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Neotropical Bats from Costa Rica harbour Diverse Coronaviruses

Identifieur interne : 000B03 ( Istex/Corpus ); précédent : 000B02; suivant : 000B04

Neotropical Bats from Costa Rica harbour Diverse Coronaviruses

Auteurs : A. Moreira-Soto ; L. Taylor-Castillo ; N. Vargas-Vargas ; B. Rodríguez-Herrera ; C. Jiménez ; E. Corrales-Aguilar

Source :

RBID : ISTEX:C05B446F5817316D2918F2BA9A5A28A301D66BF6

Abstract

Bats are hosts of diverse coronaviruses (CoVs) known to potentially cross the host–species barrier. For analysing coronavirus diversity in a bat species‐rich country, a total of 421 anal swabs/faecal samples from Costa Rican bats were screened for CoV RNA‐dependent RNA polymerase (RdRp) gene sequences by a pancoronavirus PCR. Six families, 24 genera and 41 species of bats were analysed. The detection rate for CoV was 1%. Individuals (n = 4) from four different species of frugivorous (Artibeus jamaicensis, Carollia perspicillata and Carollia castanea) and nectivorous (Glossophaga soricina) bats were positive for coronavirus‐derived nucleic acids. Analysis of 440 nt. RdRp sequences allocated all Costa Rican bat CoVs to the α‐CoV group. Several CoVs sequences clustered near previously described CoVs from the same species of bat, but were phylogenetically distant from the human CoV sequences identified to date, suggesting no recent spillover events. The Glossophaga soricina CoV sequence is sufficiently dissimilar (26% homology to the closest known bat CoVs) to represent a unique coronavirus not clustering near other CoVs found in the same bat species so far, implying an even higher CoV diversity than previously suspected.

Url:
DOI: 10.1111/zph.12181

Links to Exploration step

ISTEX:C05B446F5817316D2918F2BA9A5A28A301D66BF6

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<p>Bats are hosts of diverse coronaviruses (CoVs) known to potentially cross the host–species barrier. For analysing coronavirus diversity in a bat species‐rich country, a total of 421 anal swabs/faecal samples from Costa Rican bats were screened for CoV
<hi rend="fc">RNA</hi>
‐dependent
<hi rend="fc">RNA</hi>
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<hi rend="fc">PCR</hi>
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 = 4) from four different species of frugivorous (
<hi rend="italic">Artibeus jamaicensis</hi>
,
<hi rend="italic"> Carollia perspicillata</hi>
and
<hi rend="italic">Carollia castanea</hi>
) and nectivorous (
<hi rend="italic">Glossophaga soricina</hi>
) bats were positive for coronavirus‐derived nucleic acids. Analysis of 440 nt. RdRp sequences allocated all Costa Rican bat CoVs to the α‐CoV group. Several CoVs sequences clustered near previously described CoVs from the same species of bat, but were phylogenetically distant from the human CoV sequences identified to date, suggesting no recent spillover events. The
<hi rend="italic">Glossophaga soricina</hi>
CoV sequence is sufficiently dissimilar (26% homology to the closest known bat CoVs) to represent a unique coronavirus not clustering near other CoVs found in the same bat species so far, implying an even higher CoV diversity than previously suspected.</p>
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<line>A. Moreira‐Soto. CIET (Research Center for Tropical Diseases), Virology, Faculty of Microbiology, University of Costa Rica, PO BOX 11501‐2060, San José, Costa Rica. Tel.: +506 2511 8637; Fax: +506 2511 4384; E‐mail:
<email>andres.moreirasoto@ucr.ac.cr</email>
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<b>Table S1.</b>
Bat species collected, tested and listed according to location and CoV positivity.</p>
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<p>Bats are hosts of diverse coronaviruses (CoVs) known to potentially cross the host–species barrier. For analysing coronavirus diversity in a bat species‐rich country, a total of 421 anal swabs/faecal samples from Costa Rican bats were screened for CoV
<fc>RNA</fc>
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 = 4) from four different species of frugivorous (
<i>Artibeus jamaicensis</i>
,
<i> Carollia perspicillata</i>
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<i>Carollia castanea</i>
) and nectivorous (
<i>Glossophaga soricina</i>
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<i>Glossophaga soricina</i>
CoV sequence is sufficiently dissimilar (26% homology to the closest known bat CoVs) to represent a unique coronavirus not clustering near other CoVs found in the same bat species so far, implying an even higher CoV diversity than previously suspected.</p>
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<note numbered="no" xml:id="zph12181-note-0002">Place where the work was carried out: Sampling in Costa Rica. Laboratory work in CIET (Research Center for Tropical Diseases), Virology, Microbiology, University of Costa Rica. Sequencing in Macrogen Inc., Korea and in CIBCM (Research Center in Cellular and Molecular Biology), University of Costa Rica.</note>
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<affiliation>A. Moreira‐Soto. CIET (Research Center for Tropical Diseases), Virology, Faculty of Microbiology, University of Costa Rica, PO BOX 11501‐2060, San José, Costa Rica. Tel.: +506 2511 8637; Fax: +506 2511 4384; E‐mail:</affiliation>
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<abstract>Bats are hosts of diverse coronaviruses (CoVs) known to potentially cross the host–species barrier. For analysing coronavirus diversity in a bat species‐rich country, a total of 421 anal swabs/faecal samples from Costa Rican bats were screened for CoV RNA‐dependent RNA polymerase (RdRp) gene sequences by a pancoronavirus PCR. Six families, 24 genera and 41 species of bats were analysed. The detection rate for CoV was 1%. Individuals (n = 4) from four different species of frugivorous (Artibeus jamaicensis, Carollia perspicillata and Carollia castanea) and nectivorous (Glossophaga soricina) bats were positive for coronavirus‐derived nucleic acids. Analysis of 440 nt. RdRp sequences allocated all Costa Rican bat CoVs to the α‐CoV group. Several CoVs sequences clustered near previously described CoVs from the same species of bat, but were phylogenetically distant from the human CoV sequences identified to date, suggesting no recent spillover events. The Glossophaga soricina CoV sequence is sufficiently dissimilar (26% homology to the closest known bat CoVs) to represent a unique coronavirus not clustering near other CoVs found in the same bat species so far, implying an even higher CoV diversity than previously suspected.</abstract>
<note type="additional physical form">Table S1. Bat species collected, tested and listed according to location and CoV positivity.</note>
<note type="funding">University of Costa Rica Project - No. VI‐803‐B2‐285; </note>
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