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Exome sequencing identifies a COL14A1 mutation in a large Chinese pedigree with punctate palmoplantar keratoderma

Identifieur interne : 002E76 ( Istex/Corpus ); précédent : 002E75; suivant : 002E77

Exome sequencing identifies a COL14A1 mutation in a large Chinese pedigree with punctate palmoplantar keratoderma

Auteurs : Bi-Rong Guo ; Xin Zhang ; Gang Chen ; Jian-Guo Zhang ; Liang-Dan Sun ; Wei-Dong Du ; Qing Zhang ; Yong Cui ; Jun Zhu ; Xian-Fa Tang ; Ruo Xiao ; Yuan Liu ; Min Li ; Hua-Yang Tang ; Xu Yang ; Hui Cheng ; Ming Li ; Min Gao ; Ping Li ; Jian-Bo Wang ; Feng-Ping Xu ; Xian-Bo Zuo ; Xiao-Dong Zheng ; Xiao-Guang Zhang ; Lin Yang ; Jian-Jun Liu ; Jun Wang ; Sen Yang ; Xue-Jun Zhang

Source :

RBID : ISTEX:63FCE3FBBE32202892DD274167AD2F6CBD1180D7

Abstract

Background Punctate palmoplantar keratoderma (PPPK) is a rare autosomal dominant skin disorder characterised by numerous hyperkeratotic papules irregularly distributed on the palms and soles. To date, no causal gene for this disease has been identified. Methods We performed exome sequencing analysis of four affected individuals and two unaffected controls from one Chinese PPPK family where disease locus was mapped at 8q24.13-8q24.21 by our previous linkage analysis. Results We identified a novel heterozygous mutation in COL14A1 gene (c.4505C→T (p.Pro1502Leu)), which located within the linkage region that we previously identified for PPPK. The mutation was shared by the four affected individuals, but not for the two controls of the family. Sanger sequencing confirmed this mutation in another four cases from this family. This mutation was invisible in the normal controls of this family as well as the additional 676 unrelated normal controls and 781 patients with other disease. The shared COL14A1 mutation, p.Pro1502Leu, is a missense substitution at a highly conserved amino acid residue across multiple species. Conclusions The power of combining exome sequencing and linkage information in the study of genetics of autosomal dominant disorders, even in simplex cases, has been demonstrated. Our results suggested that COL14A1 would be a casual gene for PPPK, which was helpful for advancing us on understanding of the pathogenesis of PPPK.

Url:
DOI: 10.1136/jmedgenet-2012-100868

Links to Exploration step

ISTEX:63FCE3FBBE32202892DD274167AD2F6CBD1180D7

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<name sortKey="Zhang, Xin" sort="Zhang, Xin" uniqKey="Zhang X" first="Xin" last="Zhang">Xin Zhang</name>
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<name sortKey="Zhang, Jian Guo" sort="Zhang, Jian Guo" uniqKey="Zhang J" first="Jian-Guo" last="Zhang">Jian-Guo Zhang</name>
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<name sortKey="Zhang, Qing" sort="Zhang, Qing" uniqKey="Zhang Q" first="Qing" last="Zhang">Qing Zhang</name>
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<name sortKey="Cui, Yong" sort="Cui, Yong" uniqKey="Cui Y" first="Yong" last="Cui">Yong Cui</name>
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<name sortKey="Zhu, Jun" sort="Zhu, Jun" uniqKey="Zhu J" first="Jun" last="Zhu">Jun Zhu</name>
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<name sortKey="Tang, Xian Fa" sort="Tang, Xian Fa" uniqKey="Tang X" first="Xian-Fa" last="Tang">Xian-Fa Tang</name>
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<name sortKey="Xiao, Ruo" sort="Xiao, Ruo" uniqKey="Xiao R" first="Ruo" last="Xiao">Ruo Xiao</name>
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<name sortKey="Liu, Yuan" sort="Liu, Yuan" uniqKey="Liu Y" first="Yuan" last="Liu">Yuan Liu</name>
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<name sortKey="Li, Min" sort="Li, Min" uniqKey="Li M" first="Min" last="Li">Min Li</name>
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<name sortKey="Yang, Xu" sort="Yang, Xu" uniqKey="Yang X" first="Xu" last="Yang">Xu Yang</name>
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<name sortKey="Cheng, Hui" sort="Cheng, Hui" uniqKey="Cheng H" first="Hui" last="Cheng">Hui Cheng</name>
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<name sortKey="Li, Ming" sort="Li, Ming" uniqKey="Li M" first="Ming" last="Li">Ming Li</name>
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<name sortKey="Gao, Min" sort="Gao, Min" uniqKey="Gao M" first="Min" last="Gao">Min Gao</name>
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<name sortKey="Xu, Feng Ping" sort="Xu, Feng Ping" uniqKey="Xu F" first="Feng-Ping" last="Xu">Feng-Ping Xu</name>
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<name sortKey="Zuo, Xian Bo" sort="Zuo, Xian Bo" uniqKey="Zuo X" first="Xian-Bo" last="Zuo">Xian-Bo Zuo</name>
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<name sortKey="Zheng, Xiao Dong" sort="Zheng, Xiao Dong" uniqKey="Zheng X" first="Xiao-Dong" last="Zheng">Xiao-Dong Zheng</name>
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<name sortKey="Zhang, Xiao Guang" sort="Zhang, Xiao Guang" uniqKey="Zhang X" first="Xiao-Guang" last="Zhang">Xiao-Guang Zhang</name>
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<name sortKey="Yang, Lin" sort="Yang, Lin" uniqKey="Yang L" first="Lin" last="Yang">Lin Yang</name>
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<name sortKey="Liu, Jian Jun" sort="Liu, Jian Jun" uniqKey="Liu J" first="Jian-Jun" last="Liu">Jian-Jun Liu</name>
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<name sortKey="Wang, Jun" sort="Wang, Jun" uniqKey="Wang J" first="Jun" last="Wang">Jun Wang</name>
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<name sortKey="Yang, Sen" sort="Yang, Sen" uniqKey="Yang S" first="Sen" last="Yang">Sen Yang</name>
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<name sortKey="Zhang, Xue Jun" sort="Zhang, Xue Jun" uniqKey="Zhang X" first="Xue-Jun" last="Zhang">Xue-Jun Zhang</name>
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<title level="a">Exome sequencing identifies a COL14A1 mutation in a large Chinese pedigree with punctate palmoplantar keratoderma</title>
<author>
<name sortKey="Guo, Bi Rong" sort="Guo, Bi Rong" uniqKey="Guo B" first="Bi-Rong" last="Guo">Bi-Rong Guo</name>
<affiliation>
<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Xin" sort="Zhang, Xin" uniqKey="Zhang X" first="Xin" last="Zhang">Xin Zhang</name>
<affiliation>
<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Chen, Gang" sort="Chen, Gang" uniqKey="Chen G" first="Gang" last="Chen">Gang Chen</name>
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<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Jian Guo" sort="Zhang, Jian Guo" uniqKey="Zhang J" first="Jian-Guo" last="Zhang">Jian-Guo Zhang</name>
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<mods:affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>T-Life Research Center, Fudan University Shanghai, China</mods:affiliation>
</affiliation>
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<name sortKey="Sun, Liang Dan" sort="Sun, Liang Dan" uniqKey="Sun L" first="Liang-Dan" last="Sun">Liang-Dan Sun</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
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<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
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<name sortKey="Du, Wei Dong" sort="Du, Wei Dong" uniqKey="Du W" first="Wei-Dong" last="Du">Wei-Dong Du</name>
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<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
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<author>
<name sortKey="Zhang, Qing" sort="Zhang, Qing" uniqKey="Zhang Q" first="Qing" last="Zhang">Qing Zhang</name>
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<mods:affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Cui, Yong" sort="Cui, Yong" uniqKey="Cui Y" first="Yong" last="Cui">Yong Cui</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Zhu, Jun" sort="Zhu, Jun" uniqKey="Zhu J" first="Jun" last="Zhu">Jun Zhu</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Tang, Xian Fa" sort="Tang, Xian Fa" uniqKey="Tang X" first="Xian-Fa" last="Tang">Xian-Fa Tang</name>
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<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Xiao, Ruo" sort="Xiao, Ruo" uniqKey="Xiao R" first="Ruo" last="Xiao">Ruo Xiao</name>
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<mods:affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Liu, Yuan" sort="Liu, Yuan" uniqKey="Liu Y" first="Yuan" last="Liu">Yuan Liu</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
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<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
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<name sortKey="Li, Min" sort="Li, Min" uniqKey="Li M" first="Min" last="Li">Min Li</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Tang, Hua Yang" sort="Tang, Hua Yang" uniqKey="Tang H" first="Hua-Yang" last="Tang">Hua-Yang Tang</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Yang, Xu" sort="Yang, Xu" uniqKey="Yang X" first="Xu" last="Yang">Xu Yang</name>
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<mods:affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Cheng, Hui" sort="Cheng, Hui" uniqKey="Cheng H" first="Hui" last="Cheng">Hui Cheng</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Li, Ming" sort="Li, Ming" uniqKey="Li M" first="Ming" last="Li">Ming Li</name>
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<mods:affiliation>Department of Dermatology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Gao, Min" sort="Gao, Min" uniqKey="Gao M" first="Min" last="Gao">Min Gao</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Li, Ping" sort="Li, Ping" uniqKey="Li P" first="Ping" last="Li">Ping Li</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
</affiliation>
<affiliation>
<mods:affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</mods:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Wang, Jian Bo" sort="Wang, Jian Bo" uniqKey="Wang J" first="Jian-Bo" last="Wang">Jian-Bo Wang</name>
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<mods:affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</mods:affiliation>
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<div type="abstract">Background Punctate palmoplantar keratoderma (PPPK) is a rare autosomal dominant skin disorder characterised by numerous hyperkeratotic papules irregularly distributed on the palms and soles. To date, no causal gene for this disease has been identified. Methods We performed exome sequencing analysis of four affected individuals and two unaffected controls from one Chinese PPPK family where disease locus was mapped at 8q24.13-8q24.21 by our previous linkage analysis. Results We identified a novel heterozygous mutation in COL14A1 gene (c.4505C→T (p.Pro1502Leu)), which located within the linkage region that we previously identified for PPPK. The mutation was shared by the four affected individuals, but not for the two controls of the family. Sanger sequencing confirmed this mutation in another four cases from this family. This mutation was invisible in the normal controls of this family as well as the additional 676 unrelated normal controls and 781 patients with other disease. The shared COL14A1 mutation, p.Pro1502Leu, is a missense substitution at a highly conserved amino acid residue across multiple species. Conclusions The power of combining exome sequencing and linkage information in the study of genetics of autosomal dominant disorders, even in simplex cases, has been demonstrated. Our results suggested that COL14A1 would be a casual gene for PPPK, which was helpful for advancing us on understanding of the pathogenesis of PPPK.</div>
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<abstract>Background Punctate palmoplantar keratoderma (PPPK) is a rare autosomal dominant skin disorder characterised by numerous hyperkeratotic papules irregularly distributed on the palms and soles. To date, no causal gene for this disease has been identified. Methods We performed exome sequencing analysis of four affected individuals and two unaffected controls from one Chinese PPPK family where disease locus was mapped at 8q24.13-8q24.21 by our previous linkage analysis. Results We identified a novel heterozygous mutation in COL14A1 gene (c.4505C→T (p.Pro1502Leu)), which located within the linkage region that we previously identified for PPPK. The mutation was shared by the four affected individuals, but not for the two controls of the family. Sanger sequencing confirmed this mutation in another four cases from this family. This mutation was invisible in the normal controls of this family as well as the additional 676 unrelated normal controls and 781 patients with other disease. The shared COL14A1 mutation, p.Pro1502Leu, is a missense substitution at a highly conserved amino acid residue across multiple species. Conclusions The power of combining exome sequencing and linkage information in the study of genetics of autosomal dominant disorders, even in simplex cases, has been demonstrated. Our results suggested that COL14A1 would be a casual gene for PPPK, which was helpful for advancing us on understanding of the pathogenesis of PPPK.</abstract>
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<author xml:id="author-3">
<persName>
<forename type="first">Gang</forename>
<surname>Chen</surname>
</persName>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-4">
<persName>
<forename type="first">Jian-Guo</forename>
<surname>Zhang</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
<affiliation>T-Life Research Center, Fudan University Shanghai, China</affiliation>
</author>
<author xml:id="author-5">
<persName>
<forename type="first">Liang-Dan</forename>
<surname>Sun</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-6">
<persName>
<forename type="first">Wei-dong</forename>
<surname>Du</surname>
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<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-7">
<persName>
<forename type="first">Qing</forename>
<surname>Zhang</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
</author>
<author xml:id="author-8">
<persName>
<forename type="first">Yong</forename>
<surname>Cui</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-9">
<persName>
<forename type="first">Jun</forename>
<surname>Zhu</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-10">
<persName>
<forename type="first">Xian-Fa</forename>
<surname>Tang</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-11">
<persName>
<forename type="first">Ruo</forename>
<surname>Xiao</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
</author>
<author xml:id="author-12">
<persName>
<forename type="first">Yuan</forename>
<surname>Liu</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-13">
<persName>
<forename type="first">Min</forename>
<surname>Li</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-14">
<persName>
<forename type="first">Hua-Yang</forename>
<surname>Tang</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-15">
<persName>
<forename type="first">Xu</forename>
<surname>Yang</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
</author>
<author xml:id="author-16">
<persName>
<forename type="first">Hui</forename>
<surname>Cheng</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-17">
<persName>
<forename type="first">Ming</forename>
<surname>Li</surname>
</persName>
<affiliation>Department of Dermatology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China</affiliation>
</author>
<author xml:id="author-18">
<persName>
<forename type="first">Min</forename>
<surname>Gao</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-19">
<persName>
<forename type="first">Ping</forename>
<surname>Li</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-20">
<persName>
<forename type="first">Jian-Bo</forename>
<surname>Wang</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-21">
<persName>
<forename type="first">Feng-Ping</forename>
<surname>Xu</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
</author>
<author xml:id="author-22">
<persName>
<forename type="first">Xian-Bo</forename>
<surname>Zuo</surname>
</persName>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-23">
<persName>
<forename type="first">Xiao-Dong</forename>
<surname>Zheng</surname>
</persName>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-24">
<persName>
<forename type="first">Xiao-Guang</forename>
<surname>Zhang</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-25">
<persName>
<forename type="first">Lin</forename>
<surname>Yang</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
</author>
<author xml:id="author-26">
<persName>
<forename type="first">Jian-Jun</forename>
<surname>Liu</surname>
</persName>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-27">
<persName>
<forename type="first">Jun</forename>
<surname>Wang</surname>
</persName>
<affiliation>Beijing Genomics Institute-Shenzhen, Shenzhen, China</affiliation>
<affiliation>Department of Biology, University of Copenhagen, Copenhagen, Denmark</affiliation>
</author>
<author xml:id="author-28">
<persName>
<forename type="first">Sen</forename>
<surname>Yang</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
<author xml:id="author-29">
<persName>
<forename type="first">Xue-Jun</forename>
<surname>Zhang</surname>
</persName>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
</author>
</analytic>
<monogr>
<title level="j">Journal of Medical Genetics</title>
<title level="j" type="abbrev">J Med Genet</title>
<idno type="pISSN">0022-2593</idno>
<idno type="eISSN">1468-6244</idno>
<imprint>
<publisher>BMJ Publishing Group Ltd</publisher>
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<p>Background Punctate palmoplantar keratoderma (PPPK) is a rare autosomal dominant skin disorder characterised by numerous hyperkeratotic papules irregularly distributed on the palms and soles. To date, no causal gene for this disease has been identified. Methods We performed exome sequencing analysis of four affected individuals and two unaffected controls from one Chinese PPPK family where disease locus was mapped at 8q24.13-8q24.21 by our previous linkage analysis. Results We identified a novel heterozygous mutation in COL14A1 gene (c.4505C→T (p.Pro1502Leu)), which located within the linkage region that we previously identified for PPPK. The mutation was shared by the four affected individuals, but not for the two controls of the family. Sanger sequencing confirmed this mutation in another four cases from this family. This mutation was invisible in the normal controls of this family as well as the additional 676 unrelated normal controls and 781 patients with other disease. The shared COL14A1 mutation, p.Pro1502Leu, is a missense substitution at a highly conserved amino acid residue across multiple species. Conclusions The power of combining exome sequencing and linkage information in the study of genetics of autosomal dominant disorders, even in simplex cases, has been demonstrated. Our results suggested that COL14A1 would be a casual gene for PPPK, which was helpful for advancing us on understanding of the pathogenesis of PPPK.</p>
</abstract>
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<keywords scheme="keyword">
<list>
<head>keywords</head>
<item>
<term>Punctate Palmoplantar Keratoderma</term>
</item>
<item>
<term>Exome Sequencing</term>
</item>
<item>
<term>Mutation</term>
</item>
<item>
<term>COL14A1</term>
</item>
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<journal-id journal-id-type="nlm-ta">J Med Genet</journal-id>
<journal-id journal-id-type="publisher-id">jmg</journal-id>
<journal-title>Journal of Medical Genetics</journal-title>
<abbrev-journal-title abbrev-type="publisher">J Med Genet</abbrev-journal-title>
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<issn pub-type="ppub">0022-2593</issn>
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<publisher-name>BMJ Publishing Group Ltd</publisher-name>
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<article-categories>
<subj-group subj-group-type="heading">
<subject>New disease loci</subject>
</subj-group>
<series-title>Original article</series-title>
</article-categories>
<title-group>
<article-title>Exome sequencing identifies a
<italic>COL14A1</italic>
mutation in a large Chinese pedigree with punctate palmoplantar keratoderma</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Guo</surname>
<given-names>Bi-Rong</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Xin</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Gang</given-names>
</name>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Jian-Guo</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
<xref ref-type="aff" rid="af4">4</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sun</surname>
<given-names>Liang-Dan</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Du</surname>
<given-names>Wei-dong</given-names>
</name>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Qing</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cui</surname>
<given-names>Yong</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhu</surname>
<given-names>Jun</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tang</surname>
<given-names>Xian-Fa</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Xiao</surname>
<given-names>Ruo</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Yuan</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Min</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Tang</surname>
<given-names>Hua-Yang</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Xu</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Cheng</surname>
<given-names>Hui</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Ming</given-names>
</name>
<xref ref-type="aff" rid="af5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gao</surname>
<given-names>Min</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Ping</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Jian-Bo</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Xu</surname>
<given-names>Feng-Ping</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zuo</surname>
<given-names>Xian-Bo</given-names>
</name>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zheng</surname>
<given-names>Xiao-Dong</given-names>
</name>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Xiao-Guang</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Lin</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Jian-Jun</given-names>
</name>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Jun</given-names>
</name>
<xref ref-type="aff" rid="af3">3</xref>
<xref ref-type="aff" rid="af6">6</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yang</surname>
<given-names>Sen</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Xue-Jun</given-names>
</name>
<xref ref-type="aff" rid="af1">1</xref>
<xref ref-type="aff" rid="af2">2</xref>
</contrib>
</contrib-group>
<aff id="af1">
<label>1</label>
Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</aff>
<aff id="af2">
<label>2</label>
State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</aff>
<aff id="af3">
<label>3</label>
Beijing Genomics Institute-Shenzhen, Shenzhen, China</aff>
<aff id="af4">
<label>4</label>
T-Life Research Center, Fudan University Shanghai, China</aff>
<aff id="af5">
<label>5</label>
Department of Dermatology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China</aff>
<aff id="af6">
<label>6</label>
Department of Biology, University of Copenhagen, Copenhagen, Denmark</aff>
<author-notes>
<corresp>
<label>Correspondence to</label>
Professor Jun Wang,
<email>wangj@genomics.org.cn</email>
; Professor Sen Yang,
<email>yangsen@medmail.com.cn</email>
</corresp>
<fn>
<p>BRG, XZ, GC and JGZ contributed equally</p>
</fn>
</author-notes>
<pub-date pub-type="ppub">
<month>9</month>
<year>2012</year>
</pub-date>
<volume>49</volume>
<volume-id pub-id-type="other">49</volume-id>
<volume-id pub-id-type="other">49</volume-id>
<issue>9</issue>
<issue-id pub-id-type="other">jmedgenet;49/9</issue-id>
<issue-id pub-id-type="other">9</issue-id>
<issue-id pub-id-type="other">49/9</issue-id>
<fpage>563</fpage>
<history>
<date date-type="received">
<day>5</day>
<month>3</month>
<year>2012</year>
</date>
<date date-type="accepted">
<day>25</day>
<month>7</month>
<year>2012</year>
</date>
</history>
<permissions>
<copyright-statement>2012, Published by the BMJ Publishing Group Limited. For permission to use (where not already granted under a licence) please go to http://group.bmj.com/group/rights-licensing/permissions.</copyright-statement>
<copyright-year>2012</copyright-year>
</permissions>
<self-uri content-type="pdf" xlink:role="full-text" xlink:href="jmedgenet-49-563.pdf"></self-uri>
<abstract>
<sec>
<title>Background</title>
<p>Punctate palmoplantar keratoderma (PPPK) is a rare autosomal dominant skin disorder characterised by numerous hyperkeratotic papules irregularly distributed on the palms and soles. To date, no causal gene for this disease has been identified.</p>
</sec>
<sec>
<title>Methods</title>
<p>We performed exome sequencing analysis of four affected individuals and two unaffected controls from one Chinese PPPK family where disease locus was mapped at 8q24.13-8q24.21 by our previous linkage analysis.</p>
</sec>
<sec>
<title>Results</title>
<p>We identified a novel heterozygous mutation in
<italic>COL14A1</italic>
gene (c.4505C→T (p.Pro1502Leu)), which located within the linkage region that we previously identified for PPPK. The mutation was shared by the four affected individuals, but not for the two controls of the family. Sanger sequencing confirmed this mutation in another four cases from this family. This mutation was invisible in the normal controls of this family as well as the additional 676 unrelated normal controls and 781 patients with other disease. The shared
<italic>COL14A1</italic>
mutation, p.Pro1502Leu, is a missense substitution at a highly conserved amino acid residue across multiple species.</p>
</sec>
<sec>
<title>Conclusions</title>
<p>The power of combining exome sequencing and linkage information in the study of genetics of autosomal dominant disorders, even in simplex cases, has been demonstrated. Our results suggested that
<italic>COL14A1</italic>
would be a casual gene for PPPK, which was helpful for advancing us on understanding of the pathogenesis of PPPK.</p>
</sec>
</abstract>
<kwd-group>
<kwd>Punctate Palmoplantar Keratoderma</kwd>
<kwd>Exome Sequencing</kwd>
<kwd>Mutation</kwd>
<kwd>COL14A1</kwd>
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<title>Exome sequencing identifies a COL14A1 mutation in a large Chinese pedigree with punctate palmoplantar keratoderma</title>
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<title>Exome sequencing identifies a COL14A1 mutation in a large Chinese pedigree with punctate palmoplantar keratoderma</title>
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<name type="personal">
<namePart type="given">Bi-Rong</namePart>
<namePart type="family">Guo</namePart>
<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
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<name type="personal">
<namePart type="given">Xin</namePart>
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<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
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<namePart type="given">Jian-Guo</namePart>
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<affiliation>T-Life Research Center, Fudan University Shanghai, China</affiliation>
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<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
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<namePart type="given">Yong</namePart>
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<affiliation>Institute of Dermatology and Department of Dermatology, No. 1 Hospital, Anhui Medical University, Hefei, Anhui, China</affiliation>
<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
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<namePart type="given">Jun</namePart>
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<namePart type="given">Yuan</namePart>
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<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
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<namePart type="given">Hui</namePart>
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<affiliation>State Key Laboratory Incubation Base of Dermatology, Ministry of National Science and Technology, Hefei, Anhui, China</affiliation>
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<name type="personal">
<namePart type="given">Ming</namePart>
<namePart type="family">Li</namePart>
<affiliation>Department of Dermatology, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, China</affiliation>
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<namePart type="given">Feng-Ping</namePart>
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<affiliation>Department of Biology, University of Copenhagen, Copenhagen, Denmark</affiliation>
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<namePart type="given">Sen</namePart>
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<abstract>Background Punctate palmoplantar keratoderma (PPPK) is a rare autosomal dominant skin disorder characterised by numerous hyperkeratotic papules irregularly distributed on the palms and soles. To date, no causal gene for this disease has been identified. Methods We performed exome sequencing analysis of four affected individuals and two unaffected controls from one Chinese PPPK family where disease locus was mapped at 8q24.13-8q24.21 by our previous linkage analysis. Results We identified a novel heterozygous mutation in COL14A1 gene (c.4505C→T (p.Pro1502Leu)), which located within the linkage region that we previously identified for PPPK. The mutation was shared by the four affected individuals, but not for the two controls of the family. Sanger sequencing confirmed this mutation in another four cases from this family. This mutation was invisible in the normal controls of this family as well as the additional 676 unrelated normal controls and 781 patients with other disease. The shared COL14A1 mutation, p.Pro1502Leu, is a missense substitution at a highly conserved amino acid residue across multiple species. Conclusions The power of combining exome sequencing and linkage information in the study of genetics of autosomal dominant disorders, even in simplex cases, has been demonstrated. Our results suggested that COL14A1 would be a casual gene for PPPK, which was helpful for advancing us on understanding of the pathogenesis of PPPK.</abstract>
<note type="footnotes">BRG, XZ, GC and JGZ contributed equally</note>
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<genre>keywords</genre>
<topic>Punctate Palmoplantar Keratoderma</topic>
<topic>Exome Sequencing</topic>
<topic>Mutation</topic>
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