The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
Identifieur interne : 000320 ( Pmc/Checkpoint ); précédent : 000319; suivant : 000321The mitochondrial genomes of Atlas Geckos (Quedenfeldtia): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets
Auteurs : Mariana L. Lyra [Brésil] ; Ulrich Joger [Allemagne] ; Ulrich Schulte [Allemagne] ; Tahar Slimani [Maroc] ; El Hassan El Mouden [Maroc] ; Abdellah Bouazza [Maroc] ; Sven Künzel [Allemagne] ; Alan R. Lemmon [États-Unis] ; Emily Moriarty Lemmon [États-Unis] ; Miguel Vences [Allemagne]Source :
- Mitochondrial DNA. Part B, Resources [ 2380-2359 ] ; ????.
Abstract
The nearly complete mitogenomes of the two species of North African Atlas geckos,
Url:
DOI: 10.1080/23802359.2017.1339212
PubMed: 33473826
PubMed Central: 7800026
Affiliations:
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PMC:7800026Le document en format XML
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<author><name sortKey="Vences, Miguel" sort="Vences, Miguel" uniqKey="Vences M" first="Miguel" last="Vences">Miguel Vences</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The mitochondrial genomes of Atlas Geckos (<italic>Quedenfeldtia</italic>
): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets</title>
<author><name sortKey="Lyra, Mariana L" sort="Lyra, Mariana L" uniqKey="Lyra M" first="Mariana L." last="Lyra">Mariana L. Lyra</name>
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<country xml:lang="fr">Brésil</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Joger, Ulrich" sort="Joger, Ulrich" uniqKey="Joger U" first="Ulrich" last="Joger">Ulrich Joger</name>
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,<city>Braunschweig</city>
,<country>Germany</country>
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<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Schulte, Ulrich" sort="Schulte, Ulrich" uniqKey="Schulte U" first="Ulrich" last="Schulte">Ulrich Schulte</name>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Slimani, Tahar" sort="Slimani, Tahar" uniqKey="Slimani T" first="Tahar" last="Slimani">Tahar Slimani</name>
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,<city>Marrakech</city>
,<country>Morocco</country>
;</nlm:aff>
<country xml:lang="fr">Maroc</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="El Mouden, El Hassan" sort="El Mouden, El Hassan" uniqKey="El Mouden E" first="El Hassan" last="El Mouden">El Hassan El Mouden</name>
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,<city>Marrakech</city>
,<country>Morocco</country>
;</nlm:aff>
<country xml:lang="fr">Maroc</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
</affiliation>
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<author><name sortKey="Bouazza, Abdellah" sort="Bouazza, Abdellah" uniqKey="Bouazza A" first="Abdellah" last="Bouazza">Abdellah Bouazza</name>
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,<city>Marrakech</city>
,<country>Morocco</country>
;</nlm:aff>
<country xml:lang="fr">Maroc</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Kunzel, Sven" sort="Kunzel, Sven" uniqKey="Kunzel S" first="Sven" last="Künzel">Sven Künzel</name>
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,<city>Plön</city>
,<country>Germany</country>
;</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Lemmon, Alan R" sort="Lemmon, Alan R" uniqKey="Lemmon A" first="Alan R." last="Lemmon">Alan R. Lemmon</name>
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,<state>FL</state>
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;</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Lemmon, Emily Moriarty" sort="Lemmon, Emily Moriarty" uniqKey="Lemmon E" first="Emily Moriarty" last="Lemmon">Emily Moriarty Lemmon</name>
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,<state>FL</state>
,<country>USA</country>
;</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<author><name sortKey="Vences, Miguel" sort="Vences, Miguel" uniqKey="Vences M" first="Miguel" last="Vences">Miguel Vences</name>
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,<country>Germany</country>
</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea># see nlm:aff country strict</wicri:regionArea>
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<series><title level="j">Mitochondrial DNA. Part B, Resources</title>
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<front><div type="abstract" xml:lang="en"><title>Abstract</title>
<p>The nearly complete mitogenomes of the two species of North African Atlas geckos, <italic>Quedenfeldtia moerens</italic>
and <italic>Q. trachyblepharus</italic>
were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.</p>
</div>
</front>
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<pmc article-type="research-article"><pmc-dir>properties open_access</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-ta">Mitochondrial DNA B Resour</journal-id>
<journal-id journal-id-type="iso-abbrev">Mitochondrial DNA B Resour</journal-id>
<journal-title-group><journal-title>Mitochondrial DNA. Part B, Resources</journal-title>
</journal-title-group>
<issn pub-type="epub">2380-2359</issn>
<publisher><publisher-name>Taylor & Francis</publisher-name>
</publisher>
</journal-meta>
<article-meta><article-id pub-id-type="pmid">33473826</article-id>
<article-id pub-id-type="pmc">7800026</article-id>
<article-id pub-id-type="doi">10.1080/23802359.2017.1339212</article-id>
<article-id pub-id-type="publisher-id">1339212</article-id>
<article-version vocab="JAV" vocab-identifier="http://www.niso.org/publications/rp/RP-8-2008.pdf" vocab-term="Version of Record" article-version-type="VoR">Version of Record</article-version>
<article-categories><subj-group subj-group-type="article-type"><subject>Research Article</subject>
</subj-group>
<subj-group subj-group-type="heading"><subject>Mito Communication</subject>
</subj-group>
</article-categories>
<title-group><article-title>The mitochondrial genomes of Atlas Geckos (<italic>Quedenfeldtia</italic>
): mitogenome assembly from transcriptomes and anchored hybrid enrichment datasets</article-title>
<alt-title alt-title-type="left-running-head">M. L. Lyra et al.</alt-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Lyra</surname>
<given-names>Mariana L.</given-names>
</name>
<xref ref-type="aff" rid="AF0001">a</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Joger</surname>
<given-names>Ulrich</given-names>
</name>
<xref ref-type="aff" rid="AF0002">b</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Schulte</surname>
<given-names>Ulrich</given-names>
</name>
<xref ref-type="aff" rid="AF0003">c</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Slimani</surname>
<given-names>Tahar</given-names>
</name>
<xref ref-type="aff" rid="AF0004">d</xref>
</contrib>
<contrib contrib-type="author"><name><surname>El Mouden</surname>
<given-names>El Hassan</given-names>
</name>
<xref ref-type="aff" rid="AF0004">d</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Bouazza</surname>
<given-names>Abdellah</given-names>
</name>
<xref ref-type="aff" rid="AF0004">d</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Künzel</surname>
<given-names>Sven</given-names>
</name>
<xref ref-type="aff" rid="AF0005">e</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Lemmon</surname>
<given-names>Alan R.</given-names>
</name>
<xref ref-type="aff" rid="AF0006">f</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Lemmon</surname>
<given-names>Emily Moriarty</given-names>
</name>
<xref ref-type="aff" rid="AF0007">g</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Vences</surname>
<given-names>Miguel</given-names>
</name>
<xref ref-type="aff" rid="AF0008">h</xref>
<xref ref-type="corresp" rid="AN0001"></xref>
</contrib>
<aff id="AF0001"><label>a</label>
<institution>Departamento de Zoologia, Instituto de Biociências, UNESP – Universidade Estadual Paulista</institution>
,<city>Rio Claro</city>
,<country>Brazil</country>
;</aff>
<aff id="AF0002"><label>b</label>
<institution>Staatliches Naturhistorisches Museum</institution>
,<city>Braunschweig</city>
,<country>Germany</country>
;</aff>
<aff id="AF0003"><label>c</label>
<institution>Büro für Faunistische Gutachten</institution>
,<city>Borgholzhausen</city>
,<country>Germany</country>
;</aff>
<aff id="AF0004"><label>d</label>
<institution>Faculty of Sciences, Biodiversity and Ecosystem Dynamics Laboratory, Cadi Ayyad University</institution>
,<city>Marrakech</city>
,<country>Morocco</country>
;</aff>
<aff id="AF0005"><label>e</label>
<institution>Max Planck Institute for Evolutionary Biology</institution>
,<city>Plön</city>
,<country>Germany</country>
;</aff>
<aff id="AF0006"><label>f</label>
<institution>Department of Scientific Computing, Florida State University, Dirac Science Library</institution>
,<city>Tallahassee</city>
,<state>FL</state>
,<country>USA</country>
;</aff>
<aff id="AF0007"><label>g</label>
<institution>Department of Biological Science, Florida State University</institution>
,<city>Tallahassee</city>
,<state>FL</state>
,<country>USA</country>
;</aff>
<aff id="AF0008"><label>h</label>
<institution>Zoological Institute, Technical University of Braunschweig</institution>
,<city>Braunschweig</city>
,<country>Germany</country>
</aff>
</contrib-group>
<author-notes><corresp id="AN0001">CONTACT <addr-line>Miguel Vences</addr-line>
<x xml:space="preserve"> </x>
<email>m.vences@tu-bs.de</email>
<institution>Zoological Institute, Technical University of Braunschweig</institution>
<x xml:space="preserve">, </x>
<addr-line>Mendelssohnstr. 4</addr-line>
<x xml:space="preserve">, </x>
<city>Braunschweig</city>
<x xml:space="preserve">, </x>
<postal-code>38106</postal-code>
<x xml:space="preserve">, </x>
<country>Germany</country>
</corresp>
</author-notes>
<pub-date date-type="pub" publication-format="electronic"><day>14</day>
<month>6</month>
<year>2017</year>
</pub-date>
<pub-date date-type="collection" publication-format="electronic"><year>2017</year>
</pub-date>
<volume>2</volume>
<issue>1</issue>
<fpage seq="157">356</fpage>
<lpage>358</lpage>
<permissions><copyright-statement>© 2017 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.</copyright-statement>
<copyright-year>2017</copyright-year>
<copyright-holder>The Author(s).</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0/"><license-p>This is an Open Access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
<ali:license_ref specific-use="vor">http://creativecommons.org/licenses/by/4.0/</ali:license_ref>
</license>
</permissions>
<self-uri content-type="pdf" xlink:href="TMDN_2_1339212.pdf"></self-uri>
<abstract><title>Abstract</title>
<p>The nearly complete mitogenomes of the two species of North African Atlas geckos, <italic>Quedenfeldtia moerens</italic>
and <italic>Q. trachyblepharus</italic>
were assembled from anchored hybrid enrichment data and RNAseq data. Congruent assemblies were obtained for four samples included in both datasets. We recovered the 13 protein-coding genes, 22 tRNA genes, and two rRNA genes for both species, including partial control region. The order of genes agrees with that of other geckos.</p>
</abstract>
<kwd-group kwd-group-type="author"><title>Keywords</title>
<kwd>Squamata</kwd>
<kwd>Gekkota</kwd>
<kwd>Sphaerodactylidae</kwd>
<kwd><italic>Quedenfeldtia moerens</italic>
</kwd>
<kwd><italic>Quedenfeldtia trachyblepharus</italic>
</kwd>
<kwd>Morocco</kwd>
</kwd-group>
<counts><fig-count count="1"></fig-count>
<page-count count="3"></page-count>
<word-count count="2007"></word-count>
</counts>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Allemagne</li>
<li>Brésil</li>
<li>Maroc</li>
<li>États-Unis</li>
</country>
</list>
<tree><country name="Brésil"><noRegion><name sortKey="Lyra, Mariana L" sort="Lyra, Mariana L" uniqKey="Lyra M" first="Mariana L." last="Lyra">Mariana L. Lyra</name>
</noRegion>
</country>
<country name="Allemagne"><noRegion><name sortKey="Joger, Ulrich" sort="Joger, Ulrich" uniqKey="Joger U" first="Ulrich" last="Joger">Ulrich Joger</name>
</noRegion>
<name sortKey="Kunzel, Sven" sort="Kunzel, Sven" uniqKey="Kunzel S" first="Sven" last="Künzel">Sven Künzel</name>
<name sortKey="Schulte, Ulrich" sort="Schulte, Ulrich" uniqKey="Schulte U" first="Ulrich" last="Schulte">Ulrich Schulte</name>
<name sortKey="Vences, Miguel" sort="Vences, Miguel" uniqKey="Vences M" first="Miguel" last="Vences">Miguel Vences</name>
</country>
<country name="Maroc"><noRegion><name sortKey="Slimani, Tahar" sort="Slimani, Tahar" uniqKey="Slimani T" first="Tahar" last="Slimani">Tahar Slimani</name>
</noRegion>
<name sortKey="Bouazza, Abdellah" sort="Bouazza, Abdellah" uniqKey="Bouazza A" first="Abdellah" last="Bouazza">Abdellah Bouazza</name>
<name sortKey="El Mouden, El Hassan" sort="El Mouden, El Hassan" uniqKey="El Mouden E" first="El Hassan" last="El Mouden">El Hassan El Mouden</name>
</country>
<country name="États-Unis"><noRegion><name sortKey="Lemmon, Alan R" sort="Lemmon, Alan R" uniqKey="Lemmon A" first="Alan R." last="Lemmon">Alan R. Lemmon</name>
</noRegion>
<name sortKey="Lemmon, Emily Moriarty" sort="Lemmon, Emily Moriarty" uniqKey="Lemmon E" first="Emily Moriarty" last="Lemmon">Emily Moriarty Lemmon</name>
</country>
</tree>
</affiliations>
</record>
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