Genes, Viral (genetics), Genome, Viral (genetics), Phylogeny, Prevalence, RNA, Viral (genetics), Recombination, Genetic, Sequence Analysis, DNA.
- MESH :
- chemical , genetics : RNA, Viral.
- classification : Coronavirus.
- epidemiology : China, Coronavirus Infections.
- genetics : Coronavirus, Genes, Viral, Genome, Viral.
- isolation & purification : Coronavirus.
- veterinary : Coronavirus Infections.
- virology : Chiroptera, Coronavirus Infections.
- Animals, Evolution, Molecular, Follow-Up Studies, Phylogeny, Prevalence, Recombination, Genetic, Sequence Analysis, DNA.
Abstract
Bats are connected with the increasing numbers of emerging and re-emerging viruses that may break the species barrier and spread into the human population. Coronaviruses are one of the most common viruses discovered in bats, which were considered as the natural source of recent human-susceptible coronaviruses, i.e. SARS-COV and MERS-CoV. Our previous study reported the discovery of a bat-derived putative cross-family recombinant coronavirus with a reovirus gene
Url:
DOI: 10.1007/s11427-017-9263-6
PubMed: 29299855
PubMed Central: 7088801
Affiliations:
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PMC:7088801Le document en format XML
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<institution>University of Chinese Academy of Sciences,</institution>
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Beijing, 100049 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Li, Hong" sort="Li, Hong" uniqKey="Li H" first="Hong" last="Li">Hong Li</name>
<affiliation wicri:level="1"><nlm:aff id="Aff2">Yunnan Provincial Center for Disease Control and Prevention, Kunming, 650022 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming</wicri:regionArea>
<wicri:noRegion>Kunming</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Jia, Hao" sort="Jia, Hao" uniqKey="Jia H" first="Hao" last="Jia">Hao Jia</name>
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<institution-id institution-id-type="GRID">grid.268099.c</institution-id>
<institution>College of Laboratory Medicine and Life Sciences,</institution>
<institution>Wenzhou Medical University,</institution>
</institution-wrap>
Wenzhou, 325035 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wenzhou</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of People’s Republic of China, National Institute for Viral Disease Control and Prevention,</institution>
<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Han, Min" sort="Han, Min" uniqKey="Han M" first="Min" last="Han">Min Han</name>
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<institution>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100101 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Zhu, Shiyan" sort="Zhu, Shiyan" uniqKey="Zhu S" first="Shiyan" last="Zhu">Shiyan Zhu</name>
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<institution-id institution-id-type="GRID">grid.268099.c</institution-id>
<institution>College of Laboratory Medicine and Life Sciences,</institution>
<institution>Wenzhou Medical University,</institution>
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Wenzhou, 325035 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wenzhou</wicri:regionArea>
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<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Huang, Canping" sort="Huang, Canping" uniqKey="Huang C" first="Canping" last="Huang">Canping Huang</name>
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<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
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<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Zhao, Yuhui" sort="Zhao, Yuhui" uniqKey="Zhao Y" first="Yuhui" last="Zhao">Yuhui Zhao</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000000119573309</institution-id>
<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
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<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100101 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Zhao, Min" sort="Zhao, Min" uniqKey="Zhao M" first="Min" last="Zhao">Min Zhao</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000000119573309</institution-id>
<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100101 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1797 8419</institution-id>
<institution-id institution-id-type="GRID">grid.410726.6</institution-id>
<institution>University of Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100049 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Bai, Yu" sort="Bai, Yu" uniqKey="Bai Y" first="Yu" last="Bai">Yu Bai</name>
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<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100101 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1797 8419</institution-id>
<institution-id institution-id-type="GRID">grid.410726.6</institution-id>
<institution>University of Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100049 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Yuan, Fei" sort="Yuan, Fei" uniqKey="Yuan F" first="Fei" last="Yuan">Fei Yuan</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000000119573309</institution-id>
<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100101 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Zhao, Honglan" sort="Zhao, Honglan" uniqKey="Zhao H" first="Honglan" last="Zhao">Honglan Zhao</name>
<affiliation wicri:level="1"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of People’s Republic of China, National Institute for Viral Disease Control and Prevention,</institution>
<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Peng, Xia" sort="Peng, Xia" uniqKey="Peng X" first="Xia" last="Peng">Xia Peng</name>
<affiliation wicri:level="1"><nlm:aff id="Aff2">Yunnan Provincial Center for Disease Control and Prevention, Kunming, 650022 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming</wicri:regionArea>
<wicri:noRegion>Kunming</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Xu, Wen" sort="Xu, Wen" uniqKey="Xu W" first="Wen" last="Xu">Wen Xu</name>
<affiliation wicri:level="1"><nlm:aff id="Aff2">Yunnan Provincial Center for Disease Control and Prevention, Kunming, 650022 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming</wicri:regionArea>
<wicri:noRegion>Kunming</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Tan, Wenjie" sort="Tan, Wenjie" uniqKey="Tan W" first="Wenjie" last="Tan">Wenjie Tan</name>
<affiliation wicri:level="1"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of People’s Republic of China, National Institute for Viral Disease Control and Prevention,</institution>
<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Zhao, Yingze" sort="Zhao, Yingze" uniqKey="Zhao Y" first="Yingze" last="Zhao">Yingze Zhao</name>
<affiliation wicri:level="1"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of People’s Republic of China, National Institute for Viral Disease Control and Prevention,</institution>
<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Yuen, Kwok Yung" sort="Yuen, Kwok Yung" uniqKey="Yuen K" first="Kwok-Yung" last="Yuen">Kwok-Yung Yuen</name>
<affiliation wicri:level="1"><nlm:aff id="Aff6"><institution-wrap><institution-id institution-id-type="GRID">grid.194645.b</institution-id>
<institution-id institution-id-type="ISNI">0000000121742757</institution-id>
<institution>State Key Laboratory of Emerging Infectious Diseases, The University of Hong Kong,</institution>
<institution>Hong Kong Special Administrative Region,</institution>
</institution-wrap>
Hong Kong, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Hong Kong</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Liu, William J" sort="Liu, William J" uniqKey="Liu W" first="William J." last="Liu">William J. Liu</name>
<affiliation wicri:level="1"><nlm:aff id="Aff4"><institution-wrap><institution-id institution-id-type="ISNI">0000 0001 0348 3990</institution-id>
<institution-id institution-id-type="GRID">grid.268099.c</institution-id>
<institution>College of Laboratory Medicine and Life Sciences,</institution>
<institution>Wenzhou Medical University,</institution>
</institution-wrap>
Wenzhou, 325035 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Wenzhou</wicri:regionArea>
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<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of People’s Republic of China, National Institute for Viral Disease Control and Prevention,</institution>
<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Lu, Lin" sort="Lu, Lin" uniqKey="Lu L" first="Lin" last="Lu">Lin Lu</name>
<affiliation wicri:level="1"><nlm:aff id="Aff2">Yunnan Provincial Center for Disease Control and Prevention, Kunming, 650022 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Yunnan Provincial Center for Disease Control and Prevention, Kunming</wicri:regionArea>
<wicri:noRegion>Kunming</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Gao, George F" sort="Gao, George F" uniqKey="Gao G" first="George F." last="Gao">George F. Gao</name>
<affiliation wicri:level="1"><nlm:aff id="Aff1"><institution-wrap><institution-id institution-id-type="ISNI">0000000119573309</institution-id>
<institution-id institution-id-type="GRID">grid.9227.e</institution-id>
<institution>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology,</institution>
<institution>Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100101 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="ISNI">0000 0004 1797 8419</institution-id>
<institution-id institution-id-type="GRID">grid.410726.6</institution-id>
<institution>University of Chinese Academy of Sciences,</institution>
</institution-wrap>
Beijing, 100049 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="Aff5"><institution-wrap><institution-id institution-id-type="ISNI">0000 0000 8803 2373</institution-id>
<institution-id institution-id-type="GRID">grid.198530.6</institution-id>
<institution>Key Laboratory of Medical Virology and Viral Diseases, Ministry of Health of People’s Republic of China, National Institute for Viral Disease Control and Prevention,</institution>
<institution>Chinese Center for Disease Control and Prevention,</institution>
</institution-wrap>
Beijing, 102206 China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Beijing</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series><title level="j">Science China. Life Sciences</title>
<idno type="ISSN">1674-7305</idno>
<idno type="eISSN">1869-1889</idno>
<imprint><date when="2017">2017</date>
</imprint>
</series>
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<term>China (epidemiology)</term>
<term>Chiroptera (virology)</term>
<term>Coronavirus (classification)</term>
<term>Coronavirus (genetics)</term>
<term>Coronavirus (isolation & purification)</term>
<term>Coronavirus Infections (epidemiology)</term>
<term>Coronavirus Infections (veterinary)</term>
<term>Coronavirus Infections (virology)</term>
<term>Evolution, Molecular</term>
<term>Follow-Up Studies</term>
<term>Genes, Viral (genetics)</term>
<term>Genome, Viral (genetics)</term>
<term>Phylogeny</term>
<term>Prevalence</term>
<term>RNA, Viral (genetics)</term>
<term>Recombination, Genetic</term>
<term>Sequence Analysis, DNA</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term>
<term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Chine (épidémiologie)</term>
<term>Chiroptera (virologie)</term>
<term>Coronavirus ()</term>
<term>Coronavirus (génétique)</term>
<term>Coronavirus (isolement et purification)</term>
<term>Gènes viraux (génétique)</term>
<term>Génome viral (génétique)</term>
<term>Infections à coronavirus (médecine vétérinaire)</term>
<term>Infections à coronavirus (virologie)</term>
<term>Infections à coronavirus (épidémiologie)</term>
<term>Phylogénie</term>
<term>Prévalence</term>
<term>Recombinaison génétique</term>
<term>Études de suivi</term>
<term>Évolution moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>China</term>
<term>Coronavirus Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term>
<term>Genes, Viral</term>
<term>Genome, Viral</term>
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<term>Coronavirus</term>
<term>Gènes viraux</term>
<term>Génome viral</term>
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</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>Infections à coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Coronavirus Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term>
<term>Infections à coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term>
<term>Coronavirus Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Chine</term>
<term>Infections à coronavirus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Evolution, Molecular</term>
<term>Follow-Up Studies</term>
<term>Phylogeny</term>
<term>Prevalence</term>
<term>Recombination, Genetic</term>
<term>Sequence Analysis, DNA</term>
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<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term>
<term>Animaux</term>
<term>Coronavirus</term>
<term>Phylogénie</term>
<term>Prévalence</term>
<term>Recombinaison génétique</term>
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<front><div type="abstract" xml:lang="en"><p>Bats are connected with the increasing numbers of emerging and re-emerging viruses that may break the species barrier and spread into the human population. Coronaviruses are one of the most common viruses discovered in bats, which were considered as the natural source of recent human-susceptible coronaviruses, i.e. SARS-COV and MERS-CoV. Our previous study reported the discovery of a bat-derived putative cross-family recombinant coronavirus with a reovirus gene <italic>p10</italic>
, named as Ro-BatCoV GCCDC1. In this report, through a two-year follow-up of a special bat population in one specific cave of south China, we illustrate that Ro-BatCoV GCCDC1 persistently circulates among bats. Notably, through the longitudinal observation, we identified the dynamic evolution of Ro-BatCoV GCCDC1 in bats represented by continuously recombination events. Our study provides the first glimpse of the virus evolution in one longitudinally observed bat population cohort and underlines the surveillance and pre-warning of potential interspecies transmittable viruses in bats.</p>
</div>
</front>
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</TEI>
<affiliations><list><country><li>République populaire de Chine</li>
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</affiliations>
</record>
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