MersV1, France, Analysis, bibRecord, 000080

Spaced seeds improve k-mer-based metagenomic classification.

Identifieur interne : 000080 ( France/Analysis ); précédent : 000079; suivant : 000081

Spaced seeds improve k-mer-based metagenomic classification.

Auteurs : Karel B Inda [France] ; Maciej Sykulski [France] ; Gregory Kucherov [France]

Source :

Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2015.

RBID : pubmed:26209798

Descripteurs français

KwdFr :
- Algorithmes, Alignement de séquences, Bacillus (génétique), Bases de données génétiques, Génome bactérien, Mycobacterium (génétique), Métagénomique (), Probabilité, Statistique non paramétrique.
MESH :
- génétique : Bacillus, Mycobacterium.
- Algorithmes, Alignement de séquences, Bases de données génétiques, Génome bactérien, Métagénomique, Probabilité, Statistique non paramétrique.

English descriptors

KwdEn :
- Algorithms, Bacillus (genetics), Databases, Genetic, Genome, Bacterial, Metagenomics (classification), Mycobacterium (genetics), Probability, Sequence Alignment, Statistics, Nonparametric.
MESH :
- classification : Metagenomics.
- genetics : Bacillus, Mycobacterium.
- Algorithms, Databases, Genetic, Genome, Bacterial, Probability, Sequence Alignment, Statistics, Nonparametric.

Abstract

Metagenomics is a powerful approach to study genetic content of environmental samples, which has been strongly promoted by next-generation sequencing technologies. To cope with massive data involved in modern metagenomic projects, recent tools rely on the analysis of k-mers shared between the read to be classified and sampled reference genomes.

DOI: 10.1093/bioinformatics/btv419
PubMed: 26209798

Affiliations:

Links to Exploration step

pubmed:26209798

Le document en format XML

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<front><div type="abstract" xml:lang="en">Metagenomics is a powerful approach to study genetic content of environmental samples, which has been strongly promoted by next-generation sequencing technologies. To cope with massive data involved in modern metagenomic projects, recent tools rely on the analysis of k-mers shared between the read to be classified and sampled reference genomes.</div>
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Serveur d'exploration MERS

Spaced seeds improve k-mer-based metagenomic classification.

Spaced seeds improve k-mer-based metagenomic classification.

Source :

Descripteurs français

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki

	Serveur d'exploration MERS
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