MersV1, Istex, Corpus, bibRecord, 000A76

MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices

Identifieur interne : 000A76 ( Istex/Corpus ); précédent : 000A75; suivant : 000A77

MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices

Auteurs : Qing K. Chen ; Gerald Z. Hertz ; Gary D. Stormo

Source :

Bioinformatics [ 1367-4803 ] ; 1995.

RBID : ISTEX:368940217996A628F50D58C690501E9CE9B4E21B

Abstract

The information matrix database (IMD), a database of weight matrices of transcription factor binding sites, is developed. MATRIX SEARCH, a program which can find potential transcription factor binding sites in DNA sequences using the IMD database, is also developed and accompanies the IMD database. MATRIX SEARCH adopts a user interface very similar to that of the SIGNAL SCAN program. MATRIX SEARCH allows the user to search an input sequence with the IMD automatically, to visualize the matrix representations of sites for particular factors, and to retrieve journal citations. The source code for MATRIX SEARCH is in the ‘C’ language, and the program is available for unix platforms.

Url:

https://api.istex.fr/ark:/67375/HXZ-6C9P4MVJ-9/fulltext.pdf

DOI: 10.1093/bioinformatics/11.5.563

Links to Exploration step

ISTEX:368940217996A628F50D58C690501E9CE9B4E21B

Le document en format XML

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<abstract>The information matrix database (IMD), a database of weight matrices of transcription factor binding sites, is developed. MATRIX SEARCH, a program which can find potential transcription factor binding sites in DNA sequences using the IMD database, is also developed and accompanies the IMD database. MATRIX SEARCH adopts a user interface very similar to that of the SIGNAL SCAN program. MATRIX SEARCH allows the user to search an input sequence with the IMD automatically, to visualize the matrix representations of sites for particular factors, and to retrieve journal citations. The source code for MATRIX SEARCH is in the ‘C’ language, and the program is available for unix platforms.</abstract>
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<subject><topic>COMMUNICATIONS</topic>
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<identifier type="ISSN">1367-4803</identifier>
<identifier type="eISSN">1460-2059</identifier>
<identifier type="PublisherID">bioinformatics</identifier>
<identifier type="PublisherID-hwp">bioinfo</identifier>
<part><date>1995</date>
<detail type="volume"><caption>vol.</caption>
<number>11</number>
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<number>5</number>
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<extent unit="pages"><start>563</start>
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<identifier type="DOI">10.1093/bioinformatics/11.5.563</identifier>
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MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices

MATRIX SEARCH 1.0: a computer program that scans DNA sequences for transcriptional elements using a database of weight matrices

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