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52 additional reference population samples for the 55 AISNP panel.

Identifieur interne : 000520 ( PubMed/Corpus ); précédent : 000519; suivant : 000521

52 additional reference population samples for the 55 AISNP panel.

Auteurs : Andrew J. Pakstis ; Eva Haigh ; Lotfi Cherni ; Amel Ben Ammar Elgaaied ; Alison Barton ; Baigalmaa Evsanaa ; Ariunaa Togtokh ; Jane Brissenden ; Janet Roscoe ; Ozlem Bulbul ; Gonul Filoglu ; Cemal Gurkan ; Kelly A. Meiklejohn ; James M. Robertson ; Cai-Xia Li ; Yi-Liang Wei ; Hui Li ; Usha Soundararajan ; Haseena Rajeevan ; Judith R. Kidd ; Kenneth K. Kidd

Source :

RBID : pubmed:26355664

English descriptors

Abstract

Ancestry inference for a person using a panel of SNPs depends on the variation of frequencies of those SNPs around the world and the amount of reference data available for calculation/comparison. The Kidd Lab panel of 55 AISNPs has been incorporated in commercial kits by both Life Technologies and Illumina for massively parallel sequencing. Therefore, a larger set of reference populations will be useful for researchers using those kits. We have added reference population allele frequencies for 52 population samples to the 73 previously entered so that there are now allele frequencies publicly available in ALFRED and FROG-kb for a total of 125 population samples.

DOI: 10.1016/j.fsigen.2015.08.003
PubMed: 26355664

Links to Exploration step

pubmed:26355664

Le document en format XML

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<name sortKey="Soundararajan, Usha" sort="Soundararajan, Usha" uniqKey="Soundararajan U" first="Usha" last="Soundararajan">Usha Soundararajan</name>
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<name sortKey="Filoglu, Gonul" sort="Filoglu, Gonul" uniqKey="Filoglu G" first="Gonul" last="Filoglu">Gonul Filoglu</name>
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<nlm:affiliation>Institute of Forensic Science, Istanbul University, Istanbul, Turkey.</nlm:affiliation>
</affiliation>
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<name sortKey="Gurkan, Cemal" sort="Gurkan, Cemal" uniqKey="Gurkan C" first="Cemal" last="Gurkan">Cemal Gurkan</name>
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<nlm:affiliation>Turkish Cypriot DNA Laboratory, Committee on Missing Persons in Cyprus Turkish Cypriot Member Office, Nicosia, North Cyprus, Cyprus.</nlm:affiliation>
</affiliation>
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<name sortKey="Meiklejohn, Kelly A" sort="Meiklejohn, Kelly A" uniqKey="Meiklejohn K" first="Kelly A" last="Meiklejohn">Kelly A. Meiklejohn</name>
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</affiliation>
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<name sortKey="Li, Cai Xia" sort="Li, Cai Xia" uniqKey="Li C" first="Cai-Xia" last="Li">Cai-Xia Li</name>
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<nlm:affiliation>Research Centre of Applied Forensic Science Technologies, Institute of Forensic Science, Ministry of Public Security, Beijing 100038, PR China.</nlm:affiliation>
</affiliation>
</author>
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<name sortKey="Wei, Yi Liang" sort="Wei, Yi Liang" uniqKey="Wei Y" first="Yi-Liang" last="Wei">Yi-Liang Wei</name>
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<nlm:affiliation>Research Centre of Applied Forensic Science Technologies, Institute of Forensic Science, Ministry of Public Security, Beijing 100038, PR China; Department of Immunology, Biochemistry and Molecular Biology, 2011 Collaborative Innovation Center of Tianjin for Medical Epigenetics, Tianjin Medical University, Tianjin 300070, PR China.</nlm:affiliation>
</affiliation>
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<name sortKey="Li, Hui" sort="Li, Hui" uniqKey="Li H" first="Hui" last="Li">Hui Li</name>
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<nlm:affiliation>MOE State Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai, PR China.</nlm:affiliation>
</affiliation>
</author>
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<name sortKey="Soundararajan, Usha" sort="Soundararajan, Usha" uniqKey="Soundararajan U" first="Usha" last="Soundararajan">Usha Soundararajan</name>
<affiliation>
<nlm:affiliation>Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Rajeevan, Haseena" sort="Rajeevan, Haseena" uniqKey="Rajeevan H" first="Haseena" last="Rajeevan">Haseena Rajeevan</name>
<affiliation>
<nlm:affiliation>Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Kidd, Judith R" sort="Kidd, Judith R" uniqKey="Kidd J" first="Judith R" last="Kidd">Judith R. Kidd</name>
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<nlm:affiliation>Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.</nlm:affiliation>
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<name sortKey="Kidd, Kenneth K" sort="Kidd, Kenneth K" uniqKey="Kidd K" first="Kenneth K" last="Kidd">Kenneth K. Kidd</name>
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<nlm:affiliation>Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA.</nlm:affiliation>
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<div type="abstract" xml:lang="en">Ancestry inference for a person using a panel of SNPs depends on the variation of frequencies of those SNPs around the world and the amount of reference data available for calculation/comparison. The Kidd Lab panel of 55 AISNPs has been incorporated in commercial kits by both Life Technologies and Illumina for massively parallel sequencing. Therefore, a larger set of reference populations will be useful for researchers using those kits. We have added reference population allele frequencies for 52 population samples to the 73 previously entered so that there are now allele frequencies publicly available in ALFRED and FROG-kb for a total of 125 population samples. </div>
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<AbstractText>Ancestry inference for a person using a panel of SNPs depends on the variation of frequencies of those SNPs around the world and the amount of reference data available for calculation/comparison. The Kidd Lab panel of 55 AISNPs has been incorporated in commercial kits by both Life Technologies and Illumina for massively parallel sequencing. Therefore, a larger set of reference populations will be useful for researchers using those kits. We have added reference population allele frequencies for 52 population samples to the 73 previously entered so that there are now allele frequencies publicly available in ALFRED and FROG-kb for a total of 125 population samples. </AbstractText>
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<Affiliation>Department of Medicine, University of Toronto, Toronto, ON M5S, Canada; Department of Nephrology, Health Sciences University of Mongolia, Khoroo 1, Ulaanbataar, Mongolia.</Affiliation>
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<Affiliation>Department of Medicine, University of Toronto, Toronto, ON M5S, Canada; Department of Medicine, The Scarborough Hospital, Toronto, ON M1P 2V5, Canada.</Affiliation>
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<Affiliation>Department of Genetics, Yale University School of Medicine, New Haven, CT 06520, USA; Institute of Forensic Science, Istanbul University, Istanbul, Turkey.</Affiliation>
</AffiliationInfo>
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<LastName>Filoglu</LastName>
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<Affiliation>Institute of Forensic Science, Istanbul University, Istanbul, Turkey.</Affiliation>
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