Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.
Identifieur interne : 002783 ( Main/Exploration ); précédent : 002782; suivant : 002784Metal ion CHElate-aSSisted LIGAtion (CHESS LIGA) for SNP detection on microarrays.
Auteurs : Thi Hien Le [Russie] ; Tatiana S. Oretskaya ; Timofei S. ZatsepinSource :
- Bioorganic & medicinal chemistry letters [ 1464-3405 ] ; 2009.
Descripteurs français
- KwdFr :
- ADN (), Chélateurs (), Données de séquences moléculaires, Humains, Ions (), Métaux (), Nickel (), Oligonucléotides, Polymorphisme de nucléotide simple, Procédures d'analyse sur micropuce (), Solubilité, Sondes d'ADN (), Séquence nucléotidique, Séquençage par oligonucléotides en batterie, Tétrahydrofolates ().
- MESH :
English descriptors
- KwdEn :
- Base Sequence, Chelating Agents (chemistry), DNA (chemistry), DNA Probes (chemistry), Humans, Ions (chemistry), Metals (chemistry), Microchip Analytical Procedures (methods), Molecular Sequence Data, Nickel (chemistry), Oligonucleotide Array Sequence Analysis, Oligonucleotides, Polymorphism, Single Nucleotide, Solubility, Tetrahydrofolates (chemistry).
- MESH :
- chemical , chemistry : Chelating Agents, DNA, DNA Probes, Ions, Metals, Nickel, Tetrahydrofolates.
- methods : Microchip Analytical Procedures.
- Base Sequence, Humans, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Oligonucleotides, Polymorphism, Single Nucleotide, Solubility.
Abstract
We developed a metal ion chelate-assisted ligation for SNP detection by microarray. An oligonucleotide probe was separated into two 9-10-mers bearing iminodiacetic residues at the gap point. Duplex formation with the DNA target was possible only if nickel ions were added, but a nucleotide substitution opposite the gap point prevented duplex formation. Here we demonstrate the application of this approach for SNP detection (A1298C) within the 5,10-methylenetetrahydrofolate reductase gene on a microarray.
DOI: 10.1016/j.bmcl.2009.06.033
PubMed: 19574044
Affiliations:
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Le document en format XML
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<term>DNA Probes (chemistry)</term>
<term>Humans</term>
<term>Ions (chemistry)</term>
<term>Metals (chemistry)</term>
<term>Microchip Analytical Procedures (methods)</term>
<term>Molecular Sequence Data</term>
<term>Nickel (chemistry)</term>
<term>Oligonucleotide Array Sequence Analysis</term>
<term>Oligonucleotides</term>
<term>Polymorphism, Single Nucleotide</term>
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<term>Ions ()</term>
<term>Métaux ()</term>
<term>Nickel ()</term>
<term>Oligonucléotides</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Procédures d'analyse sur micropuce ()</term>
<term>Solubilité</term>
<term>Sondes d'ADN ()</term>
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<term>Tétrahydrofolates ()</term>
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<term>Ions</term>
<term>Metals</term>
<term>Nickel</term>
<term>Tetrahydrofolates</term>
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<term>Molecular Sequence Data</term>
<term>Oligonucleotide Array Sequence Analysis</term>
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<term>Solubility</term>
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<term>Métaux</term>
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<term>Oligonucléotides</term>
<term>Polymorphisme de nucléotide simple</term>
<term>Procédures d'analyse sur micropuce</term>
<term>Solubilité</term>
<term>Sondes d'ADN</term>
<term>Séquence nucléotidique</term>
<term>Séquençage par oligonucléotides en batterie</term>
<term>Tétrahydrofolates</term>
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<front><div type="abstract" xml:lang="en">We developed a metal ion chelate-assisted ligation for SNP detection by microarray. An oligonucleotide probe was separated into two 9-10-mers bearing iminodiacetic residues at the gap point. Duplex formation with the DNA target was possible only if nickel ions were added, but a nucleotide substitution opposite the gap point prevented duplex formation. Here we demonstrate the application of this approach for SNP detection (A1298C) within the 5,10-methylenetetrahydrofolate reductase gene on a microarray.</div>
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<name sortKey="Zatsepin, Timofei S" sort="Zatsepin, Timofei S" uniqKey="Zatsepin T" first="Timofei S" last="Zatsepin">Timofei S. Zatsepin</name>
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