CCancer: a bird’s eye view on gene lists reported in cancer-related studies
Identifieur interne : 005999 ( Main/Exploration ); précédent : 005998; suivant : 005A00CCancer: a bird’s eye view on gene lists reported in cancer-related studies
Auteurs : Sabine Dietmann [Allemagne] ; Wanseon Lee [Allemagne] ; Philip Wong [Allemagne] ; Igor Rodchenkov [Canada] ; Alexey V. Antonov [Allemagne]Source :
- Nucleic Acids Research [ 0305-1048 ] ; 2010.
Abstract
CCancer is an automatically collected database of gene lists, which were reported mostly by experimental studies in various biological and clinical contexts. At the moment, the database covers 3369 gene lists extracted from 2644 papers published in ∼80 peer-reviewed journals. As input, CCancer accepts a gene list. An enrichment analyses is implemented to generate, as output, a highly informative survey over recently published studies that report gene lists, which significantly intersect with the query gene list. A report on gene pairs from the input list which were frequently reported together by other biological studies is also provided. CCancer is freely available at
Url:
DOI: 10.1093/nar/gkq515
PubMed: 20529879
PubMed Central: 2896190
Affiliations:
- Allemagne, Canada
- Bade-Wurtemberg, District de Fribourg-en-Brisgau, Ontario
- Fribourg-en-Brisgau, Toronto
- Université de Toronto
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 004228
- to stream Pmc, to step Curation: 004227
- to stream Pmc, to step Checkpoint: 003483
- to stream Ncbi, to step Merge: 003B57
- to stream Ncbi, to step Curation: 003B57
- to stream Ncbi, to step Checkpoint: 003B57
- to stream Main, to step Merge: 005A52
- to stream Main, to step Curation: 005999
Le document en format XML
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studies</title><author><name sortKey="Dietmann, Sabine" sort="Dietmann, Sabine" uniqKey="Dietmann S" first="Sabine" last="Dietmann">Sabine Dietmann</name><affiliation wicri:level="3"><nlm:aff id="AFF1">Freiburg Center for Data Analysis and Modeling, University of Freiburg, Eckerstr. 1, D-79104 Freiburg,</nlm:aff><country wicri:rule="zip">Allemagne</country><wicri:regionArea>Freiburg Center for Data Analysis and Modeling, University of Freiburg, Eckerstr. 1, D-79104 Freiburg</wicri:regionArea><placeName><region type="land" nuts="1">Bade-Wurtemberg</region><region type="district" nuts="2">District de Fribourg-en-Brisgau</region><settlement type="city">Fribourg-en-Brisgau</settlement></placeName></affiliation></author><author><name sortKey="Lee, Wanseon" sort="Lee, Wanseon" uniqKey="Lee W" first="Wanseon" last="Lee">Wanseon Lee</name><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="AFF1">Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg</wicri:regionArea><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>D-85764 Neuherberg</wicri:noRegion></affiliation></author><author><name sortKey="Wong, Philip" sort="Wong, Philip" uniqKey="Wong P" first="Philip" last="Wong">Philip Wong</name><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="AFF1">Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg</wicri:regionArea><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>D-85764 Neuherberg</wicri:noRegion></affiliation></author><author><name sortKey="Rodchenkov, Igor" sort="Rodchenkov, Igor" uniqKey="Rodchenkov I" first="Igor" last="Rodchenkov">Igor Rodchenkov</name><affiliation wicri:level="4"><nlm:aff id="AFF1">Faculty of Medicine, University of Toronto, BBDMR, CCBR, 160 College Street, Toronto, ON, Canada</nlm:aff><country xml:lang="fr">Canada</country><wicri:regionArea>Faculty of Medicine, University of Toronto, BBDMR, CCBR, 160 College Street, Toronto, ON</wicri:regionArea><orgName type="university">Université de Toronto</orgName><placeName><settlement type="city">Toronto</settlement><region type="state">Ontario</region></placeName></affiliation></author><author><name sortKey="Antonov, Alexey V" sort="Antonov, Alexey V" uniqKey="Antonov A" first="Alexey V." last="Antonov">Alexey V. Antonov</name><affiliation wicri:level="1"><nlm:aff wicri:cut=" and" id="AFF1">Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Helmholtz Center Munich, German Research Center for Environmental Health (GmbH), Institute for Bioinformatics and Systems Biology, Ingolstädter Landstraße 1, D-85764 Neuherberg</wicri:regionArea><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>85764 Neuherberg</wicri:noRegion><wicri:noRegion>D-85764 Neuherberg</wicri:noRegion></affiliation></author></analytic><series><title level="j">Nucleic Acids Research</title><idno type="ISSN">0305-1048</idno><idno type="eISSN">1362-4962</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>CCancer is an automatically collected database of gene lists, which were reported mostly by experimental studies in various biological and clinical contexts. At the moment, the database covers 3369 gene lists extracted from 2644 papers published in ∼80 peer-reviewed journals. As input, CCancer accepts a gene list. An enrichment analyses is implemented to generate, as output, a highly informative survey over recently published studies that report gene lists, which significantly intersect with the query gene list. A report on gene pairs from the input list which were frequently reported together by other biological studies is also provided. CCancer is freely available at <ext-link ext-link-type="uri" xlink:href="http://mips.helmholtz-muenchen.de/proj/ccancer">http://mips.helmholtz-muenchen.de/proj/ccancer</ext-link>.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Fernandes, Tg" uniqKey="Fernandes T">TG Fernandes</name></author><author><name sortKey="Diogo, Mm" uniqKey="Diogo M">MM Diogo</name></author><author><name sortKey="Clark, Ds" uniqKey="Clark D">DS Clark</name></author><author><name sortKey="Dordick, Js" uniqKey="Dordick J">JS Dordick</name></author><author><name sortKey="Cabral, Jm" uniqKey="Cabral J">JM Cabral</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Powell, Ak" uniqKey="Powell A">AK Powell</name></author><author><name sortKey="Zhi, Zl" uniqKey="Zhi Z">ZL Zhi</name></author><author><name sortKey="Turnbull, Je" uniqKey="Turnbull J">JE 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uniqKey="Antonov A">AV Antonov</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fernbach, Nv" uniqKey="Fernbach N">NV Fernbach</name></author><author><name sortKey="Planyavsky, M" uniqKey="Planyavsky M">M Planyavsky</name></author><author><name sortKey="Muller, A" uniqKey="Muller A">A Muller</name></author><author><name sortKey="Breitwieser, Fp" uniqKey="Breitwieser F">FP Breitwieser</name></author><author><name sortKey="Colinge, J" uniqKey="Colinge J">J Colinge</name></author><author><name sortKey="Rix, U" uniqKey="Rix U">U Rix</name></author><author><name sortKey="Bennett, Kl" uniqKey="Bennett K">KL Bennett</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Walters, Dk" uniqKey="Walters D">DK Walters</name></author><author><name sortKey="Goss, Vl" uniqKey="Goss V">VL Goss</name></author><author><name sortKey="Stoffregen, Ep" uniqKey="Stoffregen E">EP Stoffregen</name></author><author><name sortKey="Gu, Tl" uniqKey="Gu T">TL Gu</name></author><author><name sortKey="Lee, K" uniqKey="Lee K">K Lee</name></author><author><name sortKey="Nardone, J" uniqKey="Nardone J">J Nardone</name></author><author><name sortKey="Mcgreevey, L" uniqKey="Mcgreevey L">L McGreevey</name></author><author><name sortKey="Heinrich, Mc" uniqKey="Heinrich M">MC Heinrich</name></author><author><name sortKey="Deininger, Mw" uniqKey="Deininger M">MW Deininger</name></author><author><name sortKey="Polakiewicz, R" uniqKey="Polakiewicz R">R Polakiewicz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sticht, C" uniqKey="Sticht C">C Sticht</name></author><author><name sortKey="Freier, K" uniqKey="Freier K">K Freier</name></author><author><name sortKey="Knopfle, K" uniqKey="Knopfle K">K Knopfle</name></author><author><name sortKey="Flechtenmacher, C" uniqKey="Flechtenmacher C">C Flechtenmacher</name></author><author><name sortKey="Pungs, S" uniqKey="Pungs S">S Pungs</name></author><author><name sortKey="Hofele, C" uniqKey="Hofele C">C Hofele</name></author><author><name sortKey="Hahn, M" uniqKey="Hahn M">M Hahn</name></author><author><name sortKey="Joos, S" uniqKey="Joos S">S Joos</name></author><author><name sortKey="Lichter, P" uniqKey="Lichter P">P Lichter</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Canada</li></country><region><li>Bade-Wurtemberg</li><li>District de Fribourg-en-Brisgau</li><li>Ontario</li></region><settlement><li>Fribourg-en-Brisgau</li><li>Toronto</li></settlement><orgName><li>Université de Toronto</li></orgName></list><tree><country name="Allemagne"><region name="Bade-Wurtemberg"><name sortKey="Dietmann, Sabine" sort="Dietmann, Sabine" uniqKey="Dietmann S" first="Sabine" last="Dietmann">Sabine Dietmann</name></region><name sortKey="Antonov, Alexey V" sort="Antonov, Alexey V" uniqKey="Antonov A" first="Alexey V." last="Antonov">Alexey V. Antonov</name><name sortKey="Lee, Wanseon" sort="Lee, Wanseon" uniqKey="Lee W" first="Wanseon" last="Lee">Wanseon Lee</name><name sortKey="Wong, Philip" sort="Wong, Philip" uniqKey="Wong P" first="Philip" last="Wong">Philip Wong</name></country><country name="Canada"><region name="Ontario"><name sortKey="Rodchenkov, Igor" sort="Rodchenkov, Igor" uniqKey="Rodchenkov I" first="Igor" last="Rodchenkov">Igor Rodchenkov</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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