ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus.
Identifieur interne : 000466 ( PubMed/Corpus ); précédent : 000465; suivant : 000467ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus.
Auteurs : Abdelmajid Zouhir ; Malek Taieb ; Mohamed Ashraf Lamine ; Ammar Cherif ; Taoufik Jridi ; Basma Mahjoubi ; Sarra Mbarek ; Ismail Fliss ; Adel Nefzi ; Khaled Sebei ; Jeannette Ben HamidaSource :
- Archives of microbiology [ 1432-072X ] ; 2017.
English descriptors
- KwdEn :
- Anti-Bacterial Agents (chemistry), Anti-Bacterial Agents (pharmacology), Databases, Pharmaceutical (MeSH), Methicillin-Resistant Staphylococcus aureus (drug effects), Oils, Volatile (pharmacology), Peptides (chemistry), Peptides (pharmacology), Staphylococcus aureus (drug effects), Structure-Activity Relationship (MeSH).
- MESH :
- chemical , chemistry : Anti-Bacterial Agents, Peptides.
- chemical , pharmacology : Anti-Bacterial Agents, Oils, Volatile, Peptides.
- drug effects : Methicillin-Resistant Staphylococcus aureus, Staphylococcus aureus.
- Databases, Pharmaceutical, Structure-Activity Relationship.
Abstract
Staphylococcus aureus and methicillin-resistant S. aureus are major pathogens. The antimicrobial peptides and essential oils (EOs) display narrow- or broad-spectrum activity against bacteria including these strains. A centralized resource, such as a database, designed specifically for anti-S. aureus/anti-methicillin-resistant S. aureus antimicrobial peptides and EOs is therefore needed to facilitate the comprehensive investigation of their structure/activity associations and combinations. The database ANTISTAPHYBASE is created to facilitate access to important information on antimicrobial peptides and essential peptides against methicillin-resistant S. aureus and S. aureus. At the moment, the database contains 596 sequences of antimicrobial peptides produced by diverse organisms and 287 essential oil records. It permits a quick and easy search of peptides based on their activity as well as their general, physicochemical properties and literature data. These data are very useful to perform further bioinformatic or chemometric analysis and would certainly be useful for the development of new drugs for medical use. The ANTISTAPHYBASE database is freely available at: https://www.antistaphybase.com/ .
DOI: 10.1007/s00203-016-1293-6
PubMed: 27671474
Links to Exploration step
pubmed:27671474Le document en format XML
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Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Lamine, Mohamed Ashraf" sort="Lamine, Mohamed Ashraf" uniqKey="Lamine M" first="Mohamed Ashraf" last="Lamine">Mohamed Ashraf Lamine</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Cherif, Ammar" sort="Cherif, Ammar" uniqKey="Cherif A" first="Ammar" last="Cherif">Ammar Cherif</name><affiliation><nlm:affiliation>Faculty of Sciences of Tunis, Université of El Manar , Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Jridi, Taoufik" sort="Jridi, Taoufik" uniqKey="Jridi T" first="Taoufik" last="Jridi">Taoufik Jridi</name><affiliation><nlm:affiliation>Nutraceuticals and 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of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Ben Hamida, Jeannette" sort="Ben Hamida, Jeannette" uniqKey="Ben Hamida J" first="Jeannette" last="Ben Hamida">Jeannette Ben Hamida</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:27671474</idno><idno type="pmid">27671474</idno><idno type="doi">10.1007/s00203-016-1293-6</idno><idno 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Malek" uniqKey="Taieb M" first="Malek" last="Taieb">Malek Taieb</name><affiliation><nlm:affiliation>Faculty of Sciences of Gabes, University of gabes, Gabès, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Lamine, Mohamed Ashraf" sort="Lamine, Mohamed Ashraf" uniqKey="Lamine M" first="Mohamed Ashraf" last="Lamine">Mohamed Ashraf Lamine</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Cherif, Ammar" sort="Cherif, Ammar" uniqKey="Cherif A" first="Ammar" last="Cherif">Ammar Cherif</name><affiliation><nlm:affiliation>Faculty of Sciences of Tunis, Université of El Manar , Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Jridi, Taoufik" sort="Jridi, Taoufik" uniqKey="Jridi T" first="Taoufik" last="Jridi">Taoufik Jridi</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Mahjoubi, Basma" sort="Mahjoubi, Basma" uniqKey="Mahjoubi B" first="Basma" last="Mahjoubi">Basma Mahjoubi</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Mbarek, Sarra" sort="Mbarek, Sarra" uniqKey="Mbarek S" first="Sarra" last="Mbarek">Sarra Mbarek</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Fliss, Ismail" sort="Fliss, Ismail" uniqKey="Fliss I" first="Ismail" last="Fliss">Ismail Fliss</name><affiliation><nlm:affiliation>Institut des Nutraceutiques et des Aliments Fonctionnels (INAF), Université Laval, Quebec, Canada.</nlm:affiliation></affiliation></author><author><name sortKey="Nefzi, Adel" sort="Nefzi, Adel" uniqKey="Nefzi A" first="Adel" last="Nefzi">Adel Nefzi</name><affiliation><nlm:affiliation>Torrey Pines Institute for Molecular Studies, Port St. Lucie, FL, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Sebei, Khaled" sort="Sebei, Khaled" uniqKey="Sebei K" first="Khaled" last="Sebei">Khaled Sebei</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author><author><name sortKey="Ben Hamida, Jeannette" sort="Ben Hamida, Jeannette" uniqKey="Ben Hamida J" first="Jeannette" last="Ben Hamida">Jeannette Ben Hamida</name><affiliation><nlm:affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Archives of microbiology</title><idno type="eISSN">1432-072X</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Anti-Bacterial Agents (chemistry)</term><term>Anti-Bacterial Agents (pharmacology)</term><term>Databases, Pharmaceutical (MeSH)</term><term>Methicillin-Resistant Staphylococcus aureus (drug effects)</term><term>Oils, Volatile (pharmacology)</term><term>Peptides (chemistry)</term><term>Peptides (pharmacology)</term><term>Staphylococcus aureus (drug effects)</term><term>Structure-Activity Relationship (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Anti-Bacterial Agents</term><term>Peptides</term></keywords><keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en"><term>Anti-Bacterial Agents</term><term>Oils, Volatile</term><term>Peptides</term></keywords><keywords scheme="MESH" qualifier="drug effects" xml:lang="en"><term>Methicillin-Resistant Staphylococcus aureus</term><term>Staphylococcus aureus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Databases, Pharmaceutical</term><term>Structure-Activity Relationship</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Staphylococcus aureus and methicillin-resistant S. aureus are major pathogens. The antimicrobial peptides and essential oils (EOs) display narrow- or broad-spectrum activity against bacteria including these strains. A centralized resource, such as a database, designed specifically for anti-S. aureus/anti-methicillin-resistant S. aureus antimicrobial peptides and EOs is therefore needed to facilitate the comprehensive investigation of their structure/activity associations and combinations. The database ANTISTAPHYBASE is created to facilitate access to important information on antimicrobial peptides and essential peptides against methicillin-resistant S. aureus and S. aureus. At the moment, the database contains 596 sequences of antimicrobial peptides produced by diverse organisms and 287 essential oil records. It permits a quick and easy search of peptides based on their activity as well as their general, physicochemical properties and literature data. These data are very useful to perform further bioinformatic or chemometric analysis and would certainly be useful for the development of new drugs for medical use. The ANTISTAPHYBASE database is freely available at: https://www.antistaphybase.com/ .</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">27671474</PMID><DateCompleted><Year>2017</Year><Month>04</Month><Day>28</Day></DateCompleted><DateRevised><Year>2018</Year><Month>12</Month><Day>02</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-072X</ISSN><JournalIssue CitedMedium="Internet"><Volume>199</Volume><Issue>2</Issue><PubDate><Year>2017</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Archives of microbiology</Title><ISOAbbreviation>Arch Microbiol</ISOAbbreviation></Journal><ArticleTitle>ANTISTAPHYBASE: database of antimicrobial peptides (AMPs) and essential oils (EOs) against methicillin-resistant Staphylococcus aureus (MRSA) and Staphylococcus aureus.</ArticleTitle><Pagination><MedlinePgn>215-222</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00203-016-1293-6</ELocationID><Abstract><AbstractText>Staphylococcus aureus and methicillin-resistant S. aureus are major pathogens. The antimicrobial peptides and essential oils (EOs) display narrow- or broad-spectrum activity against bacteria including these strains. A centralized resource, such as a database, designed specifically for anti-S. aureus/anti-methicillin-resistant S. aureus antimicrobial peptides and EOs is therefore needed to facilitate the comprehensive investigation of their structure/activity associations and combinations. The database ANTISTAPHYBASE is created to facilitate access to important information on antimicrobial peptides and essential peptides against methicillin-resistant S. aureus and S. aureus. At the moment, the database contains 596 sequences of antimicrobial peptides produced by diverse organisms and 287 essential oil records. It permits a quick and easy search of peptides based on their activity as well as their general, physicochemical properties and literature data. These data are very useful to perform further bioinformatic or chemometric analysis and would certainly be useful for the development of new drugs for medical use. The ANTISTAPHYBASE database is freely available at: https://www.antistaphybase.com/ .</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Zouhir</LastName><ForeName>Abdelmajid</ForeName><Initials>A</Initials><Identifier Source="ORCID">http://orcid.org/0000-0002-8212-0959</Identifier><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia. zouheirabdelmajid@yahoo.fr.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia. zouheirabdelmajid@yahoo.fr.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Taieb</LastName><ForeName>Malek</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Faculty of Sciences of Gabes, University of gabes, Gabès, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lamine</LastName><ForeName>Mohamed Ashraf</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cherif</LastName><ForeName>Ammar</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Faculty of Sciences of Tunis, Université of El Manar , Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jridi</LastName><ForeName>Taoufik</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mahjoubi</LastName><ForeName>Basma</ForeName><Initials>B</Initials><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mbarek</LastName><ForeName>Sarra</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fliss</LastName><ForeName>Ismail</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Institut des Nutraceutiques et des Aliments Fonctionnels (INAF), Université Laval, Quebec, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nefzi</LastName><ForeName>Adel</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Torrey Pines Institute for Molecular Studies, Port St. Lucie, FL, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sebei</LastName><ForeName>Khaled</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ben Hamida</LastName><ForeName>Jeannette</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Nutraceuticals and Functional Proteomics Potential of Biodiversity in Tunisia, University of Tunis ELMANAR, Tunis, Tunisia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Research Unit at Institute of Applied Biological Sciences Tunis (ISSBAT), Tunis, Tunisia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>09</Month><Day>26</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Arch Microbiol</MedlineTA><NlmUniqueID>0410427</NlmUniqueID><ISSNLinking>0302-8933</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000900">Anti-Bacterial Agents</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009822">Oils, Volatile</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010455">Peptides</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000900" MajorTopicYN="N">Anti-Bacterial Agents</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D062313" MajorTopicYN="Y">Databases, Pharmaceutical</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055624" MajorTopicYN="N">Methicillin-Resistant Staphylococcus aureus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009822" MajorTopicYN="N">Oils, Volatile</DescriptorName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010455" MajorTopicYN="N">Peptides</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000494" MajorTopicYN="Y">pharmacology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013211" MajorTopicYN="N">Staphylococcus aureus</DescriptorName><QualifierName UI="Q000187" MajorTopicYN="Y">drug effects</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013329" MajorTopicYN="N">Structure-Activity Relationship</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Anti-MRSA EOs</Keyword><Keyword MajorTopicYN="N">Anti-MRSA peptides</Keyword><Keyword MajorTopicYN="N">Anti-S. aureus EOs</Keyword><Keyword MajorTopicYN="N">Anti-S. aureus peptides</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate 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