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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Development of Bioinformatics Infrastructure for Genomics Research in H3Africa</title>
<author><name sortKey="Mulder, Nicola J" sort="Mulder, Nicola J" uniqKey="Mulder N" first="Nicola J" last="Mulder">Nicola J. Mulder</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Adebiyi, Ezekiel" sort="Adebiyi, Ezekiel" uniqKey="Adebiyi E" first="Ezekiel" last="Adebiyi">Ezekiel Adebiyi</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Adebiyi, Marion" sort="Adebiyi, Marion" uniqKey="Adebiyi M" first="Marion" last="Adebiyi">Marion Adebiyi</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Adeyemi, Seun" sort="Adeyemi, Seun" uniqKey="Adeyemi S" first="Seun" last="Adeyemi">Seun Adeyemi</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A4">Center for System and Information Service, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ahmed, Azza" sort="Ahmed, Azza" uniqKey="Ahmed A" first="Azza" last="Ahmed">Azza Ahmed</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ahmed, Rehab" sort="Ahmed, Rehab" uniqKey="Ahmed R" first="Rehab" last="Ahmed">Rehab Ahmed</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Akanle, Bola" sort="Akanle, Bola" uniqKey="Akanle B" first="Bola" last="Akanle">Bola Akanle</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A4">Center for System and Information Service, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Alibi, Mohamed" sort="Alibi, Mohamed" uniqKey="Alibi M" first="Mohamed" last="Alibi">Mohamed Alibi</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Armstrong, Don L" sort="Armstrong, Don L" uniqKey="Armstrong D" first="Don L" last="Armstrong">Don L. Armstrong</name>
<affiliation><nlm:aff id="A7">Institute for Genomic Biology, University of Illinois at Urbana-Champaign, USA;<email>don@donarmstrong.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Aron, Shaun" sort="Aron, Shaun" uniqKey="Aron S" first="Shaun" last="Aron">Shaun Aron</name>
<affiliation><nlm:aff id="A8">Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, South Africa;<email>shaun.aron@gmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ashano, Efejiro" sort="Ashano, Efejiro" uniqKey="Ashano E" first="Efejiro" last="Ashano">Efejiro Ashano</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A9">H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Baichoo, Shakuntala" sort="Baichoo, Shakuntala" uniqKey="Baichoo S" first="Shakuntala" last="Baichoo">Shakuntala Baichoo</name>
<affiliation><nlm:aff id="A10">University of Mauritius, Mauritius</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Benkahla, Alia" sort="Benkahla, Alia" uniqKey="Benkahla A" first="Alia" last="Benkahla">Alia Benkahla</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Brown, David K" sort="Brown, David K" uniqKey="Brown D" first="David K" last="Brown">David K. Brown</name>
<affiliation><nlm:aff id="A11">Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Chimusa, Emile R" sort="Chimusa, Emile R" uniqKey="Chimusa E" first="Emile R." last="Chimusa">Emile R. Chimusa</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A12">Division of Human Genetics, Department of Pathology, Faculty of Health Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Fadlelmola, Faisal M" sort="Fadlelmola, Faisal M" uniqKey="Fadlelmola F" first="Faisal M." last="Fadlelmola">Faisal M. Fadlelmola</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A13">Future University of Sudan, P.O. Box 10553 Khartoum, Sudan</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Falola, Dare" sort="Falola, Dare" uniqKey="Falola D" first="Dare" last="Falola">Dare Falola</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Fatumo, Segun" sort="Fatumo, Segun" uniqKey="Fatumo S" first="Segun" last="Fatumo">Segun Fatumo</name>
<affiliation><nlm:aff id="A9">H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ghedira, Kais" sort="Ghedira, Kais" uniqKey="Ghedira K" first="Kais" last="Ghedira">Kais Ghedira</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ghouila, Amel" sort="Ghouila, Amel" uniqKey="Ghouila A" first="Amel" last="Ghouila">Amel Ghouila</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Hazelhurst, Scott" sort="Hazelhurst, Scott" uniqKey="Hazelhurst S" first="Scott" last="Hazelhurst">Scott Hazelhurst</name>
<affiliation><nlm:aff id="A8">Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, South Africa;<email>shaun.aron@gmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Isewon, Iunu" sort="Isewon, Iunu" uniqKey="Isewon I" first="Iunu" last="Isewon">Iunu Isewon</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Jung, Segun" sort="Jung, Segun" uniqKey="Jung S" first="Segun" last="Jung">Segun Jung</name>
<affiliation><nlm:aff id="A15">Computation Institute, University of Chicago and Argonne National Laboratory;<email>sjung1@uchicago.edu</email>
;<email>arodri7@uchicago.edu</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kassim, Samar Kamal" sort="Kassim, Samar Kamal" uniqKey="Kassim S" first="Samar Kamal" last="Kassim">Samar Kamal Kassim</name>
<affiliation><nlm:aff id="A16">Medical Biochemistry Department, Faculty of Medicine, Ain Shams University, Abbaseya, Cairo, Egypt, 11591</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kayondo, Jonathan K" sort="Kayondo, Jonathan K" uniqKey="Kayondo J" first="Jonathan K" last="Kayondo">Jonathan K. Kayondo</name>
<affiliation><nlm:aff id="A17">Uganda Virus Research Institute (UVRI), Entebbe Uganda;<email>jkayondo@gmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mbiyavanga, Mamana" sort="Mbiyavanga, Mamana" uniqKey="Mbiyavanga M" first="Mamana" last="Mbiyavanga">Mamana Mbiyavanga</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Meintjes, Ayton" sort="Meintjes, Ayton" uniqKey="Meintjes A" first="Ayton" last="Meintjes">Ayton Meintjes</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mohammed, Somia" sort="Mohammed, Somia" uniqKey="Mohammed S" first="Somia" last="Mohammed">Somia Mohammed</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mosaku, Abayomi" sort="Mosaku, Abayomi" uniqKey="Mosaku A" first="Abayomi" last="Mosaku">Abayomi Mosaku</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moussa, Ahmed" sort="Moussa, Ahmed" uniqKey="Moussa A" first="Ahmed" last="Moussa">Ahmed Moussa</name>
<affiliation><nlm:aff id="A18">LAbTIC Laboratory, ENSA, Abdelmalek Essaadi University, Tangier, Morocco</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Muhammd, Mustafa" sort="Muhammd, Mustafa" uniqKey="Muhammd M" first="Mustafa" last="Muhammd">Mustafa Muhammd</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mungloo Dilmohamud, Zahra" sort="Mungloo Dilmohamud, Zahra" uniqKey="Mungloo Dilmohamud Z" first="Zahra" last="Mungloo-Dilmohamud">Zahra Mungloo-Dilmohamud</name>
<affiliation><nlm:aff id="A10">University of Mauritius, Mauritius</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Nashiru, Oyekanmi" sort="Nashiru, Oyekanmi" uniqKey="Nashiru O" first="Oyekanmi" last="Nashiru">Oyekanmi Nashiru</name>
<affiliation><nlm:aff id="A9">H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Odia, Trust" sort="Odia, Trust" uniqKey="Odia T" first="Trust" last="Odia">Trust Odia</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Okafor, Adaobi" sort="Okafor, Adaobi" uniqKey="Okafor A" first="Adaobi" last="Okafor">Adaobi Okafor</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Oladipo, Olaleye" sort="Oladipo, Olaleye" uniqKey="Oladipo O" first="Olaleye" last="Oladipo">Olaleye Oladipo</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A19">Directorate, Center for System and Information Service, Landmark University, Omu-Aran, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Osamor, Victor" sort="Osamor, Victor" uniqKey="Osamor V" first="Victor" last="Osamor">Victor Osamor</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Oyelade, Jellili" sort="Oyelade, Jellili" uniqKey="Oyelade J" first="Jellili" last="Oyelade">Jellili Oyelade</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sadki, Khalid" sort="Sadki, Khalid" uniqKey="Sadki K" first="Khalid" last="Sadki">Khalid Sadki</name>
<affiliation><nlm:aff id="A20">School of Sciences, Mohammed V University of Rabat, 4, Av. Ibn battouta, BP1014 Rabat-Morocco;<email>ksadki1@yahoo.fr</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Salifu, Samson Pandam" sort="Salifu, Samson Pandam" uniqKey="Salifu S" first="Samson Pandam" last="Salifu">Samson Pandam Salifu</name>
<affiliation><nlm:aff id="A21">Department of Biochemistry and Biotechnology, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.<email>sspas@hotmail.com</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A22">Kumasi Centre for Collaborative Research, South End Asougya Road, KNUST Campus, Kumasi, Ghana</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Soyemi, Jumoke" sort="Soyemi, Jumoke" uniqKey="Soyemi J" first="Jumoke" last="Soyemi">Jumoke Soyemi</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A23">Department of Computer Science, Ilaro Polytechnic, Ilaro, Ogun State, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Panji, Sumir" sort="Panji, Sumir" uniqKey="Panji S" first="Sumir" last="Panji">Sumir Panji</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Radouani, Fouzia" sort="Radouani, Fouzia" uniqKey="Radouani F" first="Fouzia" last="Radouani">Fouzia Radouani</name>
<affiliation><nlm:aff id="A24">Chlamydiae and Mycoplasma laboratory, Institut Pasteur du Maroc, Morocco</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Souiai, Oussama" sort="Souiai, Oussama" uniqKey="Souiai O" first="Oussama" last="Souiai">Oussama Souiai</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Tastan Bishop, Ozlem" sort="Tastan Bishop, Ozlem" uniqKey="Tastan Bishop O" first="Özlem" last="Tastan Bishop">Özlem Tastan Bishop</name>
<affiliation><nlm:aff id="A11">Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa</nlm:aff>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PMC</idno>
<idno type="pmid">28302555</idno>
<idno type="pmc">5582980</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5582980</idno>
<idno type="RBID">PMC:5582980</idno>
<idno type="doi">10.1016/j.gheart.2017.01.005</idno>
<date when="2017">2017</date>
<idno type="wicri:Area/Pmc/Corpus">000146</idno>
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</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Development of Bioinformatics Infrastructure for Genomics Research in H3Africa</title>
<author><name sortKey="Mulder, Nicola J" sort="Mulder, Nicola J" uniqKey="Mulder N" first="Nicola J" last="Mulder">Nicola J. Mulder</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Adebiyi, Ezekiel" sort="Adebiyi, Ezekiel" uniqKey="Adebiyi E" first="Ezekiel" last="Adebiyi">Ezekiel Adebiyi</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Adebiyi, Marion" sort="Adebiyi, Marion" uniqKey="Adebiyi M" first="Marion" last="Adebiyi">Marion Adebiyi</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Adeyemi, Seun" sort="Adeyemi, Seun" uniqKey="Adeyemi S" first="Seun" last="Adeyemi">Seun Adeyemi</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A4">Center for System and Information Service, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ahmed, Azza" sort="Ahmed, Azza" uniqKey="Ahmed A" first="Azza" last="Ahmed">Azza Ahmed</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ahmed, Rehab" sort="Ahmed, Rehab" uniqKey="Ahmed R" first="Rehab" last="Ahmed">Rehab Ahmed</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Akanle, Bola" sort="Akanle, Bola" uniqKey="Akanle B" first="Bola" last="Akanle">Bola Akanle</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A4">Center for System and Information Service, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Alibi, Mohamed" sort="Alibi, Mohamed" uniqKey="Alibi M" first="Mohamed" last="Alibi">Mohamed Alibi</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Armstrong, Don L" sort="Armstrong, Don L" uniqKey="Armstrong D" first="Don L" last="Armstrong">Don L. Armstrong</name>
<affiliation><nlm:aff id="A7">Institute for Genomic Biology, University of Illinois at Urbana-Champaign, USA;<email>don@donarmstrong.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Aron, Shaun" sort="Aron, Shaun" uniqKey="Aron S" first="Shaun" last="Aron">Shaun Aron</name>
<affiliation><nlm:aff id="A8">Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, South Africa;<email>shaun.aron@gmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ashano, Efejiro" sort="Ashano, Efejiro" uniqKey="Ashano E" first="Efejiro" last="Ashano">Efejiro Ashano</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A9">H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Baichoo, Shakuntala" sort="Baichoo, Shakuntala" uniqKey="Baichoo S" first="Shakuntala" last="Baichoo">Shakuntala Baichoo</name>
<affiliation><nlm:aff id="A10">University of Mauritius, Mauritius</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Benkahla, Alia" sort="Benkahla, Alia" uniqKey="Benkahla A" first="Alia" last="Benkahla">Alia Benkahla</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Brown, David K" sort="Brown, David K" uniqKey="Brown D" first="David K" last="Brown">David K. Brown</name>
<affiliation><nlm:aff id="A11">Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Chimusa, Emile R" sort="Chimusa, Emile R" uniqKey="Chimusa E" first="Emile R." last="Chimusa">Emile R. Chimusa</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A12">Division of Human Genetics, Department of Pathology, Faculty of Health Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Fadlelmola, Faisal M" sort="Fadlelmola, Faisal M" uniqKey="Fadlelmola F" first="Faisal M." last="Fadlelmola">Faisal M. Fadlelmola</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A13">Future University of Sudan, P.O. Box 10553 Khartoum, Sudan</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Falola, Dare" sort="Falola, Dare" uniqKey="Falola D" first="Dare" last="Falola">Dare Falola</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Fatumo, Segun" sort="Fatumo, Segun" uniqKey="Fatumo S" first="Segun" last="Fatumo">Segun Fatumo</name>
<affiliation><nlm:aff id="A9">H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ghedira, Kais" sort="Ghedira, Kais" uniqKey="Ghedira K" first="Kais" last="Ghedira">Kais Ghedira</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Ghouila, Amel" sort="Ghouila, Amel" uniqKey="Ghouila A" first="Amel" last="Ghouila">Amel Ghouila</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Hazelhurst, Scott" sort="Hazelhurst, Scott" uniqKey="Hazelhurst S" first="Scott" last="Hazelhurst">Scott Hazelhurst</name>
<affiliation><nlm:aff id="A8">Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, South Africa;<email>shaun.aron@gmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Isewon, Iunu" sort="Isewon, Iunu" uniqKey="Isewon I" first="Iunu" last="Isewon">Iunu Isewon</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Jung, Segun" sort="Jung, Segun" uniqKey="Jung S" first="Segun" last="Jung">Segun Jung</name>
<affiliation><nlm:aff id="A15">Computation Institute, University of Chicago and Argonne National Laboratory;<email>sjung1@uchicago.edu</email>
;<email>arodri7@uchicago.edu</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kassim, Samar Kamal" sort="Kassim, Samar Kamal" uniqKey="Kassim S" first="Samar Kamal" last="Kassim">Samar Kamal Kassim</name>
<affiliation><nlm:aff id="A16">Medical Biochemistry Department, Faculty of Medicine, Ain Shams University, Abbaseya, Cairo, Egypt, 11591</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Kayondo, Jonathan K" sort="Kayondo, Jonathan K" uniqKey="Kayondo J" first="Jonathan K" last="Kayondo">Jonathan K. Kayondo</name>
<affiliation><nlm:aff id="A17">Uganda Virus Research Institute (UVRI), Entebbe Uganda;<email>jkayondo@gmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mbiyavanga, Mamana" sort="Mbiyavanga, Mamana" uniqKey="Mbiyavanga M" first="Mamana" last="Mbiyavanga">Mamana Mbiyavanga</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Meintjes, Ayton" sort="Meintjes, Ayton" uniqKey="Meintjes A" first="Ayton" last="Meintjes">Ayton Meintjes</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mohammed, Somia" sort="Mohammed, Somia" uniqKey="Mohammed S" first="Somia" last="Mohammed">Somia Mohammed</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mosaku, Abayomi" sort="Mosaku, Abayomi" uniqKey="Mosaku A" first="Abayomi" last="Mosaku">Abayomi Mosaku</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Moussa, Ahmed" sort="Moussa, Ahmed" uniqKey="Moussa A" first="Ahmed" last="Moussa">Ahmed Moussa</name>
<affiliation><nlm:aff id="A18">LAbTIC Laboratory, ENSA, Abdelmalek Essaadi University, Tangier, Morocco</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Muhammd, Mustafa" sort="Muhammd, Mustafa" uniqKey="Muhammd M" first="Mustafa" last="Muhammd">Mustafa Muhammd</name>
<affiliation><nlm:aff id="A5">Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Mungloo Dilmohamud, Zahra" sort="Mungloo Dilmohamud, Zahra" uniqKey="Mungloo Dilmohamud Z" first="Zahra" last="Mungloo-Dilmohamud">Zahra Mungloo-Dilmohamud</name>
<affiliation><nlm:aff id="A10">University of Mauritius, Mauritius</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Nashiru, Oyekanmi" sort="Nashiru, Oyekanmi" uniqKey="Nashiru O" first="Oyekanmi" last="Nashiru">Oyekanmi Nashiru</name>
<affiliation><nlm:aff id="A9">H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Odia, Trust" sort="Odia, Trust" uniqKey="Odia T" first="Trust" last="Odia">Trust Odia</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Okafor, Adaobi" sort="Okafor, Adaobi" uniqKey="Okafor A" first="Adaobi" last="Okafor">Adaobi Okafor</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Oladipo, Olaleye" sort="Oladipo, Olaleye" uniqKey="Oladipo O" first="Olaleye" last="Oladipo">Olaleye Oladipo</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A19">Directorate, Center for System and Information Service, Landmark University, Omu-Aran, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Osamor, Victor" sort="Osamor, Victor" uniqKey="Osamor V" first="Victor" last="Osamor">Victor Osamor</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Oyelade, Jellili" sort="Oyelade, Jellili" uniqKey="Oyelade J" first="Jellili" last="Oyelade">Jellili Oyelade</name>
<affiliation><nlm:aff id="A2">Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Sadki, Khalid" sort="Sadki, Khalid" uniqKey="Sadki K" first="Khalid" last="Sadki">Khalid Sadki</name>
<affiliation><nlm:aff id="A20">School of Sciences, Mohammed V University of Rabat, 4, Av. Ibn battouta, BP1014 Rabat-Morocco;<email>ksadki1@yahoo.fr</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Salifu, Samson Pandam" sort="Salifu, Samson Pandam" uniqKey="Salifu S" first="Samson Pandam" last="Salifu">Samson Pandam Salifu</name>
<affiliation><nlm:aff id="A21">Department of Biochemistry and Biotechnology, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.<email>sspas@hotmail.com</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A22">Kumasi Centre for Collaborative Research, South End Asougya Road, KNUST Campus, Kumasi, Ghana</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Soyemi, Jumoke" sort="Soyemi, Jumoke" uniqKey="Soyemi J" first="Jumoke" last="Soyemi">Jumoke Soyemi</name>
<affiliation><nlm:aff id="A3">Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</nlm:aff>
</affiliation>
<affiliation><nlm:aff id="A23">Department of Computer Science, Ilaro Polytechnic, Ilaro, Ogun State, Nigeria</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Panji, Sumir" sort="Panji, Sumir" uniqKey="Panji S" first="Sumir" last="Panji">Sumir Panji</name>
<affiliation><nlm:aff id="A1">Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Radouani, Fouzia" sort="Radouani, Fouzia" uniqKey="Radouani F" first="Fouzia" last="Radouani">Fouzia Radouani</name>
<affiliation><nlm:aff id="A24">Chlamydiae and Mycoplasma laboratory, Institut Pasteur du Maroc, Morocco</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Souiai, Oussama" sort="Souiai, Oussama" uniqKey="Souiai O" first="Oussama" last="Souiai">Oussama Souiai</name>
<affiliation><nlm:aff id="A6">Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</nlm:aff>
</affiliation>
</author>
<author><name sortKey="Tastan Bishop, Ozlem" sort="Tastan Bishop, Ozlem" uniqKey="Tastan Bishop O" first="Özlem" last="Tastan Bishop">Özlem Tastan Bishop</name>
<affiliation><nlm:aff id="A11">Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa</nlm:aff>
</affiliation>
</author>
</analytic>
<series><title level="j">Global heart</title>
<idno type="ISSN">2211-8160</idno>
<idno type="eISSN">2211-8179</idno>
<imprint><date when="2017">2017</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><sec id="S1"><title>Background and objectives</title>
<p id="P1">Although pockets of bioinformatics excellence have developed in Africa, generally, large-scale genomic data analysis has been limited by the availability of expertise and infrastructure. H3ABioNet, a Pan African bioinformatics network, was established to build capacity specifically to enable H3Africa researchers to analyse their data in Africa. Since the inception of the H3Africa initiative, H3ABioNet’s role has evolved in response to changing needs from the consortium and the African bioinformatics community. The network set out to develop core bioinformatics infrastructure and capacity for genomics research in various aspects of data collection, transfer, storage and analysis.</p>
</sec>
<sec id="S2"><title>Methods and results</title>
<p id="P2">Various resources have been developed to address genomic data management and analysis needs of H3Africa researchers and other scientific communities on the continent. NetMap was developed and used to build an accurate picture of network performance within Africa and between Africa and the rest of the world, and Globus Online has been rolled out to facilitate data transfer. A participant recruitment database was developed to monitor participant enrolment, and data is being harmonized through the use of ontologies and controlled vocabularies. The standardized metadata will be integrated to provide a search facility for H3Africa data and biospecimens. Since H3Africa projects are generating large-scale genomic data, facilities for analysis and interpretation are critical. H3ABioNet is implementing several data analysis platforms that provide a large range of bioinformatics tools or workflows, such as Galaxy, the Job Management System and eBiokits. A set of reproducible, portable and cloud scalable pipelines to support the multiple H3Africa data types are also being developed and dockerized to enable execution on multiple computing infrastructures. In addition, new tools have been developed for analysis of the uniquely divergent African data and for downstream interpretation of prioritized variants. To provide support for these and other bioinformatics queries, an online bioinformatics helpdesk backed by broad consortium expertise has been established. Further support is provided by means of various modes of bioinformatics training.</p>
</sec>
<sec id="S3"><title>Conclusion</title>
<p id="P3">For the past 4 years, the development of infrastructure support and human capacity through H3ABioNet, have significantly contributed to the establishment of African scientific networks, data analysis facilities and training programmes. Here, we describe the infrastructure and how it has impacted genomics and bioinformatics research in Africa.</p>
</sec>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">101584391</journal-id>
<journal-id journal-id-type="pubmed-jr-id">40494</journal-id>
<journal-id journal-id-type="nlm-ta">Glob Heart</journal-id>
<journal-id journal-id-type="iso-abbrev">Glob Heart</journal-id>
<journal-title-group><journal-title>Global heart</journal-title>
</journal-title-group>
<issn pub-type="ppub">2211-8160</issn>
<issn pub-type="epub">2211-8179</issn>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">28302555</article-id>
<article-id pub-id-type="pmc">5582980</article-id>
<article-id pub-id-type="doi">10.1016/j.gheart.2017.01.005</article-id>
<article-id pub-id-type="manuscript">NIHMS844260</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
</subj-group>
</article-categories>
<title-group><article-title>Development of Bioinformatics Infrastructure for Genomics Research in H3Africa</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Mulder</surname>
<given-names>Nicola J</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Adebiyi</surname>
<given-names>Ezekiel</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Adebiyi</surname>
<given-names>Marion</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Adeyemi</surname>
<given-names>Seun</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
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<xref ref-type="aff" rid="A5">5</xref>
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<given-names>Rehab</given-names>
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</contrib>
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<given-names>Bola</given-names>
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</contrib>
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<contrib contrib-type="author"><name><surname>Baichoo</surname>
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</contrib>
<contrib contrib-type="author"><name><surname>Benkahla</surname>
<given-names>Alia</given-names>
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</contrib>
<contrib contrib-type="author"><name><surname>Brown</surname>
<given-names>David K</given-names>
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</contrib>
<contrib contrib-type="author"><name><surname>Chimusa</surname>
<given-names>Emile R.</given-names>
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<given-names>Faisal M.</given-names>
</name>
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</contrib>
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<given-names>Dare</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Fatumo</surname>
<given-names>Segun</given-names>
</name>
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</contrib>
<contrib contrib-type="author"><name><surname>Ghedira</surname>
<given-names>Kais</given-names>
</name>
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</contrib>
<contrib contrib-type="author"><name><surname>Ghouila</surname>
<given-names>Amel</given-names>
</name>
<xref ref-type="aff" rid="A6">6</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Hazelhurst</surname>
<given-names>Scott</given-names>
</name>
<xref ref-type="aff" rid="A8">8</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Isewon</surname>
<given-names>Iunu</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Jung</surname>
<given-names>Segun</given-names>
</name>
<xref ref-type="aff" rid="A15">15</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Kassim</surname>
<given-names>Samar Kamal</given-names>
</name>
<xref ref-type="aff" rid="A16">16</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Kayondo</surname>
<given-names>Jonathan K</given-names>
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<xref ref-type="aff" rid="A17">17</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Mbiyavanga</surname>
<given-names>Mamana</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Meintjes</surname>
<given-names>Ayton</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Mohammed</surname>
<given-names>Somia</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
</contrib>
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<given-names>Abayomi</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
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<given-names>Ahmed</given-names>
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<xref ref-type="aff" rid="A18">18</xref>
</contrib>
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<given-names>Mustafa</given-names>
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<xref ref-type="aff" rid="A5">5</xref>
</contrib>
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<given-names>Zahra</given-names>
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<xref ref-type="aff" rid="A10">10</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Nashiru</surname>
<given-names>Oyekanmi</given-names>
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</contrib>
<contrib contrib-type="author"><name><surname>Odia</surname>
<given-names>Trust</given-names>
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<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Okafor</surname>
<given-names>Adaobi</given-names>
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<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Oladipo</surname>
<given-names>Olaleye</given-names>
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<xref ref-type="aff" rid="A3">3</xref>
<xref ref-type="aff" rid="A19">19</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Osamor</surname>
<given-names>Victor</given-names>
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<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Oyelade</surname>
<given-names>Jellili</given-names>
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<xref ref-type="aff" rid="A2">2</xref>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Sadki</surname>
<given-names>Khalid</given-names>
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<xref ref-type="aff" rid="A20">20</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Salifu</surname>
<given-names>Samson Pandam</given-names>
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<xref ref-type="aff" rid="A21">21</xref>
<xref ref-type="aff" rid="A22">22</xref>
</contrib>
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<xref ref-type="aff" rid="A3">3</xref>
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</contrib>
<contrib contrib-type="author"><name><surname>Panji</surname>
<given-names>Sumir</given-names>
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<xref ref-type="aff" rid="A1">1</xref>
</contrib>
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<given-names>Fouzia</given-names>
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<xref ref-type="aff" rid="A24">24</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Souiai</surname>
<given-names>Oussama</given-names>
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<xref ref-type="aff" rid="A6">6</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Tastan Bishop</surname>
<given-names>Özlem</given-names>
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<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author"><collab>The H3ABioNet Consortium, as members of the H3Africa consortium</collab>
</contrib>
</contrib-group>
<aff id="A1"><label>1</label>
Computational Biology Division, Department of Integrative Biomedical Sciences, Institute for Infectious Disease and Molecular Medicine, University of Cape Town, South Africa;<email>Nicola.mulder@uct.ac.za</email>
;<email>emile.chimusa@uct.ac.za</email>
,<email>mbymam001@myuct.ac.za</email>
,<email>aytonm@gmail.com</email>
;<email>sumir.panji@uct.ac.za</email>
</aff>
<aff id="A2"><label>2</label>
Department of Computer and Information Sciences, Covenant University, Ota, Nigeria</aff>
<aff id="A3"><label>3</label>
Covenant University Bioinformatics Research (CUBRe), Covenant University, Ota, Nigeria;<email>ezekiel.adebiyi@covenantuniversity.edu.ng</email>
</aff>
<aff id="A4"><label>4</label>
Center for System and Information Service, Covenant University, Ota, Nigeria</aff>
<aff id="A5"><label>5</label>
Centre for Bioinformatics and Systems Biology, Faculty of Science, University of Khartoum, P.O. Box 321 Khartoum, Postal Code 11115 Sudan;<email>azzaea@gmail.com</email>
;<email>rehabbashaaree@gmail.com</email>
;<email>faisal.mohamed@hotmail.com</email>
</aff>
<aff id="A6"><label>6</label>
Laboratory of Bioinformatics, bioMathematics and bioStatistics (BIMS), Institut Pasteur de Tunis, Tunis, 1002; Université de Tunis El Manar, Tunis, 1036, Tunisia;<email>alibimohamed@gmail.com</email>
,<email>kais.ghedira@pasteur.tn</email>
,<email>oussema.souiai@pasteur.tn</email>
,<email>alia.benkahla@pasteur.tn</email>
</aff>
<aff id="A7"><label>7</label>
Institute for Genomic Biology, University of Illinois at Urbana-Champaign, USA;<email>don@donarmstrong.com</email>
</aff>
<aff id="A8"><label>8</label>
Sydney Brenner Institute for Molecular Bioscience, University of the Witwatersrand, South Africa;<email>shaun.aron@gmail.com</email>
</aff>
<aff id="A9"><label>9</label>
H3Africa Bioinformatics Network (H3ABioNet) Node, National Biotechnology Development Agency (NABDA), Federal Ministry of Science and Technology (FMST) Abuja, Nigeria</aff>
<aff id="A10"><label>10</label>
University of Mauritius, Mauritius</aff>
<aff id="A11"><label>11</label>
Research Unit in Bioinformatics (RUBi), Department of Biochemistry and Microbiology, Rhodes University, Grahamstown, South Africa</aff>
<aff id="A12"><label>12</label>
Division of Human Genetics, Department of Pathology, Faculty of Health Sciences, Institute of Infectious Disease and Molecular Medicine, University of Cape Town, Cape Town, South Africa</aff>
<aff id="A13"><label>13</label>
Future University of Sudan, P.O. Box 10553 Khartoum, Sudan</aff>
<aff id="A14"><label>14</label>
Institut Pasteur de Tunis, LR11IPT02, Laboratory of Transmission, Control and Immunobiology of Infections (LTCII), Tunis-Belvédère, 1002, Tunisia;<email>amel.ghouila@gmail.com</email>
</aff>
<aff id="A15"><label>15</label>
Computation Institute, University of Chicago and Argonne National Laboratory;<email>sjung1@uchicago.edu</email>
;<email>arodri7@uchicago.edu</email>
</aff>
<aff id="A16"><label>16</label>
Medical Biochemistry Department, Faculty of Medicine, Ain Shams University, Abbaseya, Cairo, Egypt, 11591</aff>
<aff id="A17"><label>17</label>
Uganda Virus Research Institute (UVRI), Entebbe Uganda;<email>jkayondo@gmail.com</email>
</aff>
<aff id="A18"><label>18</label>
LAbTIC Laboratory, ENSA, Abdelmalek Essaadi University, Tangier, Morocco</aff>
<aff id="A19"><label>19</label>
Directorate, Center for System and Information Service, Landmark University, Omu-Aran, Nigeria</aff>
<aff id="A20"><label>20</label>
School of Sciences, Mohammed V University of Rabat, 4, Av. Ibn battouta, BP1014 Rabat-Morocco;<email>ksadki1@yahoo.fr</email>
</aff>
<aff id="A21"><label>21</label>
Department of Biochemistry and Biotechnology, Kwame Nkrumah University of Science and Technology, Kumasi, Ghana.<email>sspas@hotmail.com</email>
</aff>
<aff id="A22"><label>22</label>
Kumasi Centre for Collaborative Research, South End Asougya Road, KNUST Campus, Kumasi, Ghana</aff>
<aff id="A23"><label>23</label>
Department of Computer Science, Ilaro Polytechnic, Ilaro, Ogun State, Nigeria</aff>
<aff id="A24"><label>24</label>
Chlamydiae and Mycoplasma laboratory, Institut Pasteur du Maroc, Morocco</aff>
<author-notes><corresp id="cor1"><bold>Corresponding author</bold>
: Nicola J Mulder</corresp>
</author-notes>
<pub-date pub-type="nihms-submitted"><day>25</day>
<month>1</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="epub"><day>13</day>
<month>3</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="ppub"><month>6</month>
<year>2017</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>01</day>
<month>6</month>
<year>2018</year>
</pub-date>
<volume>12</volume>
<issue>2</issue>
<fpage>91</fpage>
<lpage>98</lpage>
<pmc-comment>elocation-id from pubmed: 10.1016/j.gheart.2017.01.005</pmc-comment>
<abstract><sec id="S1"><title>Background and objectives</title>
<p id="P1">Although pockets of bioinformatics excellence have developed in Africa, generally, large-scale genomic data analysis has been limited by the availability of expertise and infrastructure. H3ABioNet, a Pan African bioinformatics network, was established to build capacity specifically to enable H3Africa researchers to analyse their data in Africa. Since the inception of the H3Africa initiative, H3ABioNet’s role has evolved in response to changing needs from the consortium and the African bioinformatics community. The network set out to develop core bioinformatics infrastructure and capacity for genomics research in various aspects of data collection, transfer, storage and analysis.</p>
</sec>
<sec id="S2"><title>Methods and results</title>
<p id="P2">Various resources have been developed to address genomic data management and analysis needs of H3Africa researchers and other scientific communities on the continent. NetMap was developed and used to build an accurate picture of network performance within Africa and between Africa and the rest of the world, and Globus Online has been rolled out to facilitate data transfer. A participant recruitment database was developed to monitor participant enrolment, and data is being harmonized through the use of ontologies and controlled vocabularies. The standardized metadata will be integrated to provide a search facility for H3Africa data and biospecimens. Since H3Africa projects are generating large-scale genomic data, facilities for analysis and interpretation are critical. H3ABioNet is implementing several data analysis platforms that provide a large range of bioinformatics tools or workflows, such as Galaxy, the Job Management System and eBiokits. A set of reproducible, portable and cloud scalable pipelines to support the multiple H3Africa data types are also being developed and dockerized to enable execution on multiple computing infrastructures. In addition, new tools have been developed for analysis of the uniquely divergent African data and for downstream interpretation of prioritized variants. To provide support for these and other bioinformatics queries, an online bioinformatics helpdesk backed by broad consortium expertise has been established. Further support is provided by means of various modes of bioinformatics training.</p>
</sec>
<sec id="S3"><title>Conclusion</title>
<p id="P3">For the past 4 years, the development of infrastructure support and human capacity through H3ABioNet, have significantly contributed to the establishment of African scientific networks, data analysis facilities and training programmes. Here, we describe the infrastructure and how it has impacted genomics and bioinformatics research in Africa.</p>
</sec>
</abstract>
</article-meta>
</front>
</pmc>
</record>
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