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Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding

Identifieur interne : 000004 ( Pmc/Curation ); précédent : 000003; suivant : 000005

Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding

Auteurs : Yan Wu [République populaire de Chine] ; Guangrong Qin [République populaire de Chine] ; Feng Gao [République populaire de Chine] ; Yue Liu [République populaire de Chine] ; Christopher J. Vavricka [République populaire de Chine] ; Jianxun Qi [République populaire de Chine] ; Hualiang Jiang [République populaire de Chine] ; Kunqian Yu [République populaire de Chine] ; George F. Gao [République populaire de Chine]

Source :

RBID : PMC:3609017

Abstract

The recently discovered 150-cavity (formed by loop residues 147–152, N2 numbering) adjacent to the enzymatic active site of group 1 influenza A neuraminidase (NA) has introduced a novel target for the design of next-generation NA inhibitors. However, only group 1 NAs, with the exception of the 2009 pandemic H1N1 NA, possess a 150-cavity, and no 150-cavity has been observed in group 2 NAs. The role of the 150-cavity played in enzymatic activity and inhibitor binding is not well understood. Here, we demonstrate for the first time that oseltamivir carboxylate can induce opening of the rigid closed N2 150-loop and provide a novel mechanism for 150-loop movement using molecular dynamics simulations. Our results provide the structural and biophysical basis of the open form of 150-loop and illustrates that the inherent flexibility and the ligand induced flexibility of the 150-loop should be taken into consideration for future drug design.


Url:
DOI: 10.1038/srep01551
PubMed: 23531861
PubMed Central: 3609017

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PMC:3609017

Le document en format XML

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<p>The recently discovered 150-cavity (formed by loop residues 147–152, N2 numbering) adjacent to the enzymatic active site of group 1 influenza A neuraminidase (NA) has introduced a novel target for the design of next-generation NA inhibitors. However, only group 1 NAs, with the exception of the 2009 pandemic H1N1 NA, possess a 150-cavity, and no 150-cavity has been observed in group 2 NAs. The role of the 150-cavity played in enzymatic activity and inhibitor binding is not well understood. Here, we demonstrate for the first time that oseltamivir carboxylate can induce opening of the rigid closed N2 150-loop and provide a novel mechanism for 150-loop movement using molecular dynamics simulations. Our results provide the structural and biophysical basis of the open form of 150-loop and illustrates that the inherent flexibility and the ligand induced flexibility of the 150-loop should be taken into consideration for future drug design.</p>
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</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Sci Rep</journal-id>
<journal-id journal-id-type="iso-abbrev">Sci Rep</journal-id>
<journal-title-group>
<journal-title>Scientific Reports</journal-title>
</journal-title-group>
<issn pub-type="epub">2045-2322</issn>
<publisher>
<publisher-name>Nature Publishing Group</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">23531861</article-id>
<article-id pub-id-type="pmc">3609017</article-id>
<article-id pub-id-type="pii">srep01551</article-id>
<article-id pub-id-type="doi">10.1038/srep01551</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Induced opening of influenza virus neuraminidase N2 150-loop suggests an important role in inhibitor binding</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Wu</surname>
<given-names>Yan</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qin</surname>
<given-names>Guangrong</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
<xref ref-type="aff" rid="a5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gao</surname>
<given-names>Feng</given-names>
</name>
<xref ref-type="aff" rid="a3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Liu</surname>
<given-names>Yue</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Vavricka</surname>
<given-names>Christopher J.</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a4">4</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Qi</surname>
<given-names>Jianxun</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Jiang</surname>
<given-names>Hualiang</given-names>
</name>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Yu</surname>
<given-names>Kunqian</given-names>
</name>
<xref ref-type="corresp" rid="c1">a</xref>
<xref ref-type="aff" rid="a2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gao</surname>
<given-names>George F.</given-names>
</name>
<xref ref-type="corresp" rid="c2">b</xref>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a4">4</xref>
</contrib>
<aff id="a1">
<label>1</label>
<institution>CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Chinese Academy of Sciences</institution>
, Beichen West Road, Beijing 100101, China</aff>
<aff id="a2">
<label>2</label>
<institution>State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences</institution>
, Shanghai, 201203, China</aff>
<aff id="a3">
<label>3</label>
<institution>Laboratory of Noncoding RNA, Institute of Biophysics, Chinese Academy of Sciences</institution>
, Datun Road, Beijing 100101, China</aff>
<aff id="a4">
<label>4</label>
<institution>Research Network of Immunity and Health (RNIH), Beijing Institutes of Life Science, Chinese Academy of Sciences</institution>
, Lincui East Road, Beijing 100101, China</aff>
<aff id="a5">
<label>5</label>
These authors contributed equally to this work.</aff>
</contrib-group>
<author-notes>
<corresp id="c1">
<label>a</label>
<email>kqyu@mail.shcnc.ac.cn</email>
</corresp>
<corresp id="c2">
<label>b</label>
<email>gaof@im.ac.cn</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>27</day>
<month>03</month>
<year>2013</year>
</pub-date>
<pub-date pub-type="collection">
<year>2013</year>
</pub-date>
<volume>3</volume>
<elocation-id>1551</elocation-id>
<history>
<date date-type="received">
<day>26</day>
<month>10</month>
<year>2012</year>
</date>
<date date-type="accepted">
<day>04</day>
<month>03</month>
<year>2013</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright © 2013, Macmillan Publishers Limited. All rights reserved</copyright-statement>
<copyright-year>2013</copyright-year>
<copyright-holder>Macmillan Publishers Limited. All rights reserved</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/">
<pmc-comment>author-paid</pmc-comment>
<license-p>This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported License. To view a copy of this license, visit
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by-nc-nd/3.0/">http://creativecommons.org/licenses/by-nc-nd/3.0/</ext-link>
</license-p>
</license>
</permissions>
<abstract>
<p>The recently discovered 150-cavity (formed by loop residues 147–152, N2 numbering) adjacent to the enzymatic active site of group 1 influenza A neuraminidase (NA) has introduced a novel target for the design of next-generation NA inhibitors. However, only group 1 NAs, with the exception of the 2009 pandemic H1N1 NA, possess a 150-cavity, and no 150-cavity has been observed in group 2 NAs. The role of the 150-cavity played in enzymatic activity and inhibitor binding is not well understood. Here, we demonstrate for the first time that oseltamivir carboxylate can induce opening of the rigid closed N2 150-loop and provide a novel mechanism for 150-loop movement using molecular dynamics simulations. Our results provide the structural and biophysical basis of the open form of 150-loop and illustrates that the inherent flexibility and the ligand induced flexibility of the 150-loop should be taken into consideration for future drug design.</p>
</abstract>
</article-meta>
</front>
<floats-group>
<fig id="f1">
<label>Figure 1</label>
<caption>
<title>Comparison of oseltamivir carboxylate induced 150-loop conformational change in N2, N1 and N8.</title>
<p>(a) The active sites of free N2 (yellow), N1 (cyan), N8 (lightblue) and oseltamivir carboxylate-bound complex in different soaking conditions are displayed in surface representation. Free N2 (yellow), N2-40 μM-30 min (orange), N1-20 mM-3 days (green) and N8-500 μM-30 min (pink) have no 150-cavity, however free N1, N8, N2-20 mM-1 hour (limon), N1-20 mM-30 min (marine) and N8-20 μM-150 min (magenta) contain a 150-cavity. Oseltamivir carboxylate is shown in wheat stick. (b) Superposition of the 150-loop of free N1, N2, N8 and N1, N2, N8 complexed with oseltamivir carboxylate under different soaking conditions. The 150-loops are shown in cartoon representation, and colors are corresponding to Fig. 1a.</p>
</caption>
<graphic xlink:href="srep01551-f1"></graphic>
</fig>
<fig id="f2">
<label>Figure 2</label>
<caption>
<title>Structural basis of an open 150-loop in N2 neuraminidase.</title>
<p>(a) Overview of the open form of 150-loop in the N2-oseltamivr complex structure with an emphasis on the intermolecular interaction indicated with a violetpurple box. The residues of N2-wild type are shown in limon, while the residues of N2-G147 are shown in wheat. The water molecule is shown in red sphere. (b) Superposition of the 150-loop conformation between free N2 (yellow), N2-oseltamivir closed form (orange) and N2-oseltamivir open form (limon). Compare the interaction between D147 and H150. (c) Superposition of 150-loop conformation between N2-oseltamivir closed form (orange) and N2-G147 after a 1 hour soak with 20 mM oseltamivir carboxylate (wheat). Compare the interaction between Residue 147 and 150. (d) Superposition of 150-loop conformation between N2-oseltamivir closed form (orange) and N2-oseltamivir open form (limon). Compare the interaction between D151 and amino group of oseltamivir carboxylate. The side chain of the residues is displayed in stick representation with hydrogen bonds and salt bridges indicated by dotted lines. The interaction with a distance greater than 3.5 Å is shown as a broken line. The shared residues are highlighted in black and labeled.</p>
</caption>
<graphic xlink:href="srep01551-f2"></graphic>
</fig>
<fig id="f3">
<label>Figure 3</label>
<caption>
<title>Driving force for the opening of the N2 150-loop.</title>
<p>(a) Hydrogen bond occupancy related to the 150-loop in the five simulation systems. Grey: FREE-H150-Neu; green: ZMR-H150-Pos; yellow: OST-NH3-H150-Pos; pink: OST-NH2-H150-Pos; red: OST-NH2-H150-Neu. (b) The opening process of the 150-loop in OST-NH2-H150-Neu trajectory (Chain D) represents the similar conformational change to the crystal structure. Upper panel: 150-cavity volume; down: the distance between alpha carbon of D151 and nitrogen atom of Oseltamivir carboxylate amino group (black), the nearest distance between OD1 or OD2 of D147 and ND1 of H150 (green), and the nearest distance between OD1 or OD2 of D147 and NE atom of R107 in the neighboring molecule (red). (c) Comparison of the interactions between N2 residues and amino group of oseltamivir carboxylate and guanidino group of zanamivir (within 3 Å).</p>
</caption>
<graphic xlink:href="srep01551-f3"></graphic>
</fig>
<table-wrap position="float" id="t1">
<label>Table 1</label>
<caption>
<title>Information of five simulation systems</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">Systems</th>
<th align="center" valign="top" charoff="50">Ligand</th>
<th align="center" valign="top" charoff="50">Charge in C4 group (zanamivir numbering) of inhibitor</th>
<th align="center" valign="top" charoff="50">Protonation state of H150</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center" valign="top" charoff="50">OST-NH3-H150-Pos
<xref ref-type="fn" rid="t1-fn1">*</xref>
</td>
<td align="center" valign="top" charoff="50">Oseltamivir carboxylate</td>
<td align="center" valign="top" charoff="50">Positive</td>
<td align="center" valign="top" charoff="50">Positive</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">OST-NH2-H150-Pos</td>
<td align="center" valign="top" charoff="50">Oseltamivir carboxylate</td>
<td align="center" valign="top" charoff="50">Neutral</td>
<td align="center" valign="top" charoff="50">Positive</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">OST-NH2-H150-Neu</td>
<td align="center" valign="top" charoff="50">Oseltamivir carboxylate</td>
<td align="center" valign="top" charoff="50">Neutral</td>
<td align="center" valign="top" charoff="50">Neutral</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">FREE-H150-Neu</td>
<td align="center" valign="top" charoff="50">-</td>
<td align="center" valign="top" charoff="50">-</td>
<td align="center" valign="top" charoff="50">Neutral</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">ZMR-H150-Pos
<xref ref-type="fn" rid="t1-fn2">**</xref>
</td>
<td align="center" valign="top" charoff="50">Zanamivir</td>
<td align="center" valign="top" charoff="50">Positive</td>
<td align="center" valign="top" charoff="50">Positive</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="t1-fn1">
<p>*OST refers to oseltamivir carboxylate.</p>
</fn>
<fn id="t1-fn2">
<p>**ZMR refers to zanamivir.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<table-wrap position="float" id="t2">
<label>Table 2</label>
<caption>
<title>Population analysis of 150-cavity</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="center"></col>
<col align="center"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50"> </th>
<th colspan="2" align="center" valign="top" charoff="50">Volume rate (%)</th>
</tr>
<tr>
<th align="center" valign="top" charoff="50">System</th>
<th align="center" valign="top" charoff="50">0–40</th>
<th align="center" valign="top" charoff="50">>40</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center" valign="top" charoff="50">OST-NH3-H150-Pos</td>
<td align="char" valign="top" char="." charoff="50">98.1</td>
<td align="char" valign="top" char="." charoff="50">1.9</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">OST-NH2-H150-Pos</td>
<td align="char" valign="top" char="." charoff="50">59.2</td>
<td align="char" valign="top" char="." charoff="50">40.8</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">OST-NH2-H150-Neu</td>
<td align="char" valign="top" char="." charoff="50">39.9</td>
<td align="char" valign="top" char="." charoff="50">60.1</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">FREE-H150-Neu</td>
<td align="char" valign="top" char="." charoff="50">72</td>
<td align="char" valign="top" char="." charoff="50">28</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">ZMR-H150-Pos</td>
<td align="char" valign="top" char="." charoff="50">97.8</td>
<td align="char" valign="top" char="." charoff="50">2.2</td>
</tr>
</tbody>
</table>
</table-wrap>
<table-wrap position="float" id="t3">
<label>Table 3</label>
<caption>
<title>Data collection and refinement statistics</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
<col align="center"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">Parameter</th>
<th align="center" valign="top" charoff="50">FreeN2</th>
<th align="center" valign="top" charoff="50">N2-oseltamivir open form</th>
<th align="center" valign="top" charoff="50">N2-oseltamivir closed form</th>
<th align="center" valign="top" charoff="50">N2-G147-oseltamivir</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="center" valign="top" charoff="50">
<bold>Data collecting</bold>
</td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Space group</td>
<td align="center" valign="top" charoff="50">C222
<sub>1</sub>
</td>
<td align="center" valign="top" charoff="50">C222
<sub>1</sub>
</td>
<td align="center" valign="top" charoff="50">C222
<sub>1</sub>
</td>
<td align="center" valign="top" charoff="50">C222
<sub>1</sub>
</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Unit cell dimensions (a, b, c)</td>
<td align="center" valign="top" charoff="50">114.83, 39.47, 140.05</td>
<td align="center" valign="top" charoff="50">114.91, 139.39, 140.24</td>
<td align="center" valign="top" charoff="50">115.43, 139.11, 140.00</td>
<td align="center" valign="top" charoff="50">114.33, 139.31, 140.05</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Unit cell dimensions (α, β, γ)</td>
<td align="center" valign="top" charoff="50">90.00, 90.00, 90.00</td>
<td align="center" valign="top" charoff="50">90.00, 90.00, 90.00</td>
<td align="center" valign="top" charoff="50">90.00, 90.00, 90.00</td>
<td align="center" valign="top" charoff="50">90.00, 90.00, 90.00</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Resolution range (Å)
<xref ref-type="fn" rid="t3-fn1">a</xref>
</td>
<td align="center" valign="top" charoff="50">50.00–1.80 (1.86–1.80)</td>
<td align="center" valign="top" charoff="50">50.00–1.60 (1.65–1.60)</td>
<td align="center" valign="top" charoff="50">50.00–1.80 (1.86–1.80)</td>
<td align="center" valign="top" charoff="50">50.00–2.20 (2.28–2.20)</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">R
<sub>merge</sub>
(%)
<xref ref-type="fn" rid="t3-fn2">b</xref>
</td>
<td align="center" valign="top" charoff="50">10.2 (54.7)</td>
<td align="center" valign="top" charoff="50">8.1 (53.8)</td>
<td align="center" valign="top" charoff="50">9.7 (49.2)</td>
<td align="center" valign="top" charoff="50">17.3 (55.4)</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">I/σ</td>
<td align="center" valign="top" charoff="50">17.59 (2.54)</td>
<td align="center" valign="top" charoff="50">19.1 (2.29)</td>
<td align="center" valign="top" charoff="50">20.19 (4.3)</td>
<td align="center" valign="top" charoff="50">11.17 (3.53)</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Redundancy</td>
<td align="center" valign="top" charoff="50">6.2 (5.9)</td>
<td align="center" valign="top" charoff="50">4.9 (4.7)</td>
<td align="center" valign="top" charoff="50">6.6 (6.5)</td>
<td align="center" valign="top" charoff="50">7.2 (7.2)</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Completeness (%)</td>
<td align="center" valign="top" charoff="50">96.0 (98.1)</td>
<td align="center" valign="top" charoff="50">98.4 (93.9)</td>
<td align="center" valign="top" charoff="50">100 (100)</td>
<td align="center" valign="top" charoff="50">99.7 (100)</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">
<bold>Refinement</bold>
</td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Resolution (Å)</td>
<td align="center" valign="top" charoff="50">37.45–1.80</td>
<td align="center" valign="top" charoff="50">30.00–1.60</td>
<td align="center" valign="top" charoff="50">38.75–1.80</td>
<td align="center" valign="top" charoff="50">37.40–2.20</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Rwork (%)
<xref ref-type="fn" rid="t3-fn3">c</xref>
</td>
<td align="char" valign="top" char="." charoff="50">16.0</td>
<td align="char" valign="top" char="." charoff="50">13.7</td>
<td align="char" valign="top" char="." charoff="50">14.9</td>
<td align="char" valign="top" char="." charoff="50">19.9</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Rfree (%)
<xref ref-type="fn" rid="t3-fn4">d</xref>
</td>
<td align="char" valign="top" char="." charoff="50">17.8</td>
<td align="char" valign="top" char="." charoff="50">17.0</td>
<td align="char" valign="top" char="." charoff="50">16.9</td>
<td align="char" valign="top" char="." charoff="50">23.8</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">
<bold>RMSDs</bold>
</td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Bond lengths (Å)</td>
<td align="char" valign="top" char="." charoff="50">0.006</td>
<td align="char" valign="top" char="." charoff="50">0.007</td>
<td align="char" valign="top" char="." charoff="50">0.007</td>
<td align="char" valign="top" char="." charoff="50">0.006</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Bond angles (°)</td>
<td align="char" valign="top" char="." charoff="50">1.199</td>
<td align="char" valign="top" char="." charoff="50">1.231</td>
<td align="char" valign="top" char="." charoff="50">1.219</td>
<td align="char" valign="top" char="." charoff="50">1.245</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">
<bold>Ramachandran plot Quality</bold>
</td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
<td align="left" valign="top" charoff="50"> </td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Favored (%)</td>
<td align="char" valign="top" char="." charoff="50">96.5</td>
<td align="char" valign="top" char="." charoff="50">96.6</td>
<td align="char" valign="top" char="." charoff="50">96.5</td>
<td align="char" valign="top" char="." charoff="50">95.9</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Allowed (%)</td>
<td align="char" valign="top" char="." charoff="50">3.5</td>
<td align="char" valign="top" char="." charoff="50">3.4</td>
<td align="char" valign="top" char="." charoff="50">3.4</td>
<td align="char" valign="top" char="." charoff="50">4.1</td>
</tr>
<tr>
<td align="center" valign="top" charoff="50">Outlier (%)</td>
<td align="char" valign="top" char="." charoff="50">0</td>
<td align="char" valign="top" char="." charoff="50">0</td>
<td align="char" valign="top" char="." charoff="50">0</td>
<td align="char" valign="top" char="." charoff="50">0</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="t3-fn1">
<p>
<sup>a</sup>
Value in parentheses refer to the highest resolution shell of data.</p>
</fn>
<fn id="t3-fn2">
<p>
<sup>b</sup>
Rmerge = Σhkl |I-|/ΣhklI where I is the intensity of unique relfection hkl and is the average over symmetry-related observations of unique reflection hkl.</p>
</fn>
<fn id="t3-fn3">
<p>
<sup>c</sup>
Rwork = Σ|Fobs - Fcalc|/ΣFobs where Fobs and Fcalc are the observed and calculated structure factors, respectively.</p>
</fn>
<fn id="t3-fn4">
<p>
<sup>d</sup>
Rfree is calculated as for Rcryst but using 5% of reflections sequestered before refinement.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</floats-group>
</pmc>
</record>

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