Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco.
Identifieur interne : 000713 ( PubMed/Corpus ); précédent : 000712; suivant : 000714Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco.
Auteurs : Samira Badri ; Aziz Fassouane ; Ingrid Filliol ; Mohammed Hassar ; Nozha CohenSource :
- Journal of microbiology (Seoul, Korea) [ 1976-3794 ] ; 2010.
English descriptors
- KwdEn :
- Antigens, Bacterial (genetics), Bacterial Typing Techniques (methods), Cluster Analysis (MeSH), DNA Fingerprinting (methods), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), Deoxyribonucleases, Type II Site-Specific (metabolism), Escherichia coli (classification), Escherichia coli (genetics), Escherichia coli (isolation & purification), Escherichia coli Proteins (genetics), Flagellin (MeSH), Food Microbiology (MeSH), Genotype (MeSH), Molecular Sequence Data (MeSH), Morocco (MeSH), Polymerase Chain Reaction (methods), Polymorphism, Restriction Fragment Length (MeSH), Sequence Analysis (MeSH).
- MESH :
- chemical , chemistry : DNA, Bacterial.
- chemical , genetics : Antigens, Bacterial, DNA, Bacterial, Escherichia coli Proteins.
- chemical , metabolism : Deoxyribonucleases, Type II Site-Specific.
- geographic : Morocco.
- classification : Escherichia coli.
- genetics : Escherichia coli.
- isolation & purification : Escherichia coli.
- methods : Bacterial Typing Techniques, DNA Fingerprinting, Polymerase Chain Reaction.
- Cluster Analysis, Flagellin, Food Microbiology, Genotype, Molecular Sequence Data, Polymorphism, Restriction Fragment Length, Sequence Analysis.
Abstract
In order to develop other molecular method useful for typing of motile and non motile Escherichia coli strains, a total of 207 strains of E. coli (133 reference strains, 74 food strains) were characterized by analysis of sequences of their amplified flagellin-encoding (fliC) gene products. The collection of reference strains was used for database building of fliC gene sequences. Application of this identification system to 74 E. coli food isolates revealed a reproducible and clear cut classification with very good correlation to results obtained by HhaI restriction of the amplified flagellin gene. The proposed determination of fliC sequences variations should be helpful for epidemiological studies.
DOI: 10.1007/s12275-010-9182-1
PubMed: 20437150
Links to Exploration step
pubmed:20437150Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco.</title><author><name sortKey="Badri, Samira" sort="Badri, Samira" uniqKey="Badri S" first="Samira" last="Badri">Samira Badri</name><affiliation><nlm:affiliation>Laboratoire de Microbiologie et d'Hygiène des Aliments et de l'Environnement, Institut Pasteur du Maroc, Casablanca, 20100, Morocco. samira_bdm@yahoo.fr</nlm:affiliation></affiliation></author><author><name sortKey="Fassouane, Aziz" sort="Fassouane, Aziz" uniqKey="Fassouane A" first="Aziz" last="Fassouane">Aziz Fassouane</name></author><author><name sortKey="Filliol, Ingrid" sort="Filliol, Ingrid" uniqKey="Filliol I" first="Ingrid" last="Filliol">Ingrid Filliol</name></author><author><name sortKey="Hassar, Mohammed" sort="Hassar, Mohammed" uniqKey="Hassar M" first="Mohammed" last="Hassar">Mohammed Hassar</name></author><author><name sortKey="Cohen, Nozha" sort="Cohen, Nozha" uniqKey="Cohen N" first="Nozha" last="Cohen">Nozha Cohen</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2010">2010</date><idno type="RBID">pubmed:20437150</idno><idno type="pmid">20437150</idno><idno type="doi">10.1007/s12275-010-9182-1</idno><idno type="wicri:Area/PubMed/Corpus">000713</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000713</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco.</title><author><name sortKey="Badri, Samira" sort="Badri, Samira" uniqKey="Badri S" first="Samira" last="Badri">Samira Badri</name><affiliation><nlm:affiliation>Laboratoire de Microbiologie et d'Hygiène des Aliments et de l'Environnement, Institut Pasteur du Maroc, Casablanca, 20100, Morocco. samira_bdm@yahoo.fr</nlm:affiliation></affiliation></author><author><name sortKey="Fassouane, Aziz" sort="Fassouane, Aziz" uniqKey="Fassouane A" first="Aziz" last="Fassouane">Aziz Fassouane</name></author><author><name sortKey="Filliol, Ingrid" sort="Filliol, Ingrid" uniqKey="Filliol I" first="Ingrid" last="Filliol">Ingrid Filliol</name></author><author><name sortKey="Hassar, Mohammed" sort="Hassar, Mohammed" uniqKey="Hassar M" first="Mohammed" last="Hassar">Mohammed Hassar</name></author><author><name sortKey="Cohen, Nozha" sort="Cohen, Nozha" uniqKey="Cohen N" first="Nozha" last="Cohen">Nozha Cohen</name></author></analytic><series><title level="j">Journal of microbiology (Seoul, Korea)</title><idno type="eISSN">1976-3794</idno><imprint><date when="2010" type="published">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Antigens, Bacterial (genetics)</term><term>Bacterial Typing Techniques (methods)</term><term>Cluster Analysis (MeSH)</term><term>DNA Fingerprinting (methods)</term><term>DNA, Bacterial (chemistry)</term><term>DNA, Bacterial (genetics)</term><term>Deoxyribonucleases, Type II Site-Specific (metabolism)</term><term>Escherichia coli (classification)</term><term>Escherichia coli (genetics)</term><term>Escherichia coli (isolation & purification)</term><term>Escherichia coli Proteins (genetics)</term><term>Flagellin (MeSH)</term><term>Food Microbiology (MeSH)</term><term>Genotype (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Morocco (MeSH)</term><term>Polymerase Chain Reaction (methods)</term><term>Polymorphism, Restriction Fragment Length (MeSH)</term><term>Sequence Analysis (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Bacterial</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Antigens, Bacterial</term><term>DNA, Bacterial</term><term>Escherichia coli Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Deoxyribonucleases, Type II Site-Specific</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Morocco</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Escherichia coli</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Bacterial Typing Techniques</term><term>DNA Fingerprinting</term><term>Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Cluster Analysis</term><term>Flagellin</term><term>Food Microbiology</term><term>Genotype</term><term>Molecular Sequence Data</term><term>Polymorphism, Restriction Fragment Length</term><term>Sequence Analysis</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In order to develop other molecular method useful for typing of motile and non motile Escherichia coli strains, a total of 207 strains of E. coli (133 reference strains, 74 food strains) were characterized by analysis of sequences of their amplified flagellin-encoding (fliC) gene products. The collection of reference strains was used for database building of fliC gene sequences. Application of this identification system to 74 E. coli food isolates revealed a reproducible and clear cut classification with very good correlation to results obtained by HhaI restriction of the amplified flagellin gene. The proposed determination of fliC sequences variations should be helpful for epidemiological studies.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">20437150</PMID><DateCompleted><Year>2010</Year><Month>07</Month><Day>19</Day></DateCompleted><DateRevised><Year>2019</Year><Month>12</Month><Day>10</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1976-3794</ISSN><JournalIssue CitedMedium="Internet"><Volume>48</Volume><Issue>2</Issue><PubDate><Year>2010</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Journal of microbiology (Seoul, Korea)</Title><ISOAbbreviation>J Microbiol</ISOAbbreviation></Journal><ArticleTitle>Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco.</ArticleTitle><Pagination><MedlinePgn>184-7</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s12275-010-9182-1</ELocationID><Abstract><AbstractText>In order to develop other molecular method useful for typing of motile and non motile Escherichia coli strains, a total of 207 strains of E. coli (133 reference strains, 74 food strains) were characterized by analysis of sequences of their amplified flagellin-encoding (fliC) gene products. The collection of reference strains was used for database building of fliC gene sequences. Application of this identification system to 74 E. coli food isolates revealed a reproducible and clear cut classification with very good correlation to results obtained by HhaI restriction of the amplified flagellin gene. The proposed determination of fliC sequences variations should be helpful for epidemiological studies.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Badri</LastName><ForeName>Samira</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Laboratoire de Microbiologie et d'Hygiène des Aliments et de l'Environnement, Institut Pasteur du Maroc, Casablanca, 20100, Morocco. samira_bdm@yahoo.fr</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fassouane</LastName><ForeName>Aziz</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Filliol</LastName><ForeName>Ingrid</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Hassar</LastName><ForeName>Mohammed</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Cohen</LastName><ForeName>Nozha</ForeName><Initials>N</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D023362">Evaluation Study</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2010</Year><Month>05</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>Korea (South)</Country><MedlineTA>J Microbiol</MedlineTA><NlmUniqueID>9703165</NlmUniqueID><ISSNLinking>1225-8873</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000942">Antigens, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D029968">Escherichia coli Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C516095">FliC protein, E coli</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="C022863">H antigen</NameOfSubstance></Chemical><Chemical><RegistryNumber>12777-81-0</RegistryNumber><NameOfSubstance UI="D005408">Flagellin</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.1.21.4</RegistryNumber><NameOfSubstance UI="D015252">Deoxyribonucleases, Type II Site-Specific</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.1.21.4</RegistryNumber><NameOfSubstance UI="C037130">GCGC-specific type II deoxyribonucleases</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000942" MajorTopicYN="N">Antigens, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015373" MajorTopicYN="N">Bacterial Typing Techniques</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016172" MajorTopicYN="N">DNA Fingerprinting</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="N">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015252" MajorTopicYN="N">Deoxyribonucleases, Type II Site-Specific</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004926" MajorTopicYN="N">Escherichia coli</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D029968" MajorTopicYN="N">Escherichia coli Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005408" MajorTopicYN="N">Flagellin</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005516" MajorTopicYN="Y">Food Microbiology</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009018" MajorTopicYN="N" Type="Geographic">Morocco</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016133" MajorTopicYN="N">Polymerase Chain Reaction</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012150" MajorTopicYN="Y">Polymorphism, Restriction Fragment Length</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017421" MajorTopicYN="N">Sequence Analysis</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2009</Year><Month>06</Month><Day>08</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2009</Year><Month>10</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2010</Year><Month>5</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2010</Year><Month>5</Month><Day>4</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2010</Year><Month>7</Month><Day>20</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">20437150</ArticleId><ArticleId IdType="doi">10.1007/s12275-010-9182-1</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>J Gen Microbiol. 1967 Feb;46(2):175-84</Citation><ArticleIdList><ArticleId IdType="pubmed">4961758</ArticleId></ArticleIdList></Reference><Reference><Citation>Can J Microbiol. 1988 Apr;34(4):452-8</Citation><ArticleIdList><ArticleId IdType="pubmed">3052755</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2000 Jul 6;406(6791):64-7</Citation><ArticleIdList><ArticleId IdType="pubmed">10894541</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiol Rev. 1988 Dec;52(4):533-5</Citation><ArticleIdList><ArticleId IdType="pubmed">3070322</ArticleId></ArticleIdList></Reference><Reference><Citation>J Infect Dis. 1983 Dec;148(6):1019-24</Citation><ArticleIdList><ArticleId IdType="pubmed">6361170</ArticleId></ArticleIdList></Reference><Reference><Citation>Res Microbiol. 2000 Sep;151(7):535-46</Citation><ArticleIdList><ArticleId IdType="pubmed">11037131</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiology. 1997 Oct;143 ( Pt 10):3071-84</Citation><ArticleIdList><ArticleId IdType="pubmed">9353913</ArticleId></ArticleIdList></Reference><Reference><Citation>Res Microbiol. 1999 Sep;150(7):457-63</Citation><ArticleIdList><ArticleId IdType="pubmed">10540909</ArticleId></ArticleIdList></Reference><Reference><Citation>Res Microbiol. 2000 Oct;151(8):639-54</Citation><ArticleIdList><ArticleId IdType="pubmed">11081579</ArticleId></ArticleIdList></Reference><Reference><Citation>J Antimicrob Chemother. 2006 Jun;57(6):1210-4</Citation><ArticleIdList><ArticleId IdType="pubmed">16603644</ArticleId></ArticleIdList></Reference><Reference><Citation>Int J Med Microbiol. 2000 May;290(2):153-65</Citation><ArticleIdList><ArticleId IdType="pubmed">11045920</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2001 May-Jun;7(3):382-9</Citation><ArticleIdList><ArticleId IdType="pubmed">11384513</ArticleId></ArticleIdList></Reference><Reference><Citation>J Bacteriol. 1999 Jan;181(1):153-60</Citation><ArticleIdList><ArticleId IdType="pubmed">9864325</ArticleId></ArticleIdList></Reference><Reference><Citation>J Infect Dis. 1987 Mar;155(3):377-89</Citation><ArticleIdList><ArticleId IdType="pubmed">3543152</ArticleId></ArticleIdList></Reference><Reference><Citation>Biophys J. 2006 Jan 1;90(1):310-7</Citation><ArticleIdList><ArticleId IdType="pubmed">16214861</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 1998 Oct;36(10):2835-43</Citation><ArticleIdList><ArticleId IdType="pubmed">9738029</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2000 Aug;38(8):2989-93</Citation><ArticleIdList><ArticleId IdType="pubmed">10921965</ArticleId></ArticleIdList></Reference><Reference><Citation>FEMS Microbiol Lett. 2005 Aug 15;249(2):335-42</Citation><ArticleIdList><ArticleId IdType="pubmed">16046083</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 1997 May;35(5):1066-70</Citation><ArticleIdList><ArticleId IdType="pubmed">9114382</ArticleId></ArticleIdList></Reference><Reference><Citation>J Bacteriol. 1988 Jan;170(1):485-8</Citation><ArticleIdList><ArticleId IdType="pubmed">3275631</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 1993 May;31(5):1108-10</Citation><ArticleIdList><ArticleId IdType="pubmed">8388886</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/MaghrebDataLibMedV2/Data/PubMed/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000713 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd -nk 000713 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Sante
|area= MaghrebDataLibMedV2
|flux= PubMed
|étape= Corpus
|type= RBID
|clé= pubmed:20437150
|texte= Sequence analysis of the gene encoding H antigen in Escherichia coli isolated from food in Morocco.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/RBID.i -Sk "pubmed:20437150" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a MaghrebDataLibMedV2
| This area was generated with Dilib version V0.6.38. |  |