k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank
Identifieur interne : 000A97 ( Main/Exploration ); précédent : 000A96; suivant : 000A98k-mer Similarity, Networks of Microbial Genomes, and Taxonomic Rank
Auteurs : Guillaume Bernard [Australie] ; Paul Greenfield [Australie] ; Mark A. Ragan [Australie] ; Cheong Xin Chan [Australie]Source :
- mSystems [ 2379-5077 ] ; 2018.
Abstract
Genome evolution of microbes involves parent-to-offspring descent, and lateral genetic transfer that convolutes the phylogenomic signal. This study investigated phylogenomic signals among thousands of microbial genomes based on short subsequences without using multiple-sequence alignment. The signal from ribosomal RNAs is strong across all taxa, and the signal of plasmids is strong only in closely related groups, particularly
Url:
DOI: 10.1128/mSystems.00257-18
PubMed: 30505941
PubMed Central: 6247013
Affiliations:
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<front><div type="abstract" xml:lang="en"><p>Genome evolution of microbes involves parent-to-offspring descent, and lateral genetic transfer that convolutes the phylogenomic signal. This study investigated phylogenomic signals among thousands of microbial genomes based on short subsequences without using multiple-sequence alignment. The signal from ribosomal RNAs is strong across all taxa, and the signal of plasmids is strong only in closely related groups, particularly <italic>Proteobacteria</italic>
. However, the signal from other chromosomal regions (∼99% of the genomes) is remarkably restricted in breadth. The similarity of subsequences is found to correlate with taxonomic rank and informs on conserved and differential core functions relative to niche specialization and evolutionary diversification of microbes. These results provide a comprehensive, alignment-free view of microbial genome evolution as a network, beyond a tree-like structure.</p>
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<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="De Bary, A" uniqKey="De Bary A">A de Bary</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Woese, Cr" uniqKey="Woese C">CR Woese</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bartlett, Jms" uniqKey="Bartlett J">JMS Bartlett</name>
</author>
<author><name sortKey="Stirling, D" uniqKey="Stirling D">D Stirling</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Brown, Jr" uniqKey="Brown J">JR Brown</name>
</author>
<author><name sortKey="Masuchi, Y" uniqKey="Masuchi Y">Y Masuchi</name>
</author>
<author><name sortKey="Robb, Ft" uniqKey="Robb F">FT Robb</name>
</author>
<author><name sortKey="Doolittle, Wf" uniqKey="Doolittle W">WF Doolittle</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hug, La" uniqKey="Hug L">LA Hug</name>
</author>
<author><name sortKey="Baker, Bj" uniqKey="Baker B">BJ Baker</name>
</author>
<author><name sortKey="Anantharaman, K" uniqKey="Anantharaman K">K Anantharaman</name>
</author>
<author><name sortKey="Brown, Ct" uniqKey="Brown C">CT Brown</name>
</author>
<author><name sortKey="Probst, Aj" uniqKey="Probst A">AJ Probst</name>
</author>
<author><name sortKey="Castelle, Cj" uniqKey="Castelle C">CJ Castelle</name>
</author>
<author><name sortKey="Butterfield, Cn" uniqKey="Butterfield C">CN Butterfield</name>
</author>
<author><name sortKey="Hernsdorf, Aw" uniqKey="Hernsdorf A">AW Hernsdorf</name>
</author>
<author><name sortKey="Amano, Y" uniqKey="Amano Y">Y Amano</name>
</author>
<author><name sortKey="Ise, K" uniqKey="Ise K">K Ise</name>
</author>
<author><name sortKey="Suzuki, Y" uniqKey="Suzuki Y">Y Suzuki</name>
</author>
<author><name sortKey="Dudek, N" uniqKey="Dudek N">N Dudek</name>
</author>
<author><name sortKey="Relman, Da" uniqKey="Relman D">DA Relman</name>
</author>
<author><name sortKey="Finstad, Km" uniqKey="Finstad K">KM Finstad</name>
</author>
<author><name sortKey="Amundson, R" uniqKey="Amundson R">R Amundson</name>
</author>
<author><name sortKey="Thomas, Bc" uniqKey="Thomas B">BC Thomas</name>
</author>
<author><name sortKey="Banfield, Jf" uniqKey="Banfield J">JF Banfield</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Forterre, P" uniqKey="Forterre P">P Forterre</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kunin, V" uniqKey="Kunin V">V Kunin</name>
</author>
<author><name sortKey="Goldovsky, L" uniqKey="Goldovsky L">L Goldovsky</name>
</author>
<author><name sortKey="Darzentas, N" uniqKey="Darzentas N">N Darzentas</name>
</author>
<author><name sortKey="Ouzounis, Ca" uniqKey="Ouzounis C">CA Ouzounis</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rivera, Mc" uniqKey="Rivera M">MC Rivera</name>
</author>
<author><name sortKey="Lake, Ja" uniqKey="Lake J">JA Lake</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lake, Ja" uniqKey="Lake J">JA Lake</name>
</author>
<author><name sortKey="Servin, Ja" uniqKey="Servin J">JA Servin</name>
</author>
<author><name sortKey="Herbold, Cw" uniqKey="Herbold C">CW Herbold</name>
</author>
<author><name sortKey="Skophammer, Rg" uniqKey="Skophammer R">RG Skophammer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fournier, Gp" uniqKey="Fournier G">GP Fournier</name>
</author>
<author><name sortKey="Huang, J" uniqKey="Huang J">J Huang</name>
</author>
<author><name sortKey="Gogarten, Jp" uniqKey="Gogarten J">JP Gogarten</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cong, Y" uniqKey="Cong Y">Y Cong</name>
</author>
<author><name sortKey="Chan, Yb" uniqKey="Chan Y">YB Chan</name>
</author>
<author><name sortKey="Phillips, Ca" uniqKey="Phillips C">CA Phillips</name>
</author>
<author><name sortKey="Langston, Ma" uniqKey="Langston M">MA Langston</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Doolittle, Wf" uniqKey="Doolittle W">WF Doolittle</name>
</author>
<author><name sortKey="Bapteste, E" uniqKey="Bapteste E">E Bapteste</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dagan, T" uniqKey="Dagan T">T Dagan</name>
</author>
<author><name sortKey="Martin, W" uniqKey="Martin W">W Martin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Beiko, Rg" uniqKey="Beiko R">RG Beiko</name>
</author>
<author><name sortKey="Harlow, Tj" uniqKey="Harlow T">TJ Harlow</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bernard, G" uniqKey="Bernard G">G Bernard</name>
</author>
<author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bernard, G" uniqKey="Bernard G">G Bernard</name>
</author>
<author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
<author><name sortKey="Chan, Yb" uniqKey="Chan Y">YB Chan</name>
</author>
<author><name sortKey="Chua, Xy" uniqKey="Chua X">XY Chua</name>
</author>
<author><name sortKey="Cong, Y" uniqKey="Cong Y">Y Cong</name>
</author>
<author><name sortKey="Hogan, Jm" uniqKey="Hogan J">JM Hogan</name>
</author>
<author><name sortKey="Maetschke, Sr" uniqKey="Maetschke S">SR Maetschke</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ren, J" uniqKey="Ren J">J Ren</name>
</author>
<author><name sortKey="Bai, X" uniqKey="Bai X">X Bai</name>
</author>
<author><name sortKey="Lu, Yy" uniqKey="Lu Y">YY Lu</name>
</author>
<author><name sortKey="Tang, K" uniqKey="Tang K">K Tang</name>
</author>
<author><name sortKey="Wang, Y" uniqKey="Wang Y">Y Wang</name>
</author>
<author><name sortKey="Reinert, G" uniqKey="Reinert G">G Reinert</name>
</author>
<author><name sortKey="Sun, F" uniqKey="Sun F">F Sun</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zielezinski, A" uniqKey="Zielezinski A">A Zielezinski</name>
</author>
<author><name sortKey="Vinga, S" uniqKey="Vinga S">S Vinga</name>
</author>
<author><name sortKey="Almeida, J" uniqKey="Almeida J">J Almeida</name>
</author>
<author><name sortKey="Karlowski, Wm" uniqKey="Karlowski W">WM Karlowski</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Saitou, N" uniqKey="Saitou N">N Saitou</name>
</author>
<author><name sortKey="Nei, M" uniqKey="Nei M">M Nei</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ali, W" uniqKey="Ali W">W Ali</name>
</author>
<author><name sortKey="Rito, T" uniqKey="Rito T">T Rito</name>
</author>
<author><name sortKey="Reinert, G" uniqKey="Reinert G">G Reinert</name>
</author>
<author><name sortKey="Sun, F" uniqKey="Sun F">F Sun</name>
</author>
<author><name sortKey="Deane, Cm" uniqKey="Deane C">CM Deane</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cong, Y" uniqKey="Cong Y">Y Cong</name>
</author>
<author><name sortKey="Chan, Yb" uniqKey="Chan Y">YB Chan</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cong, Y" uniqKey="Cong Y">Y Cong</name>
</author>
<author><name sortKey="Chan, Yb" uniqKey="Chan Y">YB Chan</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Posada, D" uniqKey="Posada D">D Posada</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
<author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fox, Ge" uniqKey="Fox G">GE Fox</name>
</author>
<author><name sortKey="Pechman, Kr" uniqKey="Pechman K">KR Pechman</name>
</author>
<author><name sortKey="Woese, Cr" uniqKey="Woese C">CR Woese</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Woese, Cr" uniqKey="Woese C">CR Woese</name>
</author>
<author><name sortKey="Fox, Ge" uniqKey="Fox G">GE Fox</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fox, Ge" uniqKey="Fox G">GE Fox</name>
</author>
<author><name sortKey="Stackebrandt, E" uniqKey="Stackebrandt E">E Stackebrandt</name>
</author>
<author><name sortKey="Hespell, Rb" uniqKey="Hespell R">RB Hespell</name>
</author>
<author><name sortKey="Gibson, J" uniqKey="Gibson J">J Gibson</name>
</author>
<author><name sortKey="Maniloff, J" uniqKey="Maniloff J">J Maniloff</name>
</author>
<author><name sortKey="Dyer, Ta" uniqKey="Dyer T">TA Dyer</name>
</author>
<author><name sortKey="Wolfe, Rs" uniqKey="Wolfe R">RS Wolfe</name>
</author>
<author><name sortKey="Balch, We" uniqKey="Balch W">WE Balch</name>
</author>
<author><name sortKey="Tanner, Rs" uniqKey="Tanner R">RS Tanner</name>
</author>
<author><name sortKey="Magrum, Lj" uniqKey="Magrum L">LJ Magrum</name>
</author>
<author><name sortKey="Zablen, Lb" uniqKey="Zablen L">LB Zablen</name>
</author>
<author><name sortKey="Blakemore, R" uniqKey="Blakemore R">R Blakemore</name>
</author>
<author><name sortKey="Gupta, R" uniqKey="Gupta R">R Gupta</name>
</author>
<author><name sortKey="Bonen, L" uniqKey="Bonen L">L Bonen</name>
</author>
<author><name sortKey="Lewis, Bj" uniqKey="Lewis B">BJ Lewis</name>
</author>
<author><name sortKey="Stahl, Da" uniqKey="Stahl D">DA Stahl</name>
</author>
<author><name sortKey="Luehrsen, Kr" uniqKey="Luehrsen K">KR Luehrsen</name>
</author>
<author><name sortKey="Chen, Kn" uniqKey="Chen K">KN Chen</name>
</author>
<author><name sortKey="Woese, Cr" uniqKey="Woese C">CR Woese</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Yi, H" uniqKey="Yi H">H Yi</name>
</author>
<author><name sortKey="Jin, L" uniqKey="Jin L">L Jin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bernard, G" uniqKey="Bernard G">G Bernard</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
<author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lu, Yy" uniqKey="Lu Y">YY Lu</name>
</author>
<author><name sortKey="Tang, K" uniqKey="Tang K">K Tang</name>
</author>
<author><name sortKey="Ren, J" uniqKey="Ren J">J Ren</name>
</author>
<author><name sortKey="Fuhrman, Ja" uniqKey="Fuhrman J">JA Fuhrman</name>
</author>
<author><name sortKey="Waterman, Ms" uniqKey="Waterman M">MS Waterman</name>
</author>
<author><name sortKey="Sun, F" uniqKey="Sun F">F Sun</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Leimeister, Ca" uniqKey="Leimeister C">CA Leimeister</name>
</author>
<author><name sortKey="Boden, M" uniqKey="Boden M">M Boden</name>
</author>
<author><name sortKey="Horwege, S" uniqKey="Horwege S">S Horwege</name>
</author>
<author><name sortKey="Lindner, S" uniqKey="Lindner S">S Lindner</name>
</author>
<author><name sortKey="Morgenstern, B" uniqKey="Morgenstern B">B Morgenstern</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
<author><name sortKey="Bernard, G" uniqKey="Bernard G">G Bernard</name>
</author>
<author><name sortKey="Poirion, O" uniqKey="Poirion O">O Poirion</name>
</author>
<author><name sortKey="Hogan, Jm" uniqKey="Hogan J">JM Hogan</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wan, L" uniqKey="Wan L">L Wan</name>
</author>
<author><name sortKey="Reinert, G" uniqKey="Reinert G">G Reinert</name>
</author>
<author><name sortKey="Sun, F" uniqKey="Sun F">F Sun</name>
</author>
<author><name sortKey="Waterman, Ms" uniqKey="Waterman M">MS Waterman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Reinert, G" uniqKey="Reinert G">G Reinert</name>
</author>
<author><name sortKey="Chew, D" uniqKey="Chew D">D Chew</name>
</author>
<author><name sortKey="Sun, F" uniqKey="Sun F">F Sun</name>
</author>
<author><name sortKey="Waterman, Ms" uniqKey="Waterman M">MS Waterman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Skippington, E" uniqKey="Skippington E">E Skippington</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Greenfield, P" uniqKey="Greenfield P">P Greenfield</name>
</author>
<author><name sortKey="Roehm, U" uniqKey="Roehm U">U Roehm</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Jain, A" uniqKey="Jain A">A Jain</name>
</author>
<author><name sortKey="Srivastava, P" uniqKey="Srivastava P">P Srivastava</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shintani, M" uniqKey="Shintani M">M Shintani</name>
</author>
<author><name sortKey="Sanchez, Zk" uniqKey="Sanchez Z">ZK Sanchez</name>
</author>
<author><name sortKey="Kimbara, K" uniqKey="Kimbara K">K Kimbara</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Harrison, E" uniqKey="Harrison E">E Harrison</name>
</author>
<author><name sortKey="Guymer, D" uniqKey="Guymer D">D Guymer</name>
</author>
<author><name sortKey="Spiers, Aj" uniqKey="Spiers A">AJ Spiers</name>
</author>
<author><name sortKey="Paterson, S" uniqKey="Paterson S">S Paterson</name>
</author>
<author><name sortKey="Brockhurst, Ma" uniqKey="Brockhurst M">MA Brockhurst</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fondi, M" uniqKey="Fondi M">M Fondi</name>
</author>
<author><name sortKey="Fani, R" uniqKey="Fani R">R Fani</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lefeuvre, P" uniqKey="Lefeuvre P">P Lefeuvre</name>
</author>
<author><name sortKey="Cellier, G" uniqKey="Cellier G">G Cellier</name>
</author>
<author><name sortKey="Remenant, B" uniqKey="Remenant B">B Remenant</name>
</author>
<author><name sortKey="Chiroleu, F" uniqKey="Chiroleu F">F Chiroleu</name>
</author>
<author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tatusov, Rl" uniqKey="Tatusov R">RL Tatusov</name>
</author>
<author><name sortKey="Galperin, My" uniqKey="Galperin M">MY Galperin</name>
</author>
<author><name sortKey="Natale, Da" uniqKey="Natale D">DA Natale</name>
</author>
<author><name sortKey="Koonin, Ev" uniqKey="Koonin E">EV Koonin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Benjamini, Y" uniqKey="Benjamini Y">Y Benjamini</name>
</author>
<author><name sortKey="Hochberg, Y" uniqKey="Hochberg Y">Y Hochberg</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Soucy, Sm" uniqKey="Soucy S">SM Soucy</name>
</author>
<author><name sortKey="Huang, J" uniqKey="Huang J">J Huang</name>
</author>
<author><name sortKey="Gogarten, Jp" uniqKey="Gogarten J">JP Gogarten</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chan, Cx" uniqKey="Chan C">CX Chan</name>
</author>
<author><name sortKey="Beiko, Rg" uniqKey="Beiko R">RG Beiko</name>
</author>
<author><name sortKey="Darling, Ae" uniqKey="Darling A">AE Darling</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lerat, E" uniqKey="Lerat E">E Lerat</name>
</author>
<author><name sortKey="Daubin, V" uniqKey="Daubin V">V Daubin</name>
</author>
<author><name sortKey="Moran, Na" uniqKey="Moran N">NA Moran</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Daubin, V" uniqKey="Daubin V">V Daubin</name>
</author>
<author><name sortKey="Gouy, M" uniqKey="Gouy M">M Gouy</name>
</author>
<author><name sortKey="Perriere, G" uniqKey="Perriere G">G Perrière</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Dagan, T" uniqKey="Dagan T">T Dagan</name>
</author>
<author><name sortKey="Martin, W" uniqKey="Martin W">W Martin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Pace, Nr" uniqKey="Pace N">NR Pace</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kloesges, T" uniqKey="Kloesges T">T Kloesges</name>
</author>
<author><name sortKey="Popa, O" uniqKey="Popa O">O Popa</name>
</author>
<author><name sortKey="Martin, W" uniqKey="Martin W">W Martin</name>
</author>
<author><name sortKey="Dagan, T" uniqKey="Dagan T">T Dagan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Olsen, Gj" uniqKey="Olsen G">GJ Olsen</name>
</author>
<author><name sortKey="Woese, Cr" uniqKey="Woese C">CR Woese</name>
</author>
<author><name sortKey="Overbeek, R" uniqKey="Overbeek R">R Overbeek</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Stanier, Ry" uniqKey="Stanier R">RY Stanier</name>
</author>
<author><name sortKey="Van Niel, Cb" uniqKey="Van Niel C">CB Van Niel</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wayne, Lg" uniqKey="Wayne L">LG Wayne</name>
</author>
<author><name sortKey="Brenner, Dj" uniqKey="Brenner D">DJ Brenner</name>
</author>
<author><name sortKey="Colwell, Rr" uniqKey="Colwell R">RR Colwell</name>
</author>
<author><name sortKey="Grimont, Pad" uniqKey="Grimont P">PAD Grimont</name>
</author>
<author><name sortKey="Kandler, O" uniqKey="Kandler O">O Kandler</name>
</author>
<author><name sortKey="Krichevsky, Mi" uniqKey="Krichevsky M">MI Krichevsky</name>
</author>
<author><name sortKey="Moore, Lh" uniqKey="Moore L">LH Moore</name>
</author>
<author><name sortKey="Moore, Wec" uniqKey="Moore W">WEC Moore</name>
</author>
<author><name sortKey="Murray, Rge" uniqKey="Murray R">RGE Murray</name>
</author>
<author><name sortKey="Stackebrandt, E" uniqKey="Stackebrandt E">E Stackebrandt</name>
</author>
<author><name sortKey="Starr, Mp" uniqKey="Starr M">MP Starr</name>
</author>
<author><name sortKey="Truper, Hg" uniqKey="Truper H">HG Truper</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Trust, Tj" uniqKey="Trust T">TJ Trust</name>
</author>
<author><name sortKey="Logan, Sm" uniqKey="Logan S">SM Logan</name>
</author>
<author><name sortKey="Gustafson, Ce" uniqKey="Gustafson C">CE Gustafson</name>
</author>
<author><name sortKey="Romaniuk, Pj" uniqKey="Romaniuk P">PJ Romaniuk</name>
</author>
<author><name sortKey="Kim, Nw" uniqKey="Kim N">NW Kim</name>
</author>
<author><name sortKey="Chan, Vl" uniqKey="Chan V">VL Chan</name>
</author>
<author><name sortKey="Ragan, Ma" uniqKey="Ragan M">MA Ragan</name>
</author>
<author><name sortKey="Guerry, P" uniqKey="Guerry P">P Guerry</name>
</author>
<author><name sortKey="Gutell, Rr" uniqKey="Gutell R">RR Gutell</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Skennerton, Ct" uniqKey="Skennerton C">CT Skennerton</name>
</author>
<author><name sortKey="Haroon, Mf" uniqKey="Haroon M">MF Haroon</name>
</author>
<author><name sortKey="Briegel, A" uniqKey="Briegel A">A Briegel</name>
</author>
<author><name sortKey="Shi, J" uniqKey="Shi J">J Shi</name>
</author>
<author><name sortKey="Jensen, Gj" uniqKey="Jensen G">GJ Jensen</name>
</author>
<author><name sortKey="Tyson, Gw" uniqKey="Tyson G">GW Tyson</name>
</author>
<author><name sortKey="Orphan, Vj" uniqKey="Orphan V">VJ Orphan</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Powell, S" uniqKey="Powell S">S Powell</name>
</author>
<author><name sortKey="Szklarczyk, D" uniqKey="Szklarczyk D">D Szklarczyk</name>
</author>
<author><name sortKey="Trachana, K" uniqKey="Trachana K">K Trachana</name>
</author>
<author><name sortKey="Roth, A" uniqKey="Roth A">A Roth</name>
</author>
<author><name sortKey="Kuhn, M" uniqKey="Kuhn M">M Kuhn</name>
</author>
<author><name sortKey="Muller, J" uniqKey="Muller J">J Muller</name>
</author>
<author><name sortKey="Arnold, R" uniqKey="Arnold R">R Arnold</name>
</author>
<author><name sortKey="Rattei, T" uniqKey="Rattei T">T Rattei</name>
</author>
<author><name sortKey="Letunic, I" uniqKey="Letunic I">I Letunic</name>
</author>
<author><name sortKey="Doerks, T" uniqKey="Doerks T">T Doerks</name>
</author>
<author><name sortKey="Jensen, Lj" uniqKey="Jensen L">LJ Jensen</name>
</author>
<author><name sortKey="Von Mering, C" uniqKey="Von Mering C">C von Mering</name>
</author>
<author><name sortKey="Bork, P" uniqKey="Bork P">P Bork</name>
</author>
</analytic>
</biblStruct>
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<affiliations><list><country><li>Australie</li>
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<tree><country name="Australie"><noRegion><name sortKey="Bernard, Guillaume" sort="Bernard, Guillaume" uniqKey="Bernard G" first="Guillaume" last="Bernard">Guillaume Bernard</name>
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