Serveur d'exploration MERS

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Increase in Middle East Respiratory Syndrome-Coronavirus Cases in Saudi Arabia Linked to Hospital Outbreak With Continued Circulation of Recombinant Virus, July 1–August 31, 2015

Identifieur interne : 001206 ( Main/Exploration ); précédent : 001205; suivant : 001207

Increase in Middle East Respiratory Syndrome-Coronavirus Cases in Saudi Arabia Linked to Hospital Outbreak With Continued Circulation of Recombinant Virus, July 1–August 31, 2015

Auteurs : Abdullah M. Assiri [Arabie saoudite] ; Holly M. Biggs [Géorgie (pays)] ; Glen R. Abedi [Géorgie (pays)] ; Xiaoyan Lu [Géorgie (pays)] ; Abdulaziz Bin Saeed [Arabie saoudite] ; Osman Abdalla [Arabie saoudite] ; Mutaz Mohammed [Arabie saoudite] ; Hail M. Al-Abdely [Arabie saoudite] ; Homoud S. Algarni [Arabie saoudite] ; Raafat F. Alhakeem [Arabie saoudite] ; Malak M. Almasri [Arabie saoudite] ; Ali A. Alsharef [Arabie saoudite] ; Randa Nooh [Arabie saoudite] ; Dean D. Erdman [Géorgie (pays)] ; Susan I. Gerber [Géorgie (pays)] ; John T. Watson [Géorgie (pays)]

Source :

RBID : PMC:5047409

Abstract

Abstract

During July–August 2015, the number of cases of Middle East respiratory syndrome (MERS) reported from Saudi Arabia increased dramatically. We reviewed the 143 confirmed cases from this period and classified each based upon likely transmission source. We found that the surge in cases resulted predominantly (90%) from secondary transmission largely attributable to an outbreak at a single healthcare facility in Riyadh. Genome sequencing of MERS coronavirus from 6 cases demonstrated continued circulation of the recently described recombinant virus. A single unique frameshift deletion in open reading frame 5 was detected in the viral sequence from 1 case.


Url:
DOI: 10.1093/ofid/ofw165
PubMed: 27704019
PubMed Central: 5047409


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

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<title xml:lang="en">Increase in Middle East Respiratory Syndrome-Coronavirus Cases in Saudi Arabia Linked to Hospital Outbreak With Continued Circulation of Recombinant Virus, July 1–August 31, 2015</title>
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<name sortKey="Assiri, Abdullah M" sort="Assiri, Abdullah M" uniqKey="Assiri A" first="Abdullah M." last="Assiri">Abdullah M. Assiri</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
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<country xml:lang="fr">Arabie saoudite</country>
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<name sortKey="Biggs, Holly M" sort="Biggs, Holly M" uniqKey="Biggs H" first="Holly M." last="Biggs">Holly M. Biggs</name>
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<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
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<country xml:lang="fr">Géorgie (pays)</country>
<wicri:regionArea>Atlanta</wicri:regionArea>
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<name sortKey="Abedi, Glen R" sort="Abedi, Glen R" uniqKey="Abedi G" first="Glen R." last="Abedi">Glen R. Abedi</name>
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<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
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<addr-line>Atlanta, Georgia</addr-line>
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<name sortKey="Lu, Xiaoyan" sort="Lu, Xiaoyan" uniqKey="Lu X" first="Xiaoyan" last="Lu">Xiaoyan Lu</name>
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<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
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<name sortKey="Bin Saeed, Abdulaziz" sort="Bin Saeed, Abdulaziz" uniqKey="Bin Saeed A" first="Abdulaziz" last="Bin Saeed">Abdulaziz Bin Saeed</name>
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<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
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<addr-line>Department of Family and Community Medicine</addr-line>
,
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,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
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<name sortKey="Abdalla, Osman" sort="Abdalla, Osman" uniqKey="Abdalla O" first="Osman" last="Abdalla">Osman Abdalla</name>
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<name sortKey="Mohammed, Mutaz" sort="Mohammed, Mutaz" uniqKey="Mohammed M" first="Mutaz" last="Mohammed">Mutaz Mohammed</name>
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<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
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<country xml:lang="fr">Arabie saoudite</country>
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<name sortKey="Al Abdely, Hail M" sort="Al Abdely, Hail M" uniqKey="Al Abdely H" first="Hail M." last="Al-Abdely">Hail M. Al-Abdely</name>
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<name sortKey="Algarni, Homoud S" sort="Algarni, Homoud S" uniqKey="Algarni H" first="Homoud S." last="Algarni">Homoud S. Algarni</name>
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<name sortKey="Alhakeem, Raafat F" sort="Alhakeem, Raafat F" uniqKey="Alhakeem R" first="Raafat F." last="Alhakeem">Raafat F. Alhakeem</name>
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<name sortKey="Almasri, Malak M" sort="Almasri, Malak M" uniqKey="Almasri M" first="Malak M." last="Almasri">Malak M. Almasri</name>
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,
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,
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<name sortKey="Alsharef, Ali A" sort="Alsharef, Ali A" uniqKey="Alsharef A" first="Ali A." last="Alsharef">Ali A. Alsharef</name>
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,
<addr-line>Riyadh</addr-line>
,
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<country xml:lang="fr">Arabie saoudite</country>
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<name sortKey="Nooh, Randa" sort="Nooh, Randa" uniqKey="Nooh R" first="Randa" last="Nooh">Randa Nooh</name>
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,
<addr-line>Riyadh</addr-line>
,
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<name sortKey="Erdman, Dean D" sort="Erdman, Dean D" uniqKey="Erdman D" first="Dean D." last="Erdman">Dean D. Erdman</name>
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,
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,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
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<name sortKey="Gerber, Susan I" sort="Gerber, Susan I" uniqKey="Gerber S" first="Susan I." last="Gerber">Susan I. Gerber</name>
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<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
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<wicri:regionArea>Atlanta</wicri:regionArea>
</affiliation>
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<name sortKey="Watson, John T" sort="Watson, John T" uniqKey="Watson J" first="John T." last="Watson">John T. Watson</name>
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,
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,
<addr-line>Atlanta, Georgia</addr-line>
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<title xml:lang="en" level="a" type="main">Increase in Middle East Respiratory Syndrome-Coronavirus Cases in Saudi Arabia Linked to Hospital Outbreak With Continued Circulation of Recombinant Virus, July 1–August 31, 2015</title>
<author>
<name sortKey="Assiri, Abdullah M" sort="Assiri, Abdullah M" uniqKey="Assiri A" first="Abdullah M." last="Assiri">Abdullah M. Assiri</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
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<name sortKey="Biggs, Holly M" sort="Biggs, Holly M" uniqKey="Biggs H" first="Holly M." last="Biggs">Holly M. Biggs</name>
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<nlm:aff id="af2">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
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<name sortKey="Abedi, Glen R" sort="Abedi, Glen R" uniqKey="Abedi G" first="Glen R." last="Abedi">Glen R. Abedi</name>
<affiliation wicri:level="1">
<nlm:aff id="af2">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
<wicri:regionArea>Atlanta</wicri:regionArea>
</affiliation>
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<author>
<name sortKey="Lu, Xiaoyan" sort="Lu, Xiaoyan" uniqKey="Lu X" first="Xiaoyan" last="Lu">Xiaoyan Lu</name>
<affiliation wicri:level="1">
<nlm:aff id="af2">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
<wicri:regionArea>Atlanta</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Bin Saeed, Abdulaziz" sort="Bin Saeed, Abdulaziz" uniqKey="Bin Saeed A" first="Abdulaziz" last="Bin Saeed">Abdulaziz Bin Saeed</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="af3">
<addr-line>Department of Family and Community Medicine</addr-line>
,
<institution>King Saud University</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
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<name sortKey="Abdalla, Osman" sort="Abdalla, Osman" uniqKey="Abdalla O" first="Osman" last="Abdalla">Osman Abdalla</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Mohammed, Mutaz" sort="Mohammed, Mutaz" uniqKey="Mohammed M" first="Mutaz" last="Mohammed">Mutaz Mohammed</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
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<author>
<name sortKey="Al Abdely, Hail M" sort="Al Abdely, Hail M" uniqKey="Al Abdely H" first="Hail M." last="Al-Abdely">Hail M. Al-Abdely</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Algarni, Homoud S" sort="Algarni, Homoud S" uniqKey="Algarni H" first="Homoud S." last="Algarni">Homoud S. Algarni</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Alhakeem, Raafat F" sort="Alhakeem, Raafat F" uniqKey="Alhakeem R" first="Raafat F." last="Alhakeem">Raafat F. Alhakeem</name>
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<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Almasri, Malak M" sort="Almasri, Malak M" uniqKey="Almasri M" first="Malak M." last="Almasri">Malak M. Almasri</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Alsharef, Ali A" sort="Alsharef, Ali A" uniqKey="Alsharef A" first="Ali A." last="Alsharef">Ali A. Alsharef</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Nooh, Randa" sort="Nooh, Randa" uniqKey="Nooh R" first="Randa" last="Nooh">Randa Nooh</name>
<affiliation wicri:level="1">
<nlm:aff id="af1">
<institution>Ministry of Health</institution>
,
<addr-line>Riyadh</addr-line>
,
<country>Saudi Arabia</country>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Erdman, Dean D" sort="Erdman, Dean D" uniqKey="Erdman D" first="Dean D." last="Erdman">Dean D. Erdman</name>
<affiliation wicri:level="1">
<nlm:aff id="af2">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
<wicri:regionArea>Atlanta</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Gerber, Susan I" sort="Gerber, Susan I" uniqKey="Gerber S" first="Susan I." last="Gerber">Susan I. Gerber</name>
<affiliation wicri:level="1">
<nlm:aff id="af2">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
<wicri:regionArea>Atlanta</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Watson, John T" sort="Watson, John T" uniqKey="Watson J" first="John T." last="Watson">John T. Watson</name>
<affiliation wicri:level="1">
<nlm:aff id="af2">
<addr-line>Division of Viral Diseases, National Center for Immunization and Respiratory Diseases</addr-line>
,
<institution>Centers for Disease Control and Prevention</institution>
,
<addr-line>Atlanta, Georgia</addr-line>
</nlm:aff>
<country xml:lang="fr">Géorgie (pays)</country>
<wicri:regionArea>Atlanta</wicri:regionArea>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Open Forum Infectious Diseases</title>
<idno type="eISSN">2328-8957</idno>
<imprint>
<date when="2016">2016</date>
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<div type="abstract" xml:lang="en">
<title>Abstract</title>
<p>During July–August 2015, the number of cases of Middle East respiratory syndrome (MERS) reported from Saudi Arabia increased dramatically. We reviewed the 143 confirmed cases from this period and classified each based upon likely transmission source. We found that the surge in cases resulted predominantly (90%) from secondary transmission largely attributable to an outbreak at a single healthcare facility in Riyadh. Genome sequencing of MERS coronavirus from 6 cases demonstrated continued circulation of the recently described recombinant virus. A single unique frameshift deletion in open reading frame 5 was detected in the viral sequence from 1 case.</p>
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<name sortKey="Alraddadi, Bm" uniqKey="Alraddadi B">BM Alraddadi</name>
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<name sortKey="Watson, Jt" uniqKey="Watson J">JT Watson</name>
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<name sortKey="Almarashi, A" uniqKey="Almarashi A">A Almarashi</name>
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<name sortKey="Oboho, Ik" uniqKey="Oboho I">IK Oboho</name>
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<name sortKey="Al Asmari, Am" uniqKey="Al Asmari A">AM Al-Asmari</name>
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<name sortKey="Meyer, B" uniqKey="Meyer B">B Meyer</name>
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<name sortKey="Muller, Ma" uniqKey="Muller M">MA Muller</name>
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<name sortKey="Ahmed, Mm" uniqKey="Ahmed M">MM Ahmed</name>
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<name sortKey="Shi, W" uniqKey="Shi W">W Shi</name>
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<name sortKey="Van Boheemen, S" uniqKey="Van Boheemen S">S van Boheemen</name>
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<affiliations>
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<li>Arabie saoudite</li>
<li>Géorgie (pays)</li>
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<name sortKey="Al Abdely, Hail M" sort="Al Abdely, Hail M" uniqKey="Al Abdely H" first="Hail M." last="Al-Abdely">Hail M. Al-Abdely</name>
<name sortKey="Algarni, Homoud S" sort="Algarni, Homoud S" uniqKey="Algarni H" first="Homoud S." last="Algarni">Homoud S. Algarni</name>
<name sortKey="Alhakeem, Raafat F" sort="Alhakeem, Raafat F" uniqKey="Alhakeem R" first="Raafat F." last="Alhakeem">Raafat F. Alhakeem</name>
<name sortKey="Almasri, Malak M" sort="Almasri, Malak M" uniqKey="Almasri M" first="Malak M." last="Almasri">Malak M. Almasri</name>
<name sortKey="Alsharef, Ali A" sort="Alsharef, Ali A" uniqKey="Alsharef A" first="Ali A." last="Alsharef">Ali A. Alsharef</name>
<name sortKey="Bin Saeed, Abdulaziz" sort="Bin Saeed, Abdulaziz" uniqKey="Bin Saeed A" first="Abdulaziz" last="Bin Saeed">Abdulaziz Bin Saeed</name>
<name sortKey="Bin Saeed, Abdulaziz" sort="Bin Saeed, Abdulaziz" uniqKey="Bin Saeed A" first="Abdulaziz" last="Bin Saeed">Abdulaziz Bin Saeed</name>
<name sortKey="Mohammed, Mutaz" sort="Mohammed, Mutaz" uniqKey="Mohammed M" first="Mutaz" last="Mohammed">Mutaz Mohammed</name>
<name sortKey="Nooh, Randa" sort="Nooh, Randa" uniqKey="Nooh R" first="Randa" last="Nooh">Randa Nooh</name>
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<name sortKey="Biggs, Holly M" sort="Biggs, Holly M" uniqKey="Biggs H" first="Holly M." last="Biggs">Holly M. Biggs</name>
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<name sortKey="Erdman, Dean D" sort="Erdman, Dean D" uniqKey="Erdman D" first="Dean D." last="Erdman">Dean D. Erdman</name>
<name sortKey="Gerber, Susan I" sort="Gerber, Susan I" uniqKey="Gerber S" first="Susan I." last="Gerber">Susan I. Gerber</name>
<name sortKey="Lu, Xiaoyan" sort="Lu, Xiaoyan" uniqKey="Lu X" first="Xiaoyan" last="Lu">Xiaoyan Lu</name>
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