1470-8744 < 1471-2105 < 1471-213X

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List of bibliographic references indexed by 1471-2105

Number of relevant bibliographic references: 53.
[0-20] [0 - 20][0 - 50][20-40]

Ident.	Authors (with country if any)	Title
000317 (2019)	Xiaolong Zhang ; Yanyan Shao ; Jichao Tian ; Yuwei Liao ; Peiying Li ; Yu Zhang ; Jun Chen ; Zhiguang Li [République populaire de Chine]	pTrimmer: An efficient tool to trim primers of multiplex deep sequencing data
000333 (2019)	Ryan C. Shean [États-Unis] ; Negar Makhsous [États-Unis] ; Graham D. Stoddard [États-Unis] ; Michelle J. Lin [États-Unis] ; Alexander L. Greninger [États-Unis]	VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank
000414 (2019)	Tobias Neumann [Autriche] ; Veronika A. Herzog [Autriche] ; Matthias Muhar [Autriche] ; Arndt Von Haeseler [Autriche] ; Johannes Zuber [Autriche] ; Stefan L. Ameres [Autriche] ; Philipp Rescheneder [Autriche]	Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets
000429 (2019)	Akio Miyao [Japon] ; Jianyu Song Kiyomiya [Japon] ; Keiko Iida [Japon] ; Koji Doi [Japon] ; Hiroshi Yasue [Japon]	Polymorphic edge detection (PED): two efficient methods of polymorphism detection from next-generation sequencing data
000439 (2019)	Chuanyan Wu [République populaire de Chine, Suède] ; Rui Gao [République populaire de Chine] ; Yusen Zhang [République populaire de Chine] ; Yang De Marinis [Suède]	PTPD: predicting therapeutic peptides by deep learning and word2vec
000484 (2019)	Jia Qian ; Matteo Comin	MetaCon: unsupervised clustering of metagenomic contigs with probabilistic k-mers statistics and coverage
000680 (2019)	Yoshihiro Shibuya [Italie, France] ; Matteo Comin [Italie]	Better quality score compression through sequence-based quality smoothing
000683 (2019)	Akshay Tambe [États-Unis] ; Lior Pachter [États-Unis]	Barcode identification for single cell genomics
000698 (2019)	Umberto Ferraro Petrillo [Italie] ; Mara Sorella [Italie] ; Giuseppe Cattaneo [Italie] ; Raffaele Giancarlo [Italie] ; Simona E. Rombo [Italie]	Analyzing big datasets of genomic sequences: fast and scalable collection of k-mer statistics
000732 (2019)	Jianghui Wen [République populaire de Chine] ; Yeshu Liu [République populaire de Chine] ; Yu Shi [République populaire de Chine] ; Haoran Huang [République populaire de Chine] ; Bing Deng [République populaire de Chine] ; Xinping Xiao [République populaire de Chine]	A classification model for lncRNA and mRNA based on k-mers and a convolutional neural network
000819 (2018)	Igor Saggese [Italie] ; Elisa Bona [Italie] ; Max Conway ; Francesco Favero [Italie] ; Marco Ladetto [Italie] ; Pietro Li ; Giovanni Manzini [Italie] ; Flavio Mignone [Italie]	STAble: a novel approach to de novo assembly of RNA-seq data and its application in a metabolic model network based metatranscriptomic workflow
000820 (2018)	Jie Lin [République populaire de Chine] ; Jing Wei [République populaire de Chine] ; Donald Adjeroh [États-Unis] ; Bing-Hua Jiang ; Yue Jiang [République populaire de Chine]	SSAW: A new sequence similarity analysis method based on the stationary discrete wavelet transform
000853 (2018)	Pierre Mahé ; Maud Tournoud	Predicting bacterial resistance from whole-genome sequences using k-mers and stability selection
000904 (2018)	Yasunobu Okamura ; Kengo Kinoshita	Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data
000992 (2018)	Samuele Girotto ; Matteo Comin ; Cinzia Pizzi	Efficient computation of spaced seed hashing with block indexing
000A32 (2018)	Shuxiang Ruan ; Gary D. Stormo	Comparison of discriminative motif optimization using matrix and DNA shape-based models
000A55 (2018)	Carl G. De Boer [États-Unis] ; Aviv Regev [États-Unis]	BROCKMAN: deciphering variance in epigenomic regulators by k-mer factorization
000B79 (2017)	Saghi Nojoomi [États-Unis] ; Patrice Koehl [États-Unis]	String kernels for protein sequence comparisons: improved fold recognition
000C59 (2017)	Kosai Al-Nakeeb ; Thomas Nordahl Petersen ; Thomas Sicheritz-Pontén	Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data
000C95 (2017)	Malik Yousef [Israël] ; Waleed Khalifa [Israël] ; Lhan Erkin Acar ; Jens Allmer	MicroRNA categorization using sequence motifs and k-mers
000D00 (2017)	Dinghua Li [Hong Kong] ; Yukun Huang [Hong Kong] ; Chi-Ming Leung [Hong Kong] ; Ruibang Luo [Hong Kong] ; Hing-Fung Ting [Hong Kong] ; Tak-Wah Lam [Hong Kong]	MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs

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