H2N2V1, PubMed, Checkpoint, bibRecord, 000020

Migratory birds in southern Brazil are a source of multiple avian influenza virus subtypes.

Identifieur interne : 000020 ( PubMed/Checkpoint ); précédent : 000019; suivant : 000021

Migratory birds in southern Brazil are a source of multiple avian influenza virus subtypes.

Auteurs : Jansen Araujo [Brésil] ; Maria Virgínia Petry [Brésil] ; Thomas Fabrizio [États-Unis] ; David Walker [États-Unis] ; Tatiana Ometto [Brésil] ; Luciano M. Thomazelli [Brésil] ; Angelo L. Scherer [Brésil] ; Patricia P. Serafini [Brésil] ; Isaac S. Neto [Brésil] ; Scott Krauss [États-Unis] ; Robert G. Webster [États-Unis] ; Richard J. Webby [États-Unis] ; Edison L. Durigon [Brésil]

Source :

Influenza and other respiratory viruses [ 1750-2659 ] ; 2018.

RBID : pubmed:29143465

Descripteurs français

KwdFr :
- Analyse de séquence d'ADN, Animaux, Antigènes viraux (analyse), Brésil, Cloaque (virologie), Grippe chez les oiseaux (virologie), Oiseaux (virologie), Partie orale du pharynx (virologie), Protéines de la matrice virale (génétique), RT-PCR, Variation génétique, Virus de la grippe A (), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification).
MESH :
- analyse : Antigènes viraux.
- génétique : Protéines de la matrice virale, Virus de la grippe A.
- isolement et purification : Virus de la grippe A.
- virologie : Cloaque, Grippe chez les oiseaux, Oiseaux, Partie orale du pharynx.
- Analyse de séquence d'ADN, Animaux, Brésil, RT-PCR, Variation génétique, Virus de la grippe A.
Wicri :
- geographic : Brésil.

English descriptors

KwdEn :
- Animals, Antigens, Viral (analysis), Birds (virology), Brazil, Cloaca (virology), Genetic Variation, Influenza A virus (classification), Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza in Birds (virology), Oropharynx (virology), Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA, Viral Matrix Proteins (genetics).
MESH :
- chemical , analysis : Antigens, Viral.
- chemical , genetics : Viral Matrix Proteins.
- geographic : Brazil.
- classification : Influenza A virus.
- genetics : Influenza A virus.
- isolation & purification : Influenza A virus.
- virology : Birds, Cloaca, Influenza in Birds, Oropharynx.
- Animals, Genetic Variation, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.

Abstract

There is insufficient knowledge about the relation of avian influenza virus (AIV) to migratory birds in South America. Accordingly, we studied samples obtained over a 4-year period (2009-2012) from wild birds at a major wintering site in southern Brazil.

DOI: 10.1111/irv.12519
PubMed: 29143465

Affiliations:

Links toward previous steps (curation, corpus...)

to stream PubMed, to step Corpus: 000027
to stream PubMed, to step Curation: 000027

Links to Exploration step

pubmed:29143465

Le document en format XML

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<author><name sortKey="Scherer, Angelo L" sort="Scherer, Angelo L" uniqKey="Scherer A" first="Angelo L" last="Scherer">Angelo L. Scherer</name>
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<author><name sortKey="Serafini, Patricia P" sort="Serafini, Patricia P" uniqKey="Serafini P" first="Patricia P" last="Serafini">Patricia P. Serafini</name>
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<author><name sortKey="Neto, Isaac S" sort="Neto, Isaac S" uniqKey="Neto I" first="Isaac S" last="Neto">Isaac S. Neto</name>
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<front><div type="abstract" xml:lang="en">There is insufficient knowledge about the relation of avian influenza virus (AIV) to migratory birds in South America. Accordingly, we studied samples obtained over a 4-year period (2009-2012) from wild birds at a major wintering site in southern Brazil.</div>
</front>
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<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29143465</PMID>
<DateCompleted><Year>2019</Year>
<Month>01</Month>
<Day>29</Day>
</DateCompleted>
<DateRevised><Year>2020</Year>
<Month>03</Month>
<Day>06</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1750-2659</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>12</Volume>
<Issue>2</Issue>
<PubDate><Year>2018</Year>
<Month>03</Month>
</PubDate>
</JournalIssue>
<Title>Influenza and other respiratory viruses</Title>
<ISOAbbreviation>Influenza Other Respir Viruses</ISOAbbreviation>
</Journal>
<ArticleTitle>Migratory birds in southern Brazil are a source of multiple avian influenza virus subtypes.</ArticleTitle>
<Pagination><MedlinePgn>220-231</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1111/irv.12519</ELocationID>
<Abstract><AbstractText Label="BACKGROUND">There is insufficient knowledge about the relation of avian influenza virus (AIV) to migratory birds in South America. Accordingly, we studied samples obtained over a 4-year period (2009-2012) from wild birds at a major wintering site in southern Brazil.</AbstractText>
<AbstractText Label="METHODS">We obtained 1212 oropharyngeal/cloacal samples from wild birds at Lagoa do Peixe National Park and screened them for influenza A virus by RT-PCR amplification of the matrix gene. Virus isolates were subjected to genomic sequencing and antigenic characterization.</AbstractText>
<AbstractText Label="RESULTS">Forty-eight samples of 1212 (3.96%) contained detectable influenza virus RNA. Partial viral sequences were obtained from 12 of these samples, showing the presence of H2N2 (1), H6Nx (1), H6N1 (8), H9N2 (1), and H12N5 (1) viruses. As H6 viruses predominated, we generated complete genomes from all 9 H6 viruses. Phylogenetic analyses showed that they were most similar to viruses of South American lineage. The H6N1 viruses caused no disease signs in infected ferrets and, despite genetic differences, were antigenically similar to North American isolates.</AbstractText>
<AbstractText Label="CONCLUSIONS">Lagoa do Peixe National Park is a source of multiple AIV subtypes, with the levels of influenza virus in birds being highest at the end of their wintering period in this region. H6N1 viruses were the predominant subtype identified. These viruses were more similar to viruses of South American lineage than to those of North American lineage.</AbstractText>
<CopyrightInformation>© 2017 The Authors. Influenza and Other Respiratory Viruses Published by John Wiley & Sons Ltd.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Araujo</LastName>
<ForeName>Jansen</ForeName>
<Initials>J</Initials>
<Identifier Source="ORCID">0000-0002-7250-3024</Identifier>
<AffiliationInfo><Affiliation>Laboratório de Virologia Clínica e Molecular do Instituto de Ciências Biomédicas (ICB-II), Universidade de São Paulo, São Paulo, SP, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Petry</LastName>
<ForeName>Maria Virgínia</ForeName>
<Initials>MV</Initials>
<AffiliationInfo><Affiliation>Laboratório de Ornitologia e Animais Marinhos (LOAM), Universidade do Vale do Rio dos Sinos, UNISINOS, São Leopoldo, RS, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Fabrizio</LastName>
<ForeName>Thomas</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Walker</LastName>
<ForeName>David</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Ometto</LastName>
<ForeName>Tatiana</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Laboratório de Virologia Clínica e Molecular do Instituto de Ciências Biomédicas (ICB-II), Universidade de São Paulo, São Paulo, SP, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Thomazelli</LastName>
<ForeName>Luciano M</ForeName>
<Initials>LM</Initials>
<AffiliationInfo><Affiliation>Laboratório de Virologia Clínica e Molecular do Instituto de Ciências Biomédicas (ICB-II), Universidade de São Paulo, São Paulo, SP, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Scherer</LastName>
<ForeName>Angelo L</ForeName>
<Initials>AL</Initials>
<AffiliationInfo><Affiliation>Laboratório de Ornitologia e Animais Marinhos (LOAM), Universidade do Vale do Rio dos Sinos, UNISINOS, São Leopoldo, RS, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Serafini</LastName>
<ForeName>Patricia P</ForeName>
<Initials>PP</Initials>
<AffiliationInfo><Affiliation>Centro Nacional de Pesquisa e Conservação das Aves Silvestres (CEMAVE/ICMBio/MMA), Brazil, Florianópolis, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Neto</LastName>
<ForeName>Isaac S</ForeName>
<Initials>IS</Initials>
<AffiliationInfo><Affiliation>Centro Nacional de Pesquisa e Conservação das Aves Silvestres (CEMAVE/ICMBio/MMA), Brazil, Florianópolis, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Krauss</LastName>
<ForeName>Scott</ForeName>
<Initials>S</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Webster</LastName>
<ForeName>Robert G</ForeName>
<Initials>RG</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Webby</LastName>
<ForeName>Richard J</ForeName>
<Initials>RJ</Initials>
<AffiliationInfo><Affiliation>Department of Infectious Diseases, St. Jude Children's Research Hospital, Memphis, TN, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Durigon</LastName>
<ForeName>Edison L</ForeName>
<Initials>EL</Initials>
<AffiliationInfo><Affiliation>Laboratório de Virologia Clínica e Molecular do Instituto de Ciências Biomédicas (ICB-II), Universidade de São Paulo, São Paulo, SP, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName>
<AccessionNumberList><AccessionNumber>KX620053</AccessionNumber>
<AccessionNumber>KX620135</AccessionNumber>
<AccessionNumber>KX670559</AccessionNumber>
<AccessionNumber>KX670562</AccessionNumber>
<AccessionNumber>KX814376</AccessionNumber>
<AccessionNumber>KX814382</AccessionNumber>
<AccessionNumber>KX827310</AccessionNumber>
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<PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2017</Year>
<Month>12</Month>
<Day>15</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Influenza Other Respir Viruses</MedlineTA>
<NlmUniqueID>101304007</NlmUniqueID>
<ISSNLinking>1750-2640</ISSNLinking>
</MedlineJournalInfo>
<ChemicalList><Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D000956">Antigens, Viral</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="C488936">M1 protein, Influenza A virus</NameOfSubstance>
</Chemical>
<Chemical><RegistryNumber>0</RegistryNumber>
<NameOfSubstance UI="D014763">Viral Matrix Proteins</NameOfSubstance>
</Chemical>
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<CitationSubset>IM</CitationSubset>
<CommentsCorrectionsList><CommentsCorrections RefType="ErratumIn"><RefSource>Influenza Other Respir Viruses. 2018 Jul;12(4):547</RefSource>
<PMID Version="1">29913060</PMID>
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<MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D000956" MajorTopicYN="N">Antigens, Viral</DescriptorName>
<QualifierName UI="Q000032" MajorTopicYN="N">analysis</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001938" MajorTopicYN="N" Type="Geographic">Brazil</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D002988" MajorTopicYN="N">Cloaca</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009960" MajorTopicYN="N">Oropharynx</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014763" MajorTopicYN="N">Viral Matrix Proteins</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Brazil</Keyword>
<Keyword MajorTopicYN="Y">H6N1</Keyword>
<Keyword MajorTopicYN="Y">North America</Keyword>
<Keyword MajorTopicYN="Y">South America</Keyword>
<Keyword MajorTopicYN="Y">avian influenza virus</Keyword>
<Keyword MajorTopicYN="Y">clade</Keyword>
<Keyword MajorTopicYN="Y">migratory birds</Keyword>
<Keyword MajorTopicYN="Y">reassortment</Keyword>
<Keyword MajorTopicYN="Y">waterfowl</Keyword>
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Migratory birds in southern Brazil are a source of multiple avian influenza virus subtypes.

Migratory birds in southern Brazil are a source of multiple avian influenza virus subtypes.

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