A Physical Origin for Functional Domain Structure in Nucleic Acids as Evidenced by Cross-linking Entropy: I

A Physical Origin for Functional Domain Structure in Nucleic Acids as Evidenced by Cross-linking Entropy: I

Source :

• Journal of Theoretical Biology [ 0022-5193 ] ; 2001.

English descriptors

• Teeft :
  • Academic press, Achter felsenfeld, Algorithm, Ambient temp, Average separation, Average structure, Base pair, Base pairing, Biol, Biopolymers, Central limit theorem, Chem, Chemical bond, Chemical bonds, Coil state, Conceptual model, Cornell university press, Crosslinking, Crosslinking entropy, Dawson, Dawson yamamoto, De5nition, Debe goddard, Delisi, Delisi crothers, Domain, Domain boundaries, Domain boundary, Domain size, Domain structure, Double strand, Dsdna, Dynamic programming algorithm, Eisenberg felsenfeld, Entire sequence, Entropic, Entropic contribution, Entropic contributions, Entropic penalties, Entropic penalty, Entropy, Entropy contribution, Entropy model, Eqns, Equilibrium separation, Equilibrium separation distance, Equilibrium thermodynamics, Escherichia coli, Exibility, Exible, Experimental conditions, Experimental evidence, Feller, Felsenfeld, Flory, Free energy, Functional domain, Functional domain structure, Functional domains, Gaussian, Gaussian polymer chain, Gaussian polymer chain model, Genome informatics series, Gibbs dimarzio, Gray bars, Grosberg, Grosberg khokhlov, Hairpin, Hairpin loop, Helix, Hemispheric balls, Hierarchal complexity, Hydrogen bonds, Hypothetical experiment, Ideal polymer chain, Imbl, Individual monomers, Internal loop, Internal loops, Intron, James guth, John wiley sons, Kcal, Khokhlov, Larger circle, Linear increase, Links, Logarithmic, Logarithmic contribution, Logarithmic term, Long list, Loop penalty, Loop regions, Maximum number, Mers, Minimum size, Molecular machinery, Molecular machines, Monomer, Monomer separation distance, Mrna, Multibranch, Multibranch loops, Natl acad, Nearest neighbor, Nnss, Nnss algorithms, Nnss strategies, Nucl, Nucleic, Nucleic acid, Nucleic acid sequences, Nucleic acids, Nucleotide, Other hand, Other words, Outer circle, Pairing, Partition function, Peptide, Persistence, Persistence length, Persistence lengths, Persistence ratio, Phantom network, Phys, Plischke bergersen, Pmbl, Poland scheraga, Polymer, Polymer chain, Polymer chains, Polymer physics, Polymer science, Private comm, Probability density function, Protein structure calculations, Reaction intermediates, Real polymer, Real polymers, Respective centers, Ribosomal subunit, Same chain, Same persistence length, Same polymer chain, Schematic example, Scheraga, Sears salinger, Secondary structure, Secondary structure calculations, Secondary structure plot, Secondary structure prediction, Secondary structures, Separation distance, Sequence length, Single strand, Small amount, Square displacement, Ssdna, Ssrna, Statistical mechanics, Structure prediction, Subdomain, Suboptimal structures, Temperature dependence, Temperature increases, Thermodynamic, Thermodynamic equilibrium, Thermodynamic probability, Thermodynamics, Thin lines, Tinoco, Total entropy, Total length, Total number, Traditional nnss approaches, Turner energy rules, Universal academy press, Volume dependence, Weight function, Weighted contribution, Williams tinoco, Yamamoto, Zuker, Zuker stiegler.

Abstract

• https://api.istex.fr/ark:/67375/6H6-S8QRL4ND-7/fulltext.pdf

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