faso < fast < faster

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List of bibliographic references indexed by fast

Number of relevant bibliographic references: 41.
[0-20] [0 - 20][0 - 41][20-40]

Ident.	Authors (with country if any)	Title
000081 (2020)	Gaëtan Benoit [France] ; Mahendra Mariadassou [France] ; Stéphane Robin [France] ; Sophie Schbath [France] ; Pierre Peterlongo [France] ; Claire Lemaitre [France]	SimkaMin: fast and resource frugal de novo comparative metagenomics.
000134 (2020)	Jiang Hu [République populaire de Chine] ; Junpeng Fan [République populaire de Chine] ; Zongyi Sun [République populaire de Chine] ; Shanlin Liu [République populaire de Chine]	NextPolish: a fast and efficient genome polishing tool for long-read assembly.
000195 (2020)	Christopher Pockrandt [États-Unis] ; Mai Alzamel [Royaume-Uni] ; Costas S. Iliopoulos [Royaume-Uni] ; Knut Reinert [Allemagne]	GenMap: Ultra-fast Computation of Genome Mappability.
000359 (2019)	Xiao Hu ; Iddo Friedberg	SwiftOrtho: A fast, memory-efficient, multiple genome orthology classifier
000570 (2019)	Yuansheng Liu [Australie] ; Leo Yu Zhang [Australie] ; Jinyan Li [Australie]	Fast detection of maximal exact matches via fixed sampling of query K-mers and Bloom filtering of index K-mers.
000571 (2019)	John A. Lees [États-Unis] ; Simon R. Harris [Royaume-Uni] ; Gerry Tonkin-Hill [Royaume-Uni] ; Rebecca A. Gladstone [Royaume-Uni] ; Stephanie W. Lo [Royaume-Uni] ; Jeffrey N. Weiser [États-Unis] ; Jukka Corander [Royaume-Uni] ; Stephen D. Bentley [Royaume-Uni] ; Nicholas J. Croucher [Royaume-Uni]	Fast and flexible bacterial genomic epidemiology with PopPUNK.
000572 (2019)	Leonardo Pellegrina [Italie] ; Cinzia Pizzi [Italie] ; Fabio Vandin [Italie]	Fast Approximation of Frequent k-Mers and Applications to Metagenomics.
000688 (2019)	Sridevi Maharaj [États-Unis] ; Brennan Tracy [États-Unis] ; Wayne B. Hayes [États-Unis]	BLANT-fast graphlet sampling tool.
000698 (2019)	Umberto Ferraro Petrillo [Italie] ; Mara Sorella [Italie] ; Giuseppe Cattaneo [Italie] ; Raffaele Giancarlo [Italie] ; Simona E. Rombo [Italie]	Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics
000926 (2018)	F. P. Breitwieser [États-Unis] ; D. N. Baker [États-Unis] ; S. L. Salzberg [États-Unis]	KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
000972 (2018)	Samuele Girotto ; Matteo Comin ; Cinzia Pizzi	FSH: fast spaced seed hashing exploiting adjacent hashes
000A43 (2018)	Xin Li [États-Unis] ; Chong Chu [États-Unis] ; Jingwen Pei [États-Unis] ; Ion M Ndoiu [États-Unis] ; Yufeng Wu [États-Unis]	CircMarker: a fast and accurate algorithm for circular RNA detection
000A88 (2018)	Magali Jaillard [France] ; Leandro Lima [France] ; Maud Tournoud [France] ; Pierre Mahé [France] ; Alex Van Belkum [France] ; Vincent Lacroix [France] ; Laurent Jacob [France]	A fast and agnostic method for bacterial genome-wide association studies: Bridging the gap between k-mers and genetic events
000B08 (2017)	Anuj Gupta [États-Unis] ; I King Jordan [États-Unis] ; Lavanya Rishishwar [États-Unis]	stringMLST: a fast k-mer based tool for multilocus sequence typing.
000B81 (2017)	M Rt Roosaare [Estonie] ; Mihkel Vaher [Estonie] ; Lauris Kaplinski [Estonie] ; M Rt Möls [Estonie] ; Reidar Andreson [Estonie] ; Maarja Lepamets [Estonie] ; Triinu K Ressaar [Estonie] ; Paul Naaber [Estonie] ; Siiri K Ljalg [Estonie] ; Maido Remm [Estonie]	StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees
000D76 (2017)	Marius Erbert ; Steffen Rechner ; Matthias Müller-Hannemann	Gerbil: a fast and memory-efficient k-mer counter with GPU-support
001080 (2016)	Qiang Yu [République populaire de Chine] ; Hongwei Huo [République populaire de Chine] ; Dazheng Feng [République populaire de Chine]	PairMotifChIP: A Fast Algorithm for Discovery of Patterns Conserved in Large ChIP-seq Data Sets
001159 (2016)	Maria Hauser [Allemagne] ; Martin Steinegger [Allemagne] ; Johannes Söding [Allemagne]	MMseqs software suite for fast and deep clustering and searching of large protein sequence sets.
001177 (2016)	Sara El-Metwally [Égypte] ; Magdi Zakaria [Égypte] ; Taher Hamza [Égypte]	LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads.
001253 (2016)	Ariya Shajii [États-Unis] ; Deniz Yorukoglu ; Yun William Yu [États-Unis] ; Bonnie Berger [États-Unis]	Fast genotyping of known SNPs through approximate k-mer matching.
001254 (2016)	Peter Menzel [Danemark] ; Kim Lee Ng [Danemark] ; Anders Krogh [Danemark]	Fast and sensitive taxonomic classification for metagenomics with Kaiju

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