Lighter: fast and memory-efficient sequencing error correction without counting
Identifieur interne : 001B97 ( Main/Exploration ); précédent : 001B96; suivant : 001B98Lighter: fast and memory-efficient sequencing error correction without counting
Auteurs : Li Song [États-Unis] ; Liliana Florea [États-Unis] ; Ben Langmead [États-Unis]Source :
- Genome Biology [ 1465-6906 ] ; 2014.
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Abstract
Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting
The online version of this article (doi:10.1186/s13059-014-0509-9) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1186/s13059-014-0509-9
PubMed: 25398208
PubMed Central: 4248469
Affiliations:
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Baltimore</wicri:regionArea><placeName><settlement type="city">Baltimore</settlement><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Florea, Liliana" sort="Florea, Liliana" uniqKey="Florea L" first="Liliana" last="Florea">Liliana Florea</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Department of Computer Science, Johns Hopkins University, Baltimore, 21218 USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, Johns Hopkins University, Baltimore</wicri:regionArea><placeName><settlement type="city">Baltimore</settlement><region type="state">Maryland</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, 21205 USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore</wicri:regionArea><placeName><settlement type="city">Baltimore</settlement><region type="state">Maryland</region></placeName></affiliation></author><author><name sortKey="Langmead, Ben" sort="Langmead, Ben" uniqKey="Langmead B" first="Ben" last="Langmead">Ben Langmead</name><affiliation wicri:level="3"><nlm:aff id="Aff1">Department of Computer Science, Johns Hopkins University, Baltimore, 21218 USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer Science, Johns Hopkins University, Baltimore</wicri:regionArea><placeName><settlement type="city">Baltimore</settlement><region type="state">Maryland</region></placeName></affiliation><affiliation wicri:level="3"><nlm:aff id="Aff2">McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, 21205 USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>McKusick-Nathans Institute of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore</wicri:regionArea><placeName><settlement type="city">Baltimore</settlement><region type="state">Maryland</region></placeName></affiliation></author></analytic><series><title level="j">Genome Biology</title><idno type="ISSN">1465-6906</idno><idno type="eISSN">1465-6914</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Computational Biology</term><term>High-Throughput Nucleotide Sequencing (methods)</term><term>Humans</term><term>Quality Control</term><term>Sequence Analysis, DNA</term><term>Software</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Biologie informatique</term><term>Contrôle de qualité</term><term>Humains</term><term>Logiciel</term><term>Séquençage nucléotidique à haut débit ()</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>High-Throughput Nucleotide Sequencing</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Computational Biology</term><term>Humans</term><term>Quality Control</term><term>Sequence Analysis, DNA</term><term>Software</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Biologie informatique</term><term>Contrôle de qualité</term><term>Humains</term><term>Logiciel</term><term>Séquençage nucléotidique à haut débit</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Lighter is a fast, memory-efficient tool for correcting sequencing errors. Lighter avoids counting <italic>k</italic>-mers. Instead, it uses a pair of Bloom filters, one holding a sample of the input <italic>k</italic>-mers and the other holding <italic>k</italic>-mers likely to be correct. As long as the sampling fraction is adjusted in inverse proportion to the depth of sequencing, Bloom filter size can be held constant while maintaining near-constant accuracy. Lighter is parallelized, uses no secondary storage, and is both faster and more memory-efficient than competing approaches while achieving comparable accuracy.</p><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1186/s13059-014-0509-9) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Glenn, Tc" uniqKey="Glenn T">TC Glenn</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Pevzner, Pa" uniqKey="Pevzner P">PA Pevzner</name></author><author><name sortKey="Tang, H" uniqKey="Tang H">H Tang</name></author><author><name sortKey="Waterman, Ms" uniqKey="Waterman M">MS Waterman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chaisson, M" uniqKey="Chaisson M">M Chaisson</name></author><author><name sortKey="Pevzner, P" uniqKey="Pevzner P">P Pevzner</name></author><author><name sortKey="Tang, H" uniqKey="Tang H">H Tang</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schroder, J" uniqKey="Schroder J">J Schröder</name></author><author><name sortKey="Schroder, H" uniqKey="Schroder H">H Schröder</name></author><author><name sortKey="Puglisi, Sj" uniqKey="Puglisi S">SJ Puglisi</name></author><author><name sortKey="Sinha, R" uniqKey="Sinha R">R Sinha</name></author><author><name sortKey="Schmidt, B" uniqKey="Schmidt B">B Schmidt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ilie, L" uniqKey="Ilie L">L Ilie</name></author><author><name sortKey="Fazayeli, F" uniqKey="Fazayeli F">F Fazayeli</name></author><author><name sortKey="Ilie, S" uniqKey="Ilie S">S Ilie</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Salmela, L" uniqKey="Salmela L">L Salmela</name></author><author><name sortKey="Schroder, J" uniqKey="Schroder J">J Schröder</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kao, W C" uniqKey="Kao W">W-C Kao</name></author><author><name sortKey="Chan, Ah" uniqKey="Chan A">AH Chan</name></author><author><name sortKey="Song, Ys" uniqKey="Song Y">YS Song</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yang, X" uniqKey="Yang X">X Yang</name></author><author><name sortKey="Dorman, Ks" uniqKey="Dorman K">KS Dorman</name></author><author><name sortKey="Aluru, S" uniqKey="Aluru S">S Aluru</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Medvedev, P" uniqKey="Medvedev P">P Medvedev</name></author><author><name sortKey="Scott, E" uniqKey="Scott E">E Scott</name></author><author><name sortKey="Kakaradov, B" uniqKey="Kakaradov B">B Kakaradov</name></author><author><name sortKey="Pevzner, P" uniqKey="Pevzner P">P Pevzner</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kelley, Dr" uniqKey="Kelley D">DR Kelley</name></author><author><name sortKey="Schatz, Mc" uniqKey="Schatz M">MC Schatz</name></author><author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Marcais, G" uniqKey="Marcais G">G Marçais</name></author><author><name sortKey="Kingsford, C" uniqKey="Kingsford C">C Kingsford</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Shi, H" uniqKey="Shi H">H Shi</name></author><author><name sortKey="Schmidt, B" uniqKey="Schmidt B">B Schmidt</name></author><author><name sortKey="Liu, W" uniqKey="Liu W">W Liu</name></author><author><name sortKey="Muller Wittig, W" uniqKey="Muller Wittig W">W Müller-Wittig</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y Liu</name></author><author><name sortKey="Schroder, J" uniqKey="Schroder J">J Schröder</name></author><author><name sortKey="Schmidt, B" uniqKey="Schmidt B">B Schmidt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Heo, Y" uniqKey="Heo Y">Y Heo</name></author><author><name sortKey="Wu, X L" uniqKey="Wu X">X-L Wu</name></author><author><name sortKey="Chen, D" uniqKey="Chen D">D Chen</name></author><author><name sortKey="Ma, J" uniqKey="Ma J">J Ma</name></author><author><name sortKey="Hwu, W M" uniqKey="Hwu W">W-M Hwu</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Bloom, Bh" uniqKey="Bloom B">BH Bloom</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Tarkoma, S" uniqKey="Tarkoma S">S Tarkoma</name></author><author><name sortKey="Rothenberg, Ce" uniqKey="Rothenberg C">CE Rothenberg</name></author><author><name sortKey="Lagerspetz, E" uniqKey="Lagerspetz E">E Lagerspetz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pell, J" uniqKey="Pell J">J Pell</name></author><author><name sortKey="Hintze, A" uniqKey="Hintze A">A Hintze</name></author><author><name sortKey="Canino Koning, R" uniqKey="Canino Koning R">R Canino-Koning</name></author><author><name sortKey="Howe, A" uniqKey="Howe A">A Howe</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author><author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Jones, Dc" uniqKey="Jones D">DC Jones</name></author><author><name sortKey="Ruzzo, Wl" uniqKey="Ruzzo W">WL Ruzzo</name></author><author><name sortKey="Peng, X" uniqKey="Peng X">X Peng</name></author><author><name sortKey="Katze, Mg" uniqKey="Katze M">MG Katze</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Melsted, P" uniqKey="Melsted P">P Melsted</name></author><author><name sortKey="Pritchard, Jk" uniqKey="Pritchard J">JK Pritchard</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Luo, R" uniqKey="Luo R">R Luo</name></author><author><name sortKey="Liu, B" uniqKey="Liu B">B Liu</name></author><author><name sortKey="Xie, Y" uniqKey="Xie Y">Y Xie</name></author><author><name sortKey="Li, Z" uniqKey="Li Z">Z Li</name></author><author><name sortKey="Huang, W" uniqKey="Huang W">W Huang</name></author><author><name sortKey="Yuan, J" uniqKey="Yuan J">J Yuan</name></author><author><name sortKey="He, G" uniqKey="He G">G He</name></author><author><name sortKey="Chen, Y" uniqKey="Chen Y">Y Chen</name></author><author><name sortKey="Pan, Q" uniqKey="Pan Q">Q Pan</name></author><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y Liu</name></author><author><name sortKey="Tang, J" uniqKey="Tang J">J Tang</name></author><author><name sortKey="Wu, G" uniqKey="Wu G">G Wu</name></author><author><name sortKey="Zhang, H" uniqKey="Zhang H">H Zhang</name></author><author><name sortKey="Shi, Y" uniqKey="Shi Y">Y Shi</name></author><author><name sortKey="Liu, Y" uniqKey="Liu Y">Y Liu</name></author><author><name sortKey="Yu, C" uniqKey="Yu C">C Yu</name></author><author><name sortKey="Wang, B" uniqKey="Wang B">B Wang</name></author><author><name sortKey="Lu, Y" uniqKey="Lu Y">Y Lu</name></author><author><name sortKey="Han, C" uniqKey="Han C">C Han</name></author><author><name sortKey="Cheung, Dw" uniqKey="Cheung D">DW Cheung</name></author><author><name sortKey="Yiu, S M" uniqKey="Yiu S">S-M Yiu</name></author><author><name sortKey="Peng, S" uniqKey="Peng S">S Peng</name></author><author><name sortKey="Xiaoqian, Z" uniqKey="Xiaoqian Z">Z Xiaoqian</name></author><author><name sortKey="Liu, G" uniqKey="Liu G">G Liu</name></author><author><name sortKey="Liao, X" uniqKey="Liao X">X Liao</name></author><author><name sortKey="Li, Y" uniqKey="Li Y">Y Li</name></author><author><name sortKey="Yang, H" uniqKey="Yang H">H Yang</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J Wang</name></author><author><name sortKey="Lam, T W" uniqKey="Lam T">T-W Lam</name></author><author><name sortKey="Wang, J" uniqKey="Wang J">J Wang</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Huang, W" uniqKey="Huang W">W Huang</name></author><author><name sortKey="Li, L" uniqKey="Li L">L Li</name></author><author><name sortKey="Myers, Jr" uniqKey="Myers J">JR Myers</name></author><author><name sortKey="Marth, Gt" uniqKey="Marth G">GT Marth</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Langmead, B" uniqKey="Langmead B">B Langmead</name></author><author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Gurevich, A" uniqKey="Gurevich A">A Gurevich</name></author><author><name sortKey="Saveliev, V" uniqKey="Saveliev V">V Saveliev</name></author><author><name sortKey="Vyahhi, N" uniqKey="Vyahhi N">N Vyahhi</name></author><author><name sortKey="Tesler, G" uniqKey="Tesler G">G Tesler</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zerbino, Dr" uniqKey="Zerbino D">DR Zerbino</name></author><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Salzberg, Sl" uniqKey="Salzberg S">SL Salzberg</name></author><author><name sortKey="Phillippy, Am" uniqKey="Phillippy A">AM Phillippy</name></author><author><name sortKey="Zimin, A" uniqKey="Zimin A">A Zimin</name></author><author><name sortKey="Puiu, D" uniqKey="Puiu D">D Puiu</name></author><author><name sortKey="Magoc, T" uniqKey="Magoc T">T Magoc</name></author><author><name sortKey="Koren, S" uniqKey="Koren S">S Koren</name></author><author><name sortKey="Treangen, Tj" uniqKey="Treangen T">TJ Treangen</name></author><author><name sortKey="Schatz, Mc" uniqKey="Schatz M">MC Schatz</name></author><author><name sortKey="Delcher, Al" uniqKey="Delcher A">AL Delcher</name></author><author><name sortKey="Roberts, M" uniqKey="Roberts M">M Roberts</name></author><author><name sortKey="Marcais, G" uniqKey="Marcais G">G Marcais</name></author><author><name sortKey="Pop, M" uniqKey="Pop M">M Pop</name></author><author><name sortKey="Yorke, Ja" uniqKey="Yorke J">JA Yorke</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fan, L" uniqKey="Fan L">L Fan</name></author><author><name sortKey="Cao, P" uniqKey="Cao P">P Cao</name></author><author><name sortKey="Almeida, J" uniqKey="Almeida J">J Almeida</name></author><author><name sortKey="Broder, Az" uniqKey="Broder A">AZ Broder</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Cormode, G" uniqKey="Cormode G">G Cormode</name></author><author><name sortKey="Muthukrishnan, S" uniqKey="Muthukrishnan S">S Muthukrishnan</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Nakamura, K" uniqKey="Nakamura K">K Nakamura</name></author><author><name sortKey="Oshima, T" uniqKey="Oshima T">T Oshima</name></author><author><name sortKey="Morimoto, T" uniqKey="Morimoto T">T Morimoto</name></author><author><name sortKey="Ikeda, S" uniqKey="Ikeda S">S Ikeda</name></author><author><name sortKey="Yoshikawa, H" uniqKey="Yoshikawa H">H Yoshikawa</name></author><author><name sortKey="Shiwa, Y" uniqKey="Shiwa Y">Y Shiwa</name></author><author><name sortKey="Ishikawa, S" uniqKey="Ishikawa S">S Ishikawa</name></author><author><name sortKey="Linak, Mc" uniqKey="Linak M">MC Linak</name></author><author><name sortKey="Hirai, A" uniqKey="Hirai A">A Hirai</name></author><author><name sortKey="Takahashi, H" uniqKey="Takahashi H">H Takahashi</name></author><author><name sortKey="Ogasawara, N" uniqKey="Ogasawara N">N Ogasawara</name></author><author><name sortKey="Kanaya, S" uniqKey="Kanaya S">S Kanaya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chikhi, R" uniqKey="Chikhi R">R Chikhi</name></author><author><name sortKey="Medvedev, P" uniqKey="Medvedev P">P Medvedev</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>États-Unis</li></country><region><li>Maryland</li></region><settlement><li>Baltimore</li></settlement></list><tree><country name="États-Unis"><region name="Maryland"><name sortKey="Song, Li" sort="Song, Li" uniqKey="Song L" first="Li" last="Song">Li Song</name></region><name sortKey="Florea, Liliana" sort="Florea, Liliana" uniqKey="Florea L" first="Liliana" last="Florea">Liliana Florea</name><name sortKey="Florea, Liliana" sort="Florea, Liliana" uniqKey="Florea L" first="Liliana" last="Florea">Liliana Florea</name><name sortKey="Langmead, Ben" sort="Langmead, Ben" uniqKey="Langmead B" first="Ben" last="Langmead">Ben Langmead</name><name sortKey="Langmead, Ben" sort="Langmead, Ben" uniqKey="Langmead B" first="Ben" last="Langmead">Ben Langmead</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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