Genetic Analysis of Avian Influenza Viruses: Cocirculation of Avian Influenza Viruses with Allele A and B Nonstructural Gene in Northern Pintail (Anas acuta) Ducks Wintering in Japan.
Identifieur interne : 000129 ( PubMed/Curation ); précédent : 000128; suivant : 000130Genetic Analysis of Avian Influenza Viruses: Cocirculation of Avian Influenza Viruses with Allele A and B Nonstructural Gene in Northern Pintail (Anas acuta) Ducks Wintering in Japan.
Auteurs : Alam Jahangir [Bangladesh] ; Sakchai Ruenphet ; Nadia Sultana ; Dany Shoham ; Kazuaki TakeharaSource :
- Influenza research and treatment [ 2090-1399 ] ; 2012.
Abstract
The pandemic influenza virus strains of 1918 (H1N1), 1957 (H2N2), 1968 (H3N2), and 2009 (H1N1) have genes related to avian influenza viruses (AIVs). The nonstructural (NS) gene of AIVs plays a significant role in host-viral interaction. However, little is known about the degree of diversity of this gene in Northern pintail (Anas acuta) ducks wintering in Japan. This study describes characteristics of pintail-originated H1N1, H1N2, H1N3, H5N2, H5N3, H5N9, and H7N7 viruses. Most of the viruses were revealed to be avian strains and not related to pandemic and seasonal flu strains. Nevertheless, the NP genes of 62.5% (5/8) viruses were found closely related to a A/swine/Korea/C12/08, indicating exchange of genetic material and ongoing mammalian-linked evolution of AIVs. Besides, all the viruses, except Aomori/422/07 H1N1, contain PSIQSR∗GLF motif usually found in avian, porcine, and human H1 strains. The Aomori/422/07 H1N1 has a PSVQSR∗GLF motif identical to a North American strain. This findings linked to an important intercontinental, Asian-American biogeographical interface. Phylogenetically all the viruses were clustered in Eurasian lineage. Cocirculation of allele A and B (NS gene) viruses was evident in the study implying the existence of a wide reservoir of influenza A viruses in pintail wintering in Japan.
DOI: 10.1155/2012/847505
PubMed: 23320157
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The nonstructural (NS) gene of AIVs plays a significant role in host-viral interaction. However, little is known about the degree of diversity of this gene in Northern pintail (Anas acuta) ducks wintering in Japan. This study describes characteristics of pintail-originated H1N1, H1N2, H1N3, H5N2, H5N3, H5N9, and H7N7 viruses. Most of the viruses were revealed to be avian strains and not related to pandemic and seasonal flu strains. Nevertheless, the NP genes of 62.5% (5/8) viruses were found closely related to a A/swine/Korea/C12/08, indicating exchange of genetic material and ongoing mammalian-linked evolution of AIVs. Besides, all the viruses, except Aomori/422/07 H1N1, contain PSIQSR∗GLF motif usually found in avian, porcine, and human H1 strains. The Aomori/422/07 H1N1 has a PSVQSR∗GLF motif identical to a North American strain. This findings linked to an important intercontinental, Asian-American biogeographical interface. Phylogenetically all the viruses were clustered in Eurasian lineage. Cocirculation of allele A and B (NS gene) viruses was evident in the study implying the existence of a wide reservoir of influenza A viruses in pintail wintering in Japan.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">23320157</PMID><DateCompleted><Year>2013</Year><Month>01</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">2090-1399</ISSN><JournalIssue CitedMedium="Internet"><Volume>2012</Volume><PubDate><Year>2012</Year></PubDate></JournalIssue><Title>Influenza research and treatment</Title><ISOAbbreviation>Influenza Res Treat</ISOAbbreviation></Journal><ArticleTitle>Genetic Analysis of Avian Influenza Viruses: Cocirculation of Avian Influenza Viruses with Allele A and B Nonstructural Gene in Northern Pintail (Anas acuta) Ducks Wintering in Japan.</ArticleTitle><Pagination><MedlinePgn>847505</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1155/2012/847505</ELocationID><Abstract><AbstractText>The pandemic influenza virus strains of 1918 (H1N1), 1957 (H2N2), 1968 (H3N2), and 2009 (H1N1) have genes related to avian influenza viruses (AIVs). The nonstructural (NS) gene of AIVs plays a significant role in host-viral interaction. However, little is known about the degree of diversity of this gene in Northern pintail (Anas acuta) ducks wintering in Japan. This study describes characteristics of pintail-originated H1N1, H1N2, H1N3, H5N2, H5N3, H5N9, and H7N7 viruses. Most of the viruses were revealed to be avian strains and not related to pandemic and seasonal flu strains. Nevertheless, the NP genes of 62.5% (5/8) viruses were found closely related to a A/swine/Korea/C12/08, indicating exchange of genetic material and ongoing mammalian-linked evolution of AIVs. Besides, all the viruses, except Aomori/422/07 H1N1, contain PSIQSR∗GLF motif usually found in avian, porcine, and human H1 strains. The Aomori/422/07 H1N1 has a PSVQSR∗GLF motif identical to a North American strain. This findings linked to an important intercontinental, Asian-American biogeographical interface. Phylogenetically all the viruses were clustered in Eurasian lineage. Cocirculation of allele A and B (NS gene) viruses was evident in the study implying the existence of a wide reservoir of influenza A viruses in pintail wintering in Japan.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jahangir</LastName><ForeName>Alam</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Laboratory of Zoonoses, School of Veterinary Medicine, Kitasato University, Towada 034-8628, Japan ; Animal Health Research Division, Bangladesh Livestock Research Institute, Savar, Dhaka 1341, Bangladesh.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ruenphet</LastName><ForeName>Sakchai</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Sultana</LastName><ForeName>Nadia</ForeName><Initials>N</Initials></Author><Author ValidYN="Y"><LastName>Shoham</LastName><ForeName>Dany</ForeName><Initials>D</Initials></Author><Author 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Nov;145(2):329-33</Citation><ArticleIdList><ArticleId IdType="pubmed">19635509</ArticleId></ArticleIdList></Reference><Reference><Citation>N Engl J Med. 2005 Dec 22;353(25):2667-72</Citation><ArticleIdList><ArticleId IdType="pubmed">16371632</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2009;4(3):e5022</Citation><ArticleIdList><ArticleId IdType="pubmed">19325912</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2005 Dec;114(1-2):89-100</Citation><ArticleIdList><ArticleId IdType="pubmed">16039745</ArticleId></ArticleIdList></Reference><Reference><Citation>Prog Med Virol. 1993;40:178-92</Citation><ArticleIdList><ArticleId IdType="pubmed">8438074</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 1996 Nov;70(11):8041-6</Citation><ArticleIdList><ArticleId IdType="pubmed">8892928</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 1989 Nov;63(11):4603-8</Citation><ArticleIdList><ArticleId IdType="pubmed">2795713</ArticleId></ArticleIdList></Reference><Reference><Citation>Virol J. 2008 Dec 12;5:147</Citation><ArticleIdList><ArticleId IdType="pubmed">19077274</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2006 Dec;23(12):2336-41</Citation><ArticleIdList><ArticleId IdType="pubmed">16945980</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Genes. 2008 Feb;36(1):117-25</Citation><ArticleIdList><ArticleId IdType="pubmed">18172752</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2008 Mar;52(1):49-53</Citation><ArticleIdList><ArticleId IdType="pubmed">18459295</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2009 Jul;143(1):44-52</Citation><ArticleIdList><ArticleId IdType="pubmed">19463720</ArticleId></ArticleIdList></Reference><Reference><Citation>Influenza Res Treat. 2011;2011:861792</Citation><ArticleIdList><ArticleId IdType="pubmed">23074663</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 1991 Aug;183(2):566-77</Citation><ArticleIdList><ArticleId IdType="pubmed">1830182</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2004 Sep;42(9):4349-54</Citation><ArticleIdList><ArticleId IdType="pubmed">15365042</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2006 Aug;151(8):1615-24</Citation><ArticleIdList><ArticleId IdType="pubmed">16532371</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2007 Jul;81(14):7529-39</Citation><ArticleIdList><ArticleId IdType="pubmed">17507485</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet. 1998 Feb 14;351(9101):472-7</Citation><ArticleIdList><ArticleId IdType="pubmed">9482438</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Mar 17;311(5767):1576-80</Citation><ArticleIdList><ArticleId IdType="pubmed">16439620</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2008 Jan;89(Pt 1):48-59</Citation><ArticleIdList><ArticleId IdType="pubmed">18089728</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2001 Dec;146(12):2275-89</Citation><ArticleIdList><ArticleId IdType="pubmed">11811679</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 1998 Jun;55(2):143-56</Citation><ArticleIdList><ArticleId IdType="pubmed">9725667</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 1993 Jun;67(6):2972-80</Citation><ArticleIdList><ArticleId IdType="pubmed">8497041</ArticleId></ArticleIdList></Reference><Reference><Citation>J Antimicrob Chemother. 2005 Feb;55 Suppl 1:i5-i21</Citation><ArticleIdList><ArticleId IdType="pubmed">15709056</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2001 Sep 7;293(5536):1840-2</Citation><ArticleIdList><ArticleId IdType="pubmed">11546875</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2002 Feb;83(Pt 2):413-20</Citation><ArticleIdList><ArticleId IdType="pubmed">11807234</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2007 Dec 26;104(52):20949-54</Citation><ArticleIdList><ArticleId IdType="pubmed">18093945</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2005 Sep;79(18):12058-64</Citation><ArticleIdList><ArticleId IdType="pubmed">16140781</ArticleId></ArticleIdList></Reference><Reference><Citation>Vector Borne Zoonotic Dis. 2008 Dec;8(6):783-90</Citation><ArticleIdList><ArticleId IdType="pubmed">18637721</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2012 Mar 13;109(11):4269-74</Citation><ArticleIdList><ArticleId IdType="pubmed">22371588</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2001 Oct;75(20):9679-86</Citation><ArticleIdList><ArticleId IdType="pubmed">11559800</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2007 Aug;24(8):1596-9</Citation><ArticleIdList><ArticleId IdType="pubmed">17488738</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2000 Aug 15;97(17):9654-8</Citation><ArticleIdList><ArticleId IdType="pubmed">10920197</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 2003 Mar 15;307(2):386-95</Citation><ArticleIdList><ArticleId IdType="pubmed">12667806</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Genes. 2010 Feb;40(1):94-105</Citation><ArticleIdList><ArticleId IdType="pubmed">19916042</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2008 Jan;82(1):220-8</Citation><ArticleIdList><ArticleId IdType="pubmed">17942562</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1988 Jan;85(2):324-8</Citation><ArticleIdList><ArticleId 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