Serveur d'exploration MERS

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Aiming for benchmark accuracy with the many-body expansion.

Identifieur interne : 001D53 ( Main/Exploration ); précédent : 001D52; suivant : 001D54

Aiming for benchmark accuracy with the many-body expansion.

Auteurs : Ryan M. Richard [États-Unis] ; Ka Un Lao ; John M. Herbert

Source :

RBID : pubmed:24883986

Abstract

Conspectus The past 15 years have witnessed an explosion of activity in the field of fragment-based quantum chemistry, whereby ab initio electronic structure calculations are performed on very large systems by decomposing them into a large number of relatively small subsystem calculations and then reassembling the subsystem data in order to approximate supersystem properties. Most of these methods are based, at some level, on the so-called many-body (or "n-body") expansion, which ultimately requires calculations on monomers, dimers, ..., n-mers of fragments. To the extent that a low-order n-body expansion can reproduce supersystem properties, such methods replace an intractable supersystem calculation with a large number of easily distributable subsystem calculations. This holds great promise for performing, for example, "gold standard" CCSD(T) calculations on large molecules, clusters, and condensed-phase systems. The literature is awash in a litany of fragment-based methods, each with their own working equations and terminology, which presents a formidable language barrier to the uninitiated reader. We have sought to unify these methods under a common formalism, by means of a generalized many-body expansion that provides a universal energy formula encompassing not only traditional n-body cluster expansions but also methods designed for macromolecules, in which the supersystem is decomposed into overlapping fragments. This formalism allows various fragment-based methods to be systematically classified, primarily according to how the fragments are constructed and how higher-order n-body interactions are approximated. This classification furthermore suggests systematic ways to improve the accuracy. Whereas n-body approaches have been thoroughly tested at low levels of theory in small noncovalent clusters, we have begun to explore the efficacy of these methods for large systems, with the goal of reproducing benchmark-quality calculations, ideally meaning complete-basis CCSD(T). For high accuracy, it is necessary to deal with basis-set superposition error, and this necessitates the use of many-body counterpoise corrections and electrostatic embedding methods that are stable in large basis sets. Tests on small noncovalent clusters suggest that total energies of complete-basis CCSD(T) quality can indeed be obtained, with dramatic reductions in aggregate computing time. On the other hand, naive applications of low-order n-body expansions may benefit from significant error cancellation, wherein basis-set superposition error partially offsets the effects of higher-order n-body terms, affording fortuitously good results in some cases. Basis sets that afford reasonable results in small clusters behave erratically in larger systems and when high-order n-body expansions are employed. For large systems, and (H2O)N≳30 is large enough, the combinatorial nature of the many-body expansion presents the possibility of serious loss-of-precision problems that are not widely appreciated. Tight thresholds are required in the subsystem calculations in order to stave off size-dependent errors, and high-order expansions may be inherently numerically ill-posed. Moreover, commonplace script- or driver-based implementations of the n-body expansion may be especially susceptible to loss-of-precision problems in large systems. These results suggest that the many-body expansion is not yet ready to be treated as a "black-box" quantum chemistry method.

DOI: 10.1021/ar500119q
PubMed: 24883986


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Aiming for benchmark accuracy with the many-body expansion.</title>
<author>
<name sortKey="Richard, Ryan M" sort="Richard, Ryan M" uniqKey="Richard R" first="Ryan M" last="Richard">Ryan M. Richard</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Chemistry and Biochemistry, The Ohio State University , Columbus, Ohio 43210, United States.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Chemistry and Biochemistry, The Ohio State University , Columbus, Ohio 43210</wicri:regionArea>
<wicri:noRegion>Ohio 43210</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lao, Ka Un" sort="Lao, Ka Un" uniqKey="Lao K" first="Ka Un" last="Lao">Ka Un Lao</name>
</author>
<author>
<name sortKey="Herbert, John M" sort="Herbert, John M" uniqKey="Herbert J" first="John M" last="Herbert">John M. Herbert</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2014">2014</date>
<idno type="RBID">pubmed:24883986</idno>
<idno type="pmid">24883986</idno>
<idno type="doi">10.1021/ar500119q</idno>
<idno type="wicri:Area/PubMed/Corpus">001951</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001951</idno>
<idno type="wicri:Area/PubMed/Curation">001951</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001951</idno>
<idno type="wicri:Area/PubMed/Checkpoint">001A05</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001A05</idno>
<idno type="wicri:Area/Ncbi/Merge">000D96</idno>
<idno type="wicri:Area/Ncbi/Curation">000D96</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">000D96</idno>
<idno type="wicri:Area/Main/Merge">001D68</idno>
<idno type="wicri:Area/Main/Curation">001D53</idno>
<idno type="wicri:Area/Main/Exploration">001D53</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Aiming for benchmark accuracy with the many-body expansion.</title>
<author>
<name sortKey="Richard, Ryan M" sort="Richard, Ryan M" uniqKey="Richard R" first="Ryan M" last="Richard">Ryan M. Richard</name>
<affiliation wicri:level="1">
<nlm:affiliation>Department of Chemistry and Biochemistry, The Ohio State University , Columbus, Ohio 43210, United States.</nlm:affiliation>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Chemistry and Biochemistry, The Ohio State University , Columbus, Ohio 43210</wicri:regionArea>
<wicri:noRegion>Ohio 43210</wicri:noRegion>
</affiliation>
</author>
<author>
<name sortKey="Lao, Ka Un" sort="Lao, Ka Un" uniqKey="Lao K" first="Ka Un" last="Lao">Ka Un Lao</name>
</author>
<author>
<name sortKey="Herbert, John M" sort="Herbert, John M" uniqKey="Herbert J" first="John M" last="Herbert">John M. Herbert</name>
</author>
</analytic>
<series>
<title level="j">Accounts of chemical research</title>
<idno type="eISSN">1520-4898</idno>
<imprint>
<date when="2014" type="published">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">Conspectus The past 15 years have witnessed an explosion of activity in the field of fragment-based quantum chemistry, whereby ab initio electronic structure calculations are performed on very large systems by decomposing them into a large number of relatively small subsystem calculations and then reassembling the subsystem data in order to approximate supersystem properties. Most of these methods are based, at some level, on the so-called many-body (or "n-body") expansion, which ultimately requires calculations on monomers, dimers, ..., n-mers of fragments. To the extent that a low-order n-body expansion can reproduce supersystem properties, such methods replace an intractable supersystem calculation with a large number of easily distributable subsystem calculations. This holds great promise for performing, for example, "gold standard" CCSD(T) calculations on large molecules, clusters, and condensed-phase systems. The literature is awash in a litany of fragment-based methods, each with their own working equations and terminology, which presents a formidable language barrier to the uninitiated reader. We have sought to unify these methods under a common formalism, by means of a generalized many-body expansion that provides a universal energy formula encompassing not only traditional n-body cluster expansions but also methods designed for macromolecules, in which the supersystem is decomposed into overlapping fragments. This formalism allows various fragment-based methods to be systematically classified, primarily according to how the fragments are constructed and how higher-order n-body interactions are approximated. This classification furthermore suggests systematic ways to improve the accuracy. Whereas n-body approaches have been thoroughly tested at low levels of theory in small noncovalent clusters, we have begun to explore the efficacy of these methods for large systems, with the goal of reproducing benchmark-quality calculations, ideally meaning complete-basis CCSD(T). For high accuracy, it is necessary to deal with basis-set superposition error, and this necessitates the use of many-body counterpoise corrections and electrostatic embedding methods that are stable in large basis sets. Tests on small noncovalent clusters suggest that total energies of complete-basis CCSD(T) quality can indeed be obtained, with dramatic reductions in aggregate computing time. On the other hand, naive applications of low-order n-body expansions may benefit from significant error cancellation, wherein basis-set superposition error partially offsets the effects of higher-order n-body terms, affording fortuitously good results in some cases. Basis sets that afford reasonable results in small clusters behave erratically in larger systems and when high-order n-body expansions are employed. For large systems, and (H2O)N≳30 is large enough, the combinatorial nature of the many-body expansion presents the possibility of serious loss-of-precision problems that are not widely appreciated. Tight thresholds are required in the subsystem calculations in order to stave off size-dependent errors, and high-order expansions may be inherently numerically ill-posed. Moreover, commonplace script- or driver-based implementations of the n-body expansion may be especially susceptible to loss-of-precision problems in large systems. These results suggest that the many-body expansion is not yet ready to be treated as a "black-box" quantum chemistry method. </div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>États-Unis</li>
</country>
</list>
<tree>
<noCountry>
<name sortKey="Herbert, John M" sort="Herbert, John M" uniqKey="Herbert J" first="John M" last="Herbert">John M. Herbert</name>
<name sortKey="Lao, Ka Un" sort="Lao, Ka Un" uniqKey="Lao K" first="Ka Un" last="Lao">Ka Un Lao</name>
</noCountry>
<country name="États-Unis">
<noRegion>
<name sortKey="Richard, Ryan M" sort="Richard, Ryan M" uniqKey="Richard R" first="Ryan M" last="Richard">Ryan M. Richard</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/MersV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001D53 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001D53 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    MersV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     pubmed:24883986
   |texte=   Aiming for benchmark accuracy with the many-body expansion.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:24883986" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a MersV1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Mon Apr 20 23:26:43 2020. Site generation: Sat Mar 27 09:06:09 2021