Serveur d'exploration H2N2

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

The Genomic Contributions of Avian H1N1 Influenza A Viruses to the Evolution of Mammalian Strains

Identifieur interne : 000351 ( Pmc/Checkpoint ); précédent : 000350; suivant : 000352

The Genomic Contributions of Avian H1N1 Influenza A Viruses to the Evolution of Mammalian Strains

Auteurs : Zeynep A. Koçer [États-Unis] ; Robert Carter [États-Unis] ; Gang Wu [États-Unis] ; Jinghui Zhang [États-Unis] ; Robert G. Webster [États-Unis, Arabie saoudite]

Source :

RBID : PMC:4514870

Abstract

Among the influenza A viruses (IAVs) in wild aquatic birds, only H1, H2, and H3 subtypes have caused epidemics in humans. H1N1 viruses of avian origin have also caused 3 of 5 pandemics. To understand the reappearance of H1N1 in the context of pandemic emergence, we investigated whether avian H1N1 IAVs have contributed to the evolution of human, swine, and 2009 pandemic H1N1 IAVs. On the basis of phylogenetic analysis, we concluded that the polymerase gene segments (especially PB2 and PA) circulating in North American avian H1N1 IAVs have been reintroduced to swine multiple times, resulting in different lineages that led to the emergence of the 2009 pandemic H1N1 IAVs. Moreover, the similar topologies of hemagglutinin and nucleoprotein and neuraminidase and matrix gene segments suggest that each surface glycoprotein coevolved with an internal gene segment within the H1N1 subtype. The genotype of avian H1N1 IAVs of Charadriiformes origin isolated in 2009 differs from that of avian H1N1 IAVs of Anseriformes origin. When the antigenic sites in the hemagglutinin of all 31 North American avian H1N1 IAVs were considered, 60%-80% of the amino acids at the antigenic sites were identical to those in 1918 and/or 2009 pandemic H1N1 viruses. Thus, although the pathogenicity of avian H1N1 IAVs could not be inferred from the phylogeny due to the small dataset, the evolutionary process within the H1N1 IAV subtype suggests that the circulation of H1N1 IAVs in wild birds poses a continuous threat for future influenza pandemics in humans.


Url:
DOI: 10.1371/journal.pone.0133795
PubMed: 26208281
PubMed Central: 4514870


Affiliations:


Links toward previous steps (curation, corpus...)


Links to Exploration step

PMC:4514870

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">The Genomic Contributions of Avian H1N1 Influenza A Viruses to the Evolution of Mammalian Strains</title>
<author>
<name sortKey="Kocer, Zeynep A" sort="Kocer, Zeynep A" uniqKey="Kocer Z" first="Zeynep A." last="Koçer">Zeynep A. Koçer</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Carter, Robert" sort="Carter, Robert" uniqKey="Carter R" first="Robert" last="Carter">Robert Carter</name>
<affiliation wicri:level="2">
<nlm:aff id="aff002">
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Gang" sort="Wu, Gang" uniqKey="Wu G" first="Gang" last="Wu">Gang Wu</name>
<affiliation wicri:level="2">
<nlm:aff id="aff002">
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Jinghui" sort="Zhang, Jinghui" uniqKey="Zhang J" first="Jinghui" last="Zhang">Jinghui Zhang</name>
<affiliation wicri:level="2">
<nlm:aff id="aff002">
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Webster, Robert G" sort="Webster, Robert G" uniqKey="Webster R" first="Robert G." last="Webster">Robert G. Webster</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff003">
<addr-line>Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia</addr-line>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah</wicri:regionArea>
<wicri:noRegion>Jeddah</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">26208281</idno>
<idno type="pmc">4514870</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4514870</idno>
<idno type="RBID">PMC:4514870</idno>
<idno type="doi">10.1371/journal.pone.0133795</idno>
<date when="2015">2015</date>
<idno type="wicri:Area/Pmc/Corpus">000A61</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">000A61</idno>
<idno type="wicri:Area/Pmc/Curation">000A61</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">000A61</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000351</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000351</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">The Genomic Contributions of Avian H1N1 Influenza A Viruses to the Evolution of Mammalian Strains</title>
<author>
<name sortKey="Kocer, Zeynep A" sort="Kocer, Zeynep A" uniqKey="Kocer Z" first="Zeynep A." last="Koçer">Zeynep A. Koçer</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Carter, Robert" sort="Carter, Robert" uniqKey="Carter R" first="Robert" last="Carter">Robert Carter</name>
<affiliation wicri:level="2">
<nlm:aff id="aff002">
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Wu, Gang" sort="Wu, Gang" uniqKey="Wu G" first="Gang" last="Wu">Gang Wu</name>
<affiliation wicri:level="2">
<nlm:aff id="aff002">
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Zhang, Jinghui" sort="Zhang, Jinghui" uniqKey="Zhang J" first="Jinghui" last="Zhang">Jinghui Zhang</name>
<affiliation wicri:level="2">
<nlm:aff id="aff002">
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Webster, Robert G" sort="Webster, Robert G" uniqKey="Webster R" first="Robert G." last="Webster">Robert G. Webster</name>
<affiliation wicri:level="2">
<nlm:aff id="aff001">
<addr-line>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee</wicri:regionArea>
<placeName>
<region type="state">Tennessee</region>
</placeName>
</affiliation>
<affiliation wicri:level="1">
<nlm:aff id="aff003">
<addr-line>Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia</addr-line>
</nlm:aff>
<country xml:lang="fr">Arabie saoudite</country>
<wicri:regionArea>Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah</wicri:regionArea>
<wicri:noRegion>Jeddah</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series>
<title level="j">PLoS ONE</title>
<idno type="eISSN">1932-6203</idno>
<imprint>
<date when="2015">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>Among the influenza A viruses (IAVs) in wild aquatic birds, only H1, H2, and H3 subtypes have caused epidemics in humans. H1N1 viruses of avian origin have also caused 3 of 5 pandemics. To understand the reappearance of H1N1 in the context of pandemic emergence, we investigated whether avian H1N1 IAVs have contributed to the evolution of human, swine, and 2009 pandemic H1N1 IAVs. On the basis of phylogenetic analysis, we concluded that the polymerase gene segments (especially PB2 and PA) circulating in North American avian H1N1 IAVs have been reintroduced to swine multiple times, resulting in different lineages that led to the emergence of the 2009 pandemic H1N1 IAVs. Moreover, the similar topologies of hemagglutinin and nucleoprotein and neuraminidase and matrix gene segments suggest that each surface glycoprotein coevolved with an internal gene segment within the H1N1 subtype. The genotype of avian H1N1 IAVs of Charadriiformes origin isolated in 2009 differs from that of avian H1N1 IAVs of Anseriformes origin. When the antigenic sites in the hemagglutinin of all 31 North American avian H1N1 IAVs were considered, 60%-80% of the amino acids at the antigenic sites were identical to those in 1918 and/or 2009 pandemic H1N1 viruses. Thus, although the pathogenicity of avian H1N1 IAVs could not be inferred from the phylogeny due to the small dataset, the evolutionary process within the H1N1 IAV subtype suggests that the circulation of H1N1 IAVs in wild birds poses a continuous threat for future influenza pandemics in humans.</p>
</div>
</front>
<back>
<div1 type="bibliography">
<listBibl>
<biblStruct>
<analytic>
<author>
<name sortKey="Chen, W" uniqKey="Chen W">W Chen</name>
</author>
<author>
<name sortKey="Calvo, Pa" uniqKey="Calvo P">PA Calvo</name>
</author>
<author>
<name sortKey="Malide, D" uniqKey="Malide D">D Malide</name>
</author>
<author>
<name sortKey="Gibbs, J" uniqKey="Gibbs J">J Gibbs</name>
</author>
<author>
<name sortKey="Schubert, U" uniqKey="Schubert U">U Schubert</name>
</author>
<author>
<name sortKey="Bacik, I" uniqKey="Bacik I">I Bacik</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Jagger, Bw" uniqKey="Jagger B">BW Jagger</name>
</author>
<author>
<name sortKey="Wise, Hm" uniqKey="Wise H">HM Wise</name>
</author>
<author>
<name sortKey="Kash, Jc" uniqKey="Kash J">JC Kash</name>
</author>
<author>
<name sortKey="Walters, Ka" uniqKey="Walters K">KA Walters</name>
</author>
<author>
<name sortKey="Wills, Nm" uniqKey="Wills N">NM Wills</name>
</author>
<author>
<name sortKey="Xiao, Yl" uniqKey="Xiao Y">YL Xiao</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Steinhauer, Da" uniqKey="Steinhauer D">DA Steinhauer</name>
</author>
<author>
<name sortKey="Skehel, Jj" uniqKey="Skehel J">JJ Skehel</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Wise, Hm" uniqKey="Wise H">HM Wise</name>
</author>
<author>
<name sortKey="Foeglein, A" uniqKey="Foeglein A">A Foeglein</name>
</author>
<author>
<name sortKey="Sun, J" uniqKey="Sun J">J Sun</name>
</author>
<author>
<name sortKey="Dalton, Rm" uniqKey="Dalton R">RM Dalton</name>
</author>
<author>
<name sortKey="Patel, S" uniqKey="Patel S">S Patel</name>
</author>
<author>
<name sortKey="Howard, W" uniqKey="Howard W">W Howard</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Webster, Rg" uniqKey="Webster R">RG Webster</name>
</author>
<author>
<name sortKey="Bean, Wj" uniqKey="Bean W">WJ Bean</name>
</author>
<author>
<name sortKey="Gorman, Ot" uniqKey="Gorman O">OT Gorman</name>
</author>
<author>
<name sortKey="Chambers, Tm" uniqKey="Chambers T">TM Chambers</name>
</author>
<author>
<name sortKey="Kawaoka, Y" uniqKey="Kawaoka Y">Y Kawaoka</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Fouchier, Ra" uniqKey="Fouchier R">RA Fouchier</name>
</author>
<author>
<name sortKey="Munster, V" uniqKey="Munster V">V Munster</name>
</author>
<author>
<name sortKey="Wallensten, A" uniqKey="Wallensten A">A Wallensten</name>
</author>
<author>
<name sortKey="Bestebroer, Tm" uniqKey="Bestebroer T">TM Bestebroer</name>
</author>
<author>
<name sortKey="Herfst, S" uniqKey="Herfst S">S Herfst</name>
</author>
<author>
<name sortKey="Smith, D" uniqKey="Smith D">D Smith</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Tong, S" uniqKey="Tong S">S Tong</name>
</author>
<author>
<name sortKey="Li, Y" uniqKey="Li Y">Y Li</name>
</author>
<author>
<name sortKey="Rivailler, P" uniqKey="Rivailler P">P Rivailler</name>
</author>
<author>
<name sortKey="Conrardy, C" uniqKey="Conrardy C">C Conrardy</name>
</author>
<author>
<name sortKey="Castillo, Da" uniqKey="Castillo D">DA Castillo</name>
</author>
<author>
<name sortKey="Chen, Lm" uniqKey="Chen L">LM Chen</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Tong, S" uniqKey="Tong S">S Tong</name>
</author>
<author>
<name sortKey="Zhu, X" uniqKey="Zhu X">X Zhu</name>
</author>
<author>
<name sortKey="Li, Y" uniqKey="Li Y">Y Li</name>
</author>
<author>
<name sortKey="Shi, M" uniqKey="Shi M">M Shi</name>
</author>
<author>
<name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name>
</author>
<author>
<name sortKey="Bourgeois, M" uniqKey="Bourgeois M">M Bourgeois</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Zhu, X" uniqKey="Zhu X">X Zhu</name>
</author>
<author>
<name sortKey="Yang, H" uniqKey="Yang H">H Yang</name>
</author>
<author>
<name sortKey="Guo, Z" uniqKey="Guo Z">Z Guo</name>
</author>
<author>
<name sortKey="Yu, W" uniqKey="Yu W">W Yu</name>
</author>
<author>
<name sortKey="Carney, Pj" uniqKey="Carney P">PJ Carney</name>
</author>
<author>
<name sortKey="Li, Y" uniqKey="Li Y">Y Li</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Krauss, S" uniqKey="Krauss S">S Krauss</name>
</author>
<author>
<name sortKey="Obert, Ca" uniqKey="Obert C">CA Obert</name>
</author>
<author>
<name sortKey="Franks, J" uniqKey="Franks J">J Franks</name>
</author>
<author>
<name sortKey="Walker, D" uniqKey="Walker D">D Walker</name>
</author>
<author>
<name sortKey="Jones, K" uniqKey="Jones K">K Jones</name>
</author>
<author>
<name sortKey="Seiler, P" uniqKey="Seiler P">P Seiler</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Kanegae, Y" uniqKey="Kanegae Y">Y Kanegae</name>
</author>
<author>
<name sortKey="Sugita, S" uniqKey="Sugita S">S Sugita</name>
</author>
<author>
<name sortKey="Shortridge, Kf" uniqKey="Shortridge K">KF Shortridge</name>
</author>
<author>
<name sortKey="Yoshioka, Y" uniqKey="Yoshioka Y">Y Yoshioka</name>
</author>
<author>
<name sortKey="Nerome, K" uniqKey="Nerome K">K Nerome</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Reid, Ah" uniqKey="Reid A">AH Reid</name>
</author>
<author>
<name sortKey="Fanning, Tg" uniqKey="Fanning T">TG Fanning</name>
</author>
<author>
<name sortKey="Hultin, Jv" uniqKey="Hultin J">JV Hultin</name>
</author>
<author>
<name sortKey="Taubenberger, Jk" uniqKey="Taubenberger J">JK Taubenberger</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Scholtissek, C" uniqKey="Scholtissek C">C Scholtissek</name>
</author>
<author>
<name sortKey="Burger, H" uniqKey="Burger H">H Burger</name>
</author>
<author>
<name sortKey="Bachmann, Pa" uniqKey="Bachmann P">PA Bachmann</name>
</author>
<author>
<name sortKey="Hannoun, C" uniqKey="Hannoun C">C Hannoun</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Garten, Rj" uniqKey="Garten R">RJ Garten</name>
</author>
<author>
<name sortKey="Davis, Ct" uniqKey="Davis C">CT Davis</name>
</author>
<author>
<name sortKey="Russell, Ca" uniqKey="Russell C">CA Russell</name>
</author>
<author>
<name sortKey="Shu, B" uniqKey="Shu B">B Shu</name>
</author>
<author>
<name sortKey="Lindstrom, S" uniqKey="Lindstrom S">S Lindstrom</name>
</author>
<author>
<name sortKey="Balish, A" uniqKey="Balish A">A Balish</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Smith, Gj" uniqKey="Smith G">GJ Smith</name>
</author>
<author>
<name sortKey="Vijaykrishna, D" uniqKey="Vijaykrishna D">D Vijaykrishna</name>
</author>
<author>
<name sortKey="Bahl, J" uniqKey="Bahl J">J Bahl</name>
</author>
<author>
<name sortKey="Lycett, Sj" uniqKey="Lycett S">SJ Lycett</name>
</author>
<author>
<name sortKey="Worobey, M" uniqKey="Worobey M">M Worobey</name>
</author>
<author>
<name sortKey="Pybus, Og" uniqKey="Pybus O">OG Pybus</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Taubenberger, Jk" uniqKey="Taubenberger J">JK Taubenberger</name>
</author>
<author>
<name sortKey="Morens, Dm" uniqKey="Morens D">DM Morens</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Kocer, Za" uniqKey="Kocer Z">ZA Kocer</name>
</author>
<author>
<name sortKey="Krauss, S" uniqKey="Krauss S">S Krauss</name>
</author>
<author>
<name sortKey="Stallknecht, De" uniqKey="Stallknecht D">DE Stallknecht</name>
</author>
<author>
<name sortKey="Rehg, Je" uniqKey="Rehg J">JE Rehg</name>
</author>
<author>
<name sortKey="Webster, Rg" uniqKey="Webster R">RG Webster</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Edgar, Rc" uniqKey="Edgar R">RC Edgar</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Drummond, Aj" uniqKey="Drummond A">AJ Drummond</name>
</author>
<author>
<name sortKey="Suchard, Ma" uniqKey="Suchard M">MA Suchard</name>
</author>
<author>
<name sortKey="Xie, D" uniqKey="Xie D">D Xie</name>
</author>
<author>
<name sortKey="Rambaut, A" uniqKey="Rambaut A">A Rambaut</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Shapiro, B" uniqKey="Shapiro B">B Shapiro</name>
</author>
<author>
<name sortKey="Rambaut, A" uniqKey="Rambaut A">A Rambaut</name>
</author>
<author>
<name sortKey="Drummond, Aj" uniqKey="Drummond A">AJ Drummond</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Drummond, Aj" uniqKey="Drummond A">AJ Drummond</name>
</author>
<author>
<name sortKey="Ho, Sy" uniqKey="Ho S">SY Ho</name>
</author>
<author>
<name sortKey="Phillips, Mj" uniqKey="Phillips M">MJ Phillips</name>
</author>
<author>
<name sortKey="Rambaut, A" uniqKey="Rambaut A">A Rambaut</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Jenkins, Gm" uniqKey="Jenkins G">GM Jenkins</name>
</author>
<author>
<name sortKey="Rambaut, A" uniqKey="Rambaut A">A Rambaut</name>
</author>
<author>
<name sortKey="Pybus, Og" uniqKey="Pybus O">OG Pybus</name>
</author>
<author>
<name sortKey="Holmes, Ec" uniqKey="Holmes E">EC Holmes</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Kocer, Za" uniqKey="Kocer Z">ZA Kocer</name>
</author>
<author>
<name sortKey="Obenauer, J" uniqKey="Obenauer J">J Obenauer</name>
</author>
<author>
<name sortKey="Zaraket, H" uniqKey="Zaraket H">H Zaraket</name>
</author>
<author>
<name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name>
</author>
<author>
<name sortKey="Rehg, Je" uniqKey="Rehg J">JE Rehg</name>
</author>
<author>
<name sortKey="Russell, Cj" uniqKey="Russell C">CJ Russell</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Kocer, Za" uniqKey="Kocer Z">ZA Kocer</name>
</author>
<author>
<name sortKey="Fan, Y" uniqKey="Fan Y">Y Fan</name>
</author>
<author>
<name sortKey="Huether, R" uniqKey="Huether R">R Huether</name>
</author>
<author>
<name sortKey="Obenauer, J" uniqKey="Obenauer J">J Obenauer</name>
</author>
<author>
<name sortKey="Webby, Rj" uniqKey="Webby R">RJ Webby</name>
</author>
<author>
<name sortKey="Zhang, J" uniqKey="Zhang J">J Zhang</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Treanor, Jj" uniqKey="Treanor J">JJ Treanor</name>
</author>
<author>
<name sortKey="Snyder, Mh" uniqKey="Snyder M">MH Snyder</name>
</author>
<author>
<name sortKey="London, Wt" uniqKey="London W">WT London</name>
</author>
<author>
<name sortKey="Murphy, Br" uniqKey="Murphy B">BR Murphy</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Obenauer, Jc" uniqKey="Obenauer J">JC Obenauer</name>
</author>
<author>
<name sortKey="Denson, J" uniqKey="Denson J">J Denson</name>
</author>
<author>
<name sortKey="Mehta, Pk" uniqKey="Mehta P">PK Mehta</name>
</author>
<author>
<name sortKey="Su, X" uniqKey="Su X">X Su</name>
</author>
<author>
<name sortKey="Mukatira, S" uniqKey="Mukatira S">S Mukatira</name>
</author>
<author>
<name sortKey="Finkelstein, Db" uniqKey="Finkelstein D">DB Finkelstein</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Krauss, S" uniqKey="Krauss S">S Krauss</name>
</author>
<author>
<name sortKey="Stallknecht, De" uniqKey="Stallknecht D">DE Stallknecht</name>
</author>
<author>
<name sortKey="Negovetich, Nj" uniqKey="Negovetich N">NJ Negovetich</name>
</author>
<author>
<name sortKey="Niles, Lj" uniqKey="Niles L">LJ Niles</name>
</author>
<author>
<name sortKey="Webby, Rj" uniqKey="Webby R">RJ Webby</name>
</author>
<author>
<name sortKey="Webster, Rg" uniqKey="Webster R">RG Webster</name>
</author>
</analytic>
</biblStruct>
<biblStruct>
<analytic>
<author>
<name sortKey="Igarashi, M" uniqKey="Igarashi M">M Igarashi</name>
</author>
<author>
<name sortKey="Ito, K" uniqKey="Ito K">K Ito</name>
</author>
<author>
<name sortKey="Yoshida, R" uniqKey="Yoshida R">R Yoshida</name>
</author>
<author>
<name sortKey="Tomabechi, D" uniqKey="Tomabechi D">D Tomabechi</name>
</author>
<author>
<name sortKey="Kida, H" uniqKey="Kida H">H Kida</name>
</author>
<author>
<name sortKey="Takada, A" uniqKey="Takada A">A Takada</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">PLoS One</journal-id>
<journal-id journal-id-type="iso-abbrev">PLoS ONE</journal-id>
<journal-id journal-id-type="publisher-id">plos</journal-id>
<journal-id journal-id-type="pmc">plosone</journal-id>
<journal-title-group>
<journal-title>PLoS ONE</journal-title>
</journal-title-group>
<issn pub-type="epub">1932-6203</issn>
<publisher>
<publisher-name>Public Library of Science</publisher-name>
<publisher-loc>San Francisco, CA USA</publisher-loc>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">26208281</article-id>
<article-id pub-id-type="pmc">4514870</article-id>
<article-id pub-id-type="doi">10.1371/journal.pone.0133795</article-id>
<article-id pub-id-type="publisher-id">PONE-D-15-15656</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Research Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>The Genomic Contributions of Avian H1N1 Influenza A Viruses to the Evolution of Mammalian Strains</article-title>
<alt-title alt-title-type="running-head">Evolution of H1N1 Influenza A Virus Strains</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Koçer</surname>
<given-names>Zeynep A.</given-names>
</name>
<xref ref-type="aff" rid="aff001">
<sup>1</sup>
</xref>
<xref ref-type="author-notes" rid="currentaff001">
<sup>¤</sup>
</xref>
</contrib>
<contrib contrib-type="author" equal-contrib="yes">
<name>
<surname>Carter</surname>
<given-names>Robert</given-names>
</name>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wu</surname>
<given-names>Gang</given-names>
</name>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Zhang</surname>
<given-names>Jinghui</given-names>
</name>
<xref ref-type="aff" rid="aff002">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Webster</surname>
<given-names>Robert G.</given-names>
</name>
<xref ref-type="aff" rid="aff001">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff003">
<sup>3</sup>
</xref>
<xref rid="cor001" ref-type="corresp">*</xref>
</contrib>
</contrib-group>
<aff id="aff001">
<label>1</label>
<addr-line>Department of Infectious Diseases, Division of Virology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</aff>
<aff id="aff002">
<label>2</label>
<addr-line>Department of Computational Biology, St. Jude Children’s Research Hospital, Memphis, Tennessee, United States of America</addr-line>
</aff>
<aff id="aff003">
<label>3</label>
<addr-line>Department of Biological Sciences, Faculty of Science, King Abdulaziz University, Jeddah, Saudi Arabia</addr-line>
</aff>
<contrib-group>
<contrib contrib-type="editor">
<name>
<surname>Digard</surname>
<given-names>Paul</given-names>
</name>
<role>Editor</role>
<xref ref-type="aff" rid="edit1"></xref>
</contrib>
</contrib-group>
<aff id="edit1">
<addr-line>University of Edinburgh, UNITED KINGDOM</addr-line>
</aff>
<author-notes>
<fn fn-type="COI-statement" id="coi001">
<p>
<bold>Competing Interests: </bold>
The authors have declared that no competing interests exist.</p>
</fn>
<fn fn-type="con" id="contrib001">
<p>Conceived and designed the experiments: ZAK RGW. Analyzed the data: ZAK RC. Wrote the paper: ZAK RC GW JZ RGW. Provided supervisory role: GW JZ RGW.</p>
</fn>
<fn fn-type="current-aff" id="currentaff001">
<label>¤</label>
<p>Current address: Influenza Research Institute, Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, Wisconsin, United States of America</p>
</fn>
<corresp id="cor001">* E-mail:
<email>robert.webster@stjude.org</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>7</month>
<year>2015</year>
</pub-date>
<pub-date pub-type="collection">
<year>2015</year>
</pub-date>
<volume>10</volume>
<issue>7</issue>
<elocation-id>e0133795</elocation-id>
<history>
<date date-type="received">
<day>10</day>
<month>4</month>
<year>2015</year>
</date>
<date date-type="accepted">
<day>1</day>
<month>7</month>
<year>2015</year>
</date>
</history>
<permissions>
<copyright-statement>© 2015 Koçer et al</copyright-statement>
<copyright-year>2015</copyright-year>
<copyright-holder>Koçer et al</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<license-p>This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.</license-p>
</license>
</permissions>
<self-uri content-type="pdf" xlink:type="simple" xlink:href="pone.0133795.pdf"></self-uri>
<abstract>
<p>Among the influenza A viruses (IAVs) in wild aquatic birds, only H1, H2, and H3 subtypes have caused epidemics in humans. H1N1 viruses of avian origin have also caused 3 of 5 pandemics. To understand the reappearance of H1N1 in the context of pandemic emergence, we investigated whether avian H1N1 IAVs have contributed to the evolution of human, swine, and 2009 pandemic H1N1 IAVs. On the basis of phylogenetic analysis, we concluded that the polymerase gene segments (especially PB2 and PA) circulating in North American avian H1N1 IAVs have been reintroduced to swine multiple times, resulting in different lineages that led to the emergence of the 2009 pandemic H1N1 IAVs. Moreover, the similar topologies of hemagglutinin and nucleoprotein and neuraminidase and matrix gene segments suggest that each surface glycoprotein coevolved with an internal gene segment within the H1N1 subtype. The genotype of avian H1N1 IAVs of Charadriiformes origin isolated in 2009 differs from that of avian H1N1 IAVs of Anseriformes origin. When the antigenic sites in the hemagglutinin of all 31 North American avian H1N1 IAVs were considered, 60%-80% of the amino acids at the antigenic sites were identical to those in 1918 and/or 2009 pandemic H1N1 viruses. Thus, although the pathogenicity of avian H1N1 IAVs could not be inferred from the phylogeny due to the small dataset, the evolutionary process within the H1N1 IAV subtype suggests that the circulation of H1N1 IAVs in wild birds poses a continuous threat for future influenza pandemics in humans.</p>
</abstract>
<funding-group>
<funding-statement>This work was supported by Contract No. HHSN266200700005C from the National Institute of Allergy and Infectious Disease, National Institutes of Health, Department of Health and Human Services, and by ALSAC (American Lebanese Syrian Associated Charities). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.</funding-statement>
</funding-group>
<counts>
<fig-count count="4"></fig-count>
<table-count count="1"></table-count>
<page-count count="14"></page-count>
</counts>
<custom-meta-group>
<custom-meta id="data-availability">
<meta-name>Data Availability</meta-name>
<meta-value>All relevant data are within the paper and Supporting Information files.</meta-value>
</custom-meta>
</custom-meta-group>
</article-meta>
<notes>
<title>Data Availability</title>
<p>All relevant data are within the paper and Supporting Information files.</p>
</notes>
</front>
</pmc>
<affiliations>
<list>
<country>
<li>Arabie saoudite</li>
<li>États-Unis</li>
</country>
<region>
<li>Tennessee</li>
</region>
</list>
<tree>
<country name="États-Unis">
<region name="Tennessee">
<name sortKey="Kocer, Zeynep A" sort="Kocer, Zeynep A" uniqKey="Kocer Z" first="Zeynep A." last="Koçer">Zeynep A. Koçer</name>
</region>
<name sortKey="Carter, Robert" sort="Carter, Robert" uniqKey="Carter R" first="Robert" last="Carter">Robert Carter</name>
<name sortKey="Webster, Robert G" sort="Webster, Robert G" uniqKey="Webster R" first="Robert G." last="Webster">Robert G. Webster</name>
<name sortKey="Wu, Gang" sort="Wu, Gang" uniqKey="Wu G" first="Gang" last="Wu">Gang Wu</name>
<name sortKey="Zhang, Jinghui" sort="Zhang, Jinghui" uniqKey="Zhang J" first="Jinghui" last="Zhang">Jinghui Zhang</name>
</country>
<country name="Arabie saoudite">
<noRegion>
<name sortKey="Webster, Robert G" sort="Webster, Robert G" uniqKey="Webster R" first="Robert G." last="Webster">Robert G. Webster</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/H2N2V1/Data/Pmc/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000351 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Pmc/Checkpoint/biblio.hfd -nk 000351 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    H2N2V1
   |flux=    Pmc
   |étape=   Checkpoint
   |type=    RBID
   |clé=     PMC:4514870
   |texte=   The Genomic Contributions of Avian H1N1 Influenza A Viruses to the Evolution of Mammalian Strains
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Pmc/Checkpoint/RBID.i   -Sk "pubmed:26208281" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Pmc/Checkpoint/biblio.hfd   \
       | NlmPubMed2Wicri -a H2N2V1 

Wicri

This area was generated with Dilib version V0.6.33.
Data generation: Tue Apr 14 19:59:40 2020. Site generation: Thu Mar 25 15:38:26 2021