Serveur d'exploration MERS

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Epidemiology of a Novel Recombinant Middle East Respiratory Syndrome Coronavirus in Humans in Saudi Arabia

Identifieur interne : 001272 ( Main/Exploration ); précédent : 001271; suivant : 001273

Epidemiology of a Novel Recombinant Middle East Respiratory Syndrome Coronavirus in Humans in Saudi Arabia

Auteurs : Abdullah M. Assiri ; Claire M. Midgley [Géorgie (pays)] ; Glen R. Abedi ; Abdulaziz Bin Saeed ; Malak M. Almasri ; Xiaoyan Lu ; Hail M. Al-Abdely ; Osman Abdalla ; Mutaz Mohammed ; Homoud S. Algarni ; Raafat F. Alhakeem ; Senthilkumar K. Sakthivel ; Randa Nooh ; Zainab Alshayab ; Mohammad Alessa ; Ganesh Srinivasamoorthy ; Saeed Yahya Alqahtani ; Ali Kheyami ; Waleed Husein Hajomar ; Talib M. Banaser ; Ahmad Esmaeel ; Aron J. Hall ; Aaron T. Curns ; Azaibi Tamin ; Ali Abraheem Alsharef ; Dean Erdman ; John T. Watson ; Susan I. Gerber

Source :

RBID : PMC:5712457

Descripteurs français

English descriptors

Abstract

Abstract

Background. Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory illness in humans. Fundamental questions about circulating viruses and transmission routes remain.

Methods. We assessed routinely collected epidemiologic data for MERS-CoV cases reported in Saudi Arabia during 1 January–30 June 2015 and conducted a more detailed investigation of cases reported during February 2015. Available respiratory specimens were obtained for sequencing.

Results. During the study period, 216 MERS-CoV cases were reported. Full genome (n = 17) or spike gene sequences (n = 82) were obtained from 99 individuals. Most sequences (72 of 99 [73%]) formed a discrete, novel recombinant subclade (NRC-2015), which was detected in 6 regions and became predominant by June 2015. No clinical differences were noted between clades. Among 87 cases reported during February 2015, 13 had no recognized risks for secondary acquisition; 12 of these 13 also denied camel contact. Most viruses (8 of 9) from these 13 individuals belonged to NRC-2015.

Discussions. Our findings document the spread and eventual predominance of NRC-2015 in humans in Saudi Arabia during the first half of 2015. Our identification of cases without recognized risk factors but with similar virus sequences indicates the need for better understanding of risk factors for MERS-CoV transmission.


Url:
DOI: 10.1093/infdis/jiw236
PubMed: 27302191
PubMed Central: 5712457


Affiliations:


Links toward previous steps (curation, corpus...)


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<name sortKey="Al Abdely, Hail M" sort="Al Abdely, Hail M" uniqKey="Al Abdely H" first="Hail M." last="Al-Abdely">Hail M. Al-Abdely</name>
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<name sortKey="Abdalla, Osman" sort="Abdalla, Osman" uniqKey="Abdalla O" first="Osman" last="Abdalla">Osman Abdalla</name>
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<name sortKey="Mohammed, Mutaz" sort="Mohammed, Mutaz" uniqKey="Mohammed M" first="Mutaz" last="Mohammed">Mutaz Mohammed</name>
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<name sortKey="Alhakeem, Raafat F" sort="Alhakeem, Raafat F" uniqKey="Alhakeem R" first="Raafat F." last="Alhakeem">Raafat F. Alhakeem</name>
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<name sortKey="Sakthivel, Senthilkumar K" sort="Sakthivel, Senthilkumar K" uniqKey="Sakthivel S" first="Senthilkumar K." last="Sakthivel">Senthilkumar K. Sakthivel</name>
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<name sortKey="Nooh, Randa" sort="Nooh, Randa" uniqKey="Nooh R" first="Randa" last="Nooh">Randa Nooh</name>
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<institution>Ministry of Health</institution>
</nlm:aff>
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<nlm:aff id="af3">
<addr-line>Field Epidemiology Training Program, Ministry of Health, Riyadh</addr-line>
,
<country>Kingdom of Saudi Arabia</country>
</nlm:aff>
<wicri:noCountry code="nlm country">Kingdom of Saudi Arabia</wicri:noCountry>
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<name sortKey="Alshayab, Zainab" sort="Alshayab, Zainab" uniqKey="Alshayab Z" first="Zainab" last="Alshayab">Zainab Alshayab</name>
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<institution>Ministry of Health</institution>
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<affiliation>
<nlm:aff id="af3">
<addr-line>Field Epidemiology Training Program, Ministry of Health, Riyadh</addr-line>
,
<country>Kingdom of Saudi Arabia</country>
</nlm:aff>
<wicri:noCountry code="nlm country">Kingdom of Saudi Arabia</wicri:noCountry>
</affiliation>
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<name sortKey="Alessa, Mohammad" sort="Alessa, Mohammad" uniqKey="Alessa M" first="Mohammad" last="Alessa">Mohammad Alessa</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
<affiliation>
<nlm:aff id="af3">
<addr-line>Field Epidemiology Training Program, Ministry of Health, Riyadh</addr-line>
,
<country>Kingdom of Saudi Arabia</country>
</nlm:aff>
<wicri:noCountry code="nlm country">Kingdom of Saudi Arabia</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Srinivasamoorthy, Ganesh" sort="Srinivasamoorthy, Ganesh" uniqKey="Srinivasamoorthy G" first="Ganesh" last="Srinivasamoorthy">Ganesh Srinivasamoorthy</name>
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<nlm:aff id="af4">
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</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
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</author>
<author>
<name sortKey="Alqahtani, Saeed Yahya" sort="Alqahtani, Saeed Yahya" uniqKey="Alqahtani S" first="Saeed Yahya" last="Alqahtani">Saeed Yahya Alqahtani</name>
<affiliation>
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Kheyami, Ali" sort="Kheyami, Ali" uniqKey="Kheyami A" first="Ali" last="Kheyami">Ali Kheyami</name>
<affiliation>
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Hajomar, Waleed Husein" sort="Hajomar, Waleed Husein" uniqKey="Hajomar W" first="Waleed Husein" last="Hajomar">Waleed Husein Hajomar</name>
<affiliation>
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Banaser, Talib M" sort="Banaser, Talib M" uniqKey="Banaser T" first="Talib M." last="Banaser">Talib M. Banaser</name>
<affiliation>
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Esmaeel, Ahmad" sort="Esmaeel, Ahmad" uniqKey="Esmaeel A" first="Ahmad" last="Esmaeel">Ahmad Esmaeel</name>
<affiliation>
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Hall, Aron J" sort="Hall, Aron J" uniqKey="Hall A" first="Aron J." last="Hall">Aron J. Hall</name>
<affiliation>
<nlm:aff id="af4">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Curns, Aaron T" sort="Curns, Aaron T" uniqKey="Curns A" first="Aaron T." last="Curns">Aaron T. Curns</name>
<affiliation>
<nlm:aff id="af4">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Tamin, Azaibi" sort="Tamin, Azaibi" uniqKey="Tamin A" first="Azaibi" last="Tamin">Azaibi Tamin</name>
<affiliation>
<nlm:aff id="af4">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Alsharef, Ali Abraheem" sort="Alsharef, Ali Abraheem" uniqKey="Alsharef A" first="Ali Abraheem" last="Alsharef">Ali Abraheem Alsharef</name>
<affiliation>
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Erdman, Dean" sort="Erdman, Dean" uniqKey="Erdman D" first="Dean" last="Erdman">Dean Erdman</name>
<affiliation>
<nlm:aff id="af4">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Watson, John T" sort="Watson, John T" uniqKey="Watson J" first="John T." last="Watson">John T. Watson</name>
<affiliation>
<nlm:aff id="af4">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
</affiliation>
</author>
<author>
<name sortKey="Gerber, Susan I" sort="Gerber, Susan I" uniqKey="Gerber S" first="Susan I." last="Gerber">Susan I. Gerber</name>
<affiliation>
<nlm:aff id="af4">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
</nlm:aff>
<wicri:noCountry code="subfield">National Center for Immunization and Respiratory Diseases</wicri:noCountry>
</affiliation>
</author>
</analytic>
<series>
<title level="j">The Journal of Infectious Diseases</title>
<idno type="ISSN">0022-1899</idno>
<idno type="eISSN">1537-6613</idno>
<imprint>
<date when="2016">2016</date>
</imprint>
</series>
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<keywords scheme="KwdEn" xml:lang="en">
<term>Adult</term>
<term>Aged</term>
<term>Aged, 80 and over</term>
<term>Cluster Analysis</term>
<term>Coronavirus Infections (epidemiology)</term>
<term>Female</term>
<term>Humans</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Middle East Respiratory Syndrome Coronavirus (classification)</term>
<term>Middle East Respiratory Syndrome Coronavirus (genetics)</term>
<term>Middle East Respiratory Syndrome Coronavirus (isolation & purification)</term>
<term>Molecular Epidemiology</term>
<term>Phylogeny</term>
<term>Saudi Arabia (epidemiology)</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
<term>Spike Glycoprotein, Coronavirus (genetics)</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr">
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Arabie saoudite (épidémiologie)</term>
<term>Coronavirus du syndrome respiratoire du Moyen-Orient ()</term>
<term>Coronavirus du syndrome respiratoire du Moyen-Orient (génétique)</term>
<term>Coronavirus du syndrome respiratoire du Moyen-Orient (isolement et purification)</term>
<term>Femelle</term>
<term>Glycoprotéine de spicule des coronavirus (génétique)</term>
<term>Humains</term>
<term>Infections à coronavirus (épidémiologie)</term>
<term>Jeune adulte</term>
<term>Mâle</term>
<term>Phylogénie</term>
<term>Similitude de séquences</term>
<term>Sujet âgé</term>
<term>Sujet âgé de 80 ans ou plus</term>
<term>Épidémiologie moléculaire</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en">
<term>Spike Glycoprotein, Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en">
<term>Middle East Respiratory Syndrome Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Saudi Arabia</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en">
<term>Middle East Respiratory Syndrome Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr">
<term>Coronavirus du syndrome respiratoire du Moyen-Orient</term>
<term>Glycoprotéine de spicule des coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en">
<term>Middle East Respiratory Syndrome Coronavirus</term>
</keywords>
<keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr">
<term>Coronavirus du syndrome respiratoire du Moyen-Orient</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr">
<term>Arabie saoudite</term>
<term>Infections à coronavirus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Adult</term>
<term>Aged</term>
<term>Aged, 80 and over</term>
<term>Cluster Analysis</term>
<term>Female</term>
<term>Humans</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Molecular Epidemiology</term>
<term>Phylogeny</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
<term>Young Adult</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Adulte</term>
<term>Adulte d'âge moyen</term>
<term>Analyse de regroupements</term>
<term>Analyse de séquence d'ADN</term>
<term>Coronavirus du syndrome respiratoire du Moyen-Orient</term>
<term>Femelle</term>
<term>Humains</term>
<term>Jeune adulte</term>
<term>Mâle</term>
<term>Phylogénie</term>
<term>Similitude de séquences</term>
<term>Sujet âgé</term>
<term>Sujet âgé de 80 ans ou plus</term>
<term>Épidémiologie moléculaire</term>
</keywords>
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</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<title>Abstract</title>
<p>
<bold>
<italic>Background.</italic>
</bold>
 Middle East respiratory syndrome coronavirus (MERS-CoV) causes severe respiratory illness in humans. Fundamental questions about circulating viruses and transmission routes remain.</p>
<p>
<bold>
<italic>Methods.</italic>
</bold>
 We assessed routinely collected epidemiologic data for MERS-CoV cases reported in Saudi Arabia during 1 January–30 June 2015 and conducted a more detailed investigation of cases reported during February 2015. Available respiratory specimens were obtained for sequencing.</p>
<p>
<bold>
<italic>Results.</italic>
</bold>
 During the study period, 216 MERS-CoV cases were reported. Full genome (n = 17) or spike gene sequences (n = 82) were obtained from 99 individuals. Most sequences (72 of 99 [73%]) formed a discrete, novel recombinant subclade (NRC-2015), which was detected in 6 regions and became predominant by June 2015. No clinical differences were noted between clades. Among 87 cases reported during February 2015, 13 had no recognized risks for secondary acquisition; 12 of these 13 also denied camel contact. Most viruses (8 of 9) from these 13 individuals belonged to NRC-2015.</p>
<p>
<bold>
<italic>Discussions.</italic>
</bold>
 Our findings document the spread and eventual predominance of NRC-2015 in humans in Saudi Arabia during the first half of 2015. Our identification of cases without recognized risk factors but with similar virus sequences indicates the need for better understanding of risk factors for MERS-CoV transmission.</p>
</div>
</front>
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<name sortKey="Gerber, Susan I" sort="Gerber, Susan I" uniqKey="Gerber S" first="Susan I." last="Gerber">Susan I. Gerber</name>
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<name sortKey="Mohammed, Mutaz" sort="Mohammed, Mutaz" uniqKey="Mohammed M" first="Mutaz" last="Mohammed">Mutaz Mohammed</name>
<name sortKey="Nooh, Randa" sort="Nooh, Randa" uniqKey="Nooh R" first="Randa" last="Nooh">Randa Nooh</name>
<name sortKey="Sakthivel, Senthilkumar K" sort="Sakthivel, Senthilkumar K" uniqKey="Sakthivel S" first="Senthilkumar K." last="Sakthivel">Senthilkumar K. Sakthivel</name>
<name sortKey="Srinivasamoorthy, Ganesh" sort="Srinivasamoorthy, Ganesh" uniqKey="Srinivasamoorthy G" first="Ganesh" last="Srinivasamoorthy">Ganesh Srinivasamoorthy</name>
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</record>

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