Prevalence of avian influenza viruses, Borrelia garinii, Mycobacterium avium, and Mycobacterium avium subsp. paratuberculosis in waterfowl and terrestrial birds in Slovakia, 2006.
Identifieur interne : 000247 ( PubMed/Curation ); précédent : 000246; suivant : 000248Prevalence of avian influenza viruses, Borrelia garinii, Mycobacterium avium, and Mycobacterium avium subsp. paratuberculosis in waterfowl and terrestrial birds in Slovakia, 2006.
Auteurs : Paulina Gronesova ; Martina Ficova ; Adriana Mizakova ; Peter Kabat ; Alfred Trnka ; Tatiana BetakovaSource :
- Avian pathology : journal of the W.V.P.A [ 1465-3338 ] ; 2008.
Descripteurs français
- KwdFr :
- Animaux, Groupe Borrelia burgdorferi (isolement et purification), Maladies des oiseaux (microbiologie), Maladies des oiseaux (épidémiologie), Mycobacterium avium (isolement et purification), Mycobacterium avium subsp. paratuberculosis (isolement et purification), Oiseaux (virologie), Slovaquie, Virus de la grippe A (), Virus de la grippe A (isolement et purification).
- MESH :
- isolement et purification : Groupe Borrelia burgdorferi, Mycobacterium avium, Mycobacterium avium subsp. paratuberculosis, Virus de la grippe A.
- microbiologie : Maladies des oiseaux.
- virologie : Oiseaux.
- épidémiologie : Maladies des oiseaux.
- Animaux, Slovaquie, Virus de la grippe A.
- Wicri :
- geographic : Slovaquie.
English descriptors
- KwdEn :
- Animals, Bird Diseases (epidemiology), Bird Diseases (microbiology), Birds (virology), Borrelia burgdorferi Group (isolation & purification), Influenza A virus (classification), Influenza A virus (isolation & purification), Mycobacterium avium (isolation & purification), Mycobacterium avium subsp. paratuberculosis (isolation & purification), Slovakia.
- MESH :
- geographic : Slovakia.
- classification : Influenza A virus.
- epidemiology : Bird Diseases.
- isolation & purification : Borrelia burgdorferi Group, Influenza A virus, Mycobacterium avium, Mycobacterium avium subsp. paratuberculosis.
- microbiology : Bird Diseases.
- virology : Birds.
- Animals.
Abstract
The prevalence of Borrelia, Mycobacteria and avian influenza virus (AIV) infections, together with the distribution of different AIV subtypes, was studied in migratory waterfowl and terrestrial birds trapped in three localities in Slovakia during 2006. Samples obtained from waterfowl captured in the Senianske Ponds area of Eastern Slovakia showed the highest diversity of AIV isolates. A total of 13 different subtypes were detected in 19 samples from this location (H1N2, H2N2, H3N2, H6N6, H7N6, H9N2, H9N5, H9N6, H10N5, H10N6, H12N6, H13N6, and H16N6). H3N5 virus was detected in 50% of passerines testing positive for AIV in the Parizske Wetlands, with H7N2, H9N2, H9N5, H12N1, and H13N2 infections also recorded at this locality. H9N5 virus predominated in passerines captured at Trnava Ponds, with isolates H1N6, H6N5, H7N2, H7N6, H10N3, and H10N6 also detected at this location. There were five cases where different AIV infections were detected in oropharyngeal and cloacal samples originating from the same bird (H13N6 and H1N2; H10N5 and H12N6; H9N5 and H6N5; H10N6 and H7N6; and H9N2 and H3N5 in the oropharynx and cloaca, respectively). Between 21% and 52% of captured birds tested positive for Borrelia burgdorferi sensu lato, with the proportion infected depending on bird species and locality. Samples were characterized by polymerase chain reaction-restriction fragment length polymorphism analysis and identified as Borrelia garinii species (either B/B' or R/R' pattern). Mycobacteria were detected in 42% and 26% of waders captured at Senianske Ponds and marsh-dwelling passerines captured in the Parizske Wetlands, respectively. Interestingly, forest-dwelling passerine species caught in the Trnava Ponds region were tested negative for Mycobacteria.
DOI: 10.1080/03079450802356953
PubMed: 18798030
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Paulina Gronesova<affiliation><nlm:affiliation>Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovak Republic.</nlm:affiliation><wicri:noCountry code="subField">Slovak Republic</wicri:noCountry></affiliation>Le document en format XML
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last="Kabat">Peter Kabat</name></author><author><name sortKey="Trnka, Alfred" sort="Trnka, Alfred" uniqKey="Trnka A" first="Alfred" last="Trnka">Alfred Trnka</name></author><author><name sortKey="Betakova, Tatiana" sort="Betakova, Tatiana" uniqKey="Betakova T" first="Tatiana" last="Betakova">Tatiana Betakova</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:18798030</idno><idno type="pmid">18798030</idno><idno type="doi">10.1080/03079450802356953</idno><idno type="wicri:Area/PubMed/Corpus">000247</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000247</idno><idno type="wicri:Area/PubMed/Curation">000247</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000247</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Prevalence of avian influenza viruses, Borrelia garinii, Mycobacterium avium, and Mycobacterium avium subsp. paratuberculosis in waterfowl and terrestrial birds in Slovakia, 2006.</title><author><name sortKey="Gronesova, Paulina" sort="Gronesova, Paulina" uniqKey="Gronesova P" first="Paulina" last="Gronesova">Paulina Gronesova</name><affiliation><nlm:affiliation>Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovak Republic.</nlm:affiliation><wicri:noCountry code="subField">Slovak Republic</wicri:noCountry></affiliation></author><author><name sortKey="Ficova, Martina" sort="Ficova, Martina" uniqKey="Ficova M" first="Martina" last="Ficova">Martina Ficova</name></author><author><name sortKey="Mizakova, Adriana" sort="Mizakova, Adriana" uniqKey="Mizakova A" first="Adriana" last="Mizakova">Adriana Mizakova</name></author><author><name sortKey="Kabat, Peter" sort="Kabat, Peter" uniqKey="Kabat P" first="Peter" last="Kabat">Peter Kabat</name></author><author><name sortKey="Trnka, Alfred" sort="Trnka, Alfred" uniqKey="Trnka A" first="Alfred" last="Trnka">Alfred Trnka</name></author><author><name sortKey="Betakova, Tatiana" sort="Betakova, Tatiana" uniqKey="Betakova T" first="Tatiana" last="Betakova">Tatiana Betakova</name></author></analytic><series><title level="j">Avian pathology : journal of the W.V.P.A</title><idno type="eISSN">1465-3338</idno><imprint><date when="2008" type="published">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Bird Diseases (epidemiology)</term><term>Bird Diseases (microbiology)</term><term>Birds (virology)</term><term>Borrelia burgdorferi Group (isolation & purification)</term><term>Influenza A virus (classification)</term><term>Influenza A virus (isolation & purification)</term><term>Mycobacterium avium (isolation & purification)</term><term>Mycobacterium avium subsp. paratuberculosis (isolation & purification)</term><term>Slovakia</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Groupe Borrelia burgdorferi (isolement et purification)</term><term>Maladies des oiseaux (microbiologie)</term><term>Maladies des oiseaux (épidémiologie)</term><term>Mycobacterium avium (isolement et purification)</term><term>Mycobacterium avium subsp. paratuberculosis (isolement et purification)</term><term>Oiseaux (virologie)</term><term>Slovaquie</term><term>Virus de la grippe A ()</term><term>Virus de la grippe A (isolement et purification)</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Slovakia</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Bird Diseases</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Borrelia burgdorferi Group</term><term>Influenza A virus</term><term>Mycobacterium avium</term><term>Mycobacterium avium subsp. paratuberculosis</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Groupe Borrelia burgdorferi</term><term>Mycobacterium avium</term><term>Mycobacterium avium subsp. paratuberculosis</term><term>Virus de la grippe A</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des oiseaux</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Bird Diseases</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Birds</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Maladies des oiseaux</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Slovaquie</term><term>Virus de la grippe A</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Slovaquie</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The prevalence of Borrelia, Mycobacteria and avian influenza virus (AIV) infections, together with the distribution of different AIV subtypes, was studied in migratory waterfowl and terrestrial birds trapped in three localities in Slovakia during 2006. Samples obtained from waterfowl captured in the Senianske Ponds area of Eastern Slovakia showed the highest diversity of AIV isolates. A total of 13 different subtypes were detected in 19 samples from this location (H1N2, H2N2, H3N2, H6N6, H7N6, H9N2, H9N5, H9N6, H10N5, H10N6, H12N6, H13N6, and H16N6). H3N5 virus was detected in 50% of passerines testing positive for AIV in the Parizske Wetlands, with H7N2, H9N2, H9N5, H12N1, and H13N2 infections also recorded at this locality. H9N5 virus predominated in passerines captured at Trnava Ponds, with isolates H1N6, H6N5, H7N2, H7N6, H10N3, and H10N6 also detected at this location. There were five cases where different AIV infections were detected in oropharyngeal and cloacal samples originating from the same bird (H13N6 and H1N2; H10N5 and H12N6; H9N5 and H6N5; H10N6 and H7N6; and H9N2 and H3N5 in the oropharynx and cloaca, respectively). Between 21% and 52% of captured birds tested positive for Borrelia burgdorferi sensu lato, with the proportion infected depending on bird species and locality. Samples were characterized by polymerase chain reaction-restriction fragment length polymorphism analysis and identified as Borrelia garinii species (either B/B' or R/R' pattern). Mycobacteria were detected in 42% and 26% of waders captured at Senianske Ponds and marsh-dwelling passerines captured in the Parizske Wetlands, respectively. Interestingly, forest-dwelling passerine species caught in the Trnava Ponds region were tested negative for Mycobacteria.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18798030</PMID><DateCompleted><Year>2008</Year><Month>11</Month><Day>28</Day></DateCompleted><DateRevised><Year>2008</Year><Month>09</Month><Day>17</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1465-3338</ISSN><JournalIssue CitedMedium="Internet"><Volume>37</Volume><Issue>5</Issue><PubDate><Year>2008</Year><Month>Oct</Month></PubDate></JournalIssue><Title>Avian pathology : journal of the W.V.P.A</Title><ISOAbbreviation>Avian Pathol.</ISOAbbreviation></Journal><ArticleTitle>Prevalence of avian influenza viruses, Borrelia garinii, Mycobacterium avium, and Mycobacterium avium subsp. paratuberculosis in waterfowl and terrestrial birds in Slovakia, 2006.</ArticleTitle><Pagination><MedlinePgn>537-43</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1080/03079450802356953</ELocationID><Abstract><AbstractText>The prevalence of Borrelia, Mycobacteria and avian influenza virus (AIV) infections, together with the distribution of different AIV subtypes, was studied in migratory waterfowl and terrestrial birds trapped in three localities in Slovakia during 2006. Samples obtained from waterfowl captured in the Senianske Ponds area of Eastern Slovakia showed the highest diversity of AIV isolates. A total of 13 different subtypes were detected in 19 samples from this location (H1N2, H2N2, H3N2, H6N6, H7N6, H9N2, H9N5, H9N6, H10N5, H10N6, H12N6, H13N6, and H16N6). H3N5 virus was detected in 50% of passerines testing positive for AIV in the Parizske Wetlands, with H7N2, H9N2, H9N5, H12N1, and H13N2 infections also recorded at this locality. H9N5 virus predominated in passerines captured at Trnava Ponds, with isolates H1N6, H6N5, H7N2, H7N6, H10N3, and H10N6 also detected at this location. There were five cases where different AIV infections were detected in oropharyngeal and cloacal samples originating from the same bird (H13N6 and H1N2; H10N5 and H12N6; H9N5 and H6N5; H10N6 and H7N6; and H9N2 and H3N5 in the oropharynx and cloaca, respectively). Between 21% and 52% of captured birds tested positive for Borrelia burgdorferi sensu lato, with the proportion infected depending on bird species and locality. Samples were characterized by polymerase chain reaction-restriction fragment length polymorphism analysis and identified as Borrelia garinii species (either B/B' or R/R' pattern). Mycobacteria were detected in 42% and 26% of waders captured at Senianske Ponds and marsh-dwelling passerines captured in the Parizske Wetlands, respectively. Interestingly, forest-dwelling passerine species caught in the Trnava Ponds region were tested negative for Mycobacteria.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Gronesova</LastName><ForeName>Paulina</ForeName><Initials>P</Initials><AffiliationInfo><Affiliation>Institute of Virology, Slovak Academy of Sciences, Bratislava, Slovak Republic.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ficova</LastName><ForeName>Martina</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Mizakova</LastName><ForeName>Adriana</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Kabat</LastName><ForeName>Peter</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Trnka</LastName><ForeName>Alfred</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Betakova</LastName><ForeName>Tatiana</ForeName><Initials>T</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Avian Pathol</MedlineTA><NlmUniqueID>8210638</NlmUniqueID><ISSNLinking>0307-9457</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001715" MajorTopicYN="N">Bird Diseases</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015748" MajorTopicYN="N">Borrelia burgdorferi Group</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009162" MajorTopicYN="N">Mycobacterium avium</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016927" MajorTopicYN="N">Mycobacterium avium subsp. paratuberculosis</DescriptorName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018154" MajorTopicYN="N" Type="Geographic">Slovakia</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>9</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2008</Year><Month>12</Month><Day>17</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>9</Month><Day>18</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">18798030</ArticleId><ArticleId IdType="pii">902478726</ArticleId><ArticleId IdType="doi">10.1080/03079450802356953</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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