The epitope regions of H1-subtype influenza A, with application to vaccine efficacy
Identifieur interne : 000394 ( Ncbi/Checkpoint ); précédent : 000393; suivant : 000395The epitope regions of H1-subtype influenza A, with application to vaccine efficacy
Auteurs : Michael W. Deem [États-Unis] ; Keyao PanSource :
- Protein Engineering, Design and Selection [ 1741-0126 ] ; 2009.
Abstract
The recent emergence of H1N1 (swine flu) illustrates the ability of the influenza virus to create antigens new to the human immune system, even within a given hemagglutinin and neuraminidase subtype. This new H1N1 strain is sufficiently distinct, for example, from the A/Brisbane/59/2007 (H1N1)-like virus strain of influenza in the 2008/09 Northern hemisphere vaccine that protection is not expected to be substantial. The human immune system responds primarily to the five epitope regions of the hemagglutinin protein. By determining the fraction of amino acids that differ between a vaccine strain and a viral challenge strain in the dominant epitope regions, a measure of antigenic distance that correlates with epidemiological studies of H3 influenza A vaccine efficacy in humans with
Url:
DOI: 10.1093/protein/gzp027
PubMed: 19578121
PubMed Central: 3307478
Affiliations:
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,<institution>Rice University</institution>
,<addr-line>6100 Main Street, MS 142, Houston, TX 77005-1892</addr-line>
,<country>USA</country>
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<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Pan, Keyao" sort="Pan, Keyao" uniqKey="Pan K" first="Keyao" last="Pan">Keyao Pan</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The epitope regions of H1-subtype influenza A, with application to vaccine efficacy</title>
<author><name sortKey="Deem, Michael W" sort="Deem, Michael W" uniqKey="Deem M" first="Michael W." last="Deem">Michael W. Deem</name>
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<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Pan, Keyao" sort="Pan, Keyao" uniqKey="Pan K" first="Keyao" last="Pan">Keyao Pan</name>
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<series><title level="j">Protein Engineering, Design and Selection</title>
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<front><div type="abstract" xml:lang="en"><p>The recent emergence of H1N1 (swine flu) illustrates the ability of the influenza virus to create antigens new to the human immune system, even within a given hemagglutinin and neuraminidase subtype. This new H1N1 strain is sufficiently distinct, for example, from the A/Brisbane/59/2007 (H1N1)-like virus strain of influenza in the 2008/09 Northern hemisphere vaccine that protection is not expected to be substantial. The human immune system responds primarily to the five epitope regions of the hemagglutinin protein. By determining the fraction of amino acids that differ between a vaccine strain and a viral challenge strain in the dominant epitope regions, a measure of antigenic distance that correlates with epidemiological studies of H3 influenza A vaccine efficacy in humans with <italic>R</italic>
<sup>2</sup>
= 0.81 is derived. This measure of antigenic distance is called <italic>p</italic>
<sub>epitope</sub>
. The relation between vaccine efficacy and <italic>p</italic>
<sub>epitope</sub>
is given by <italic>E</italic>
= 0.47 – 2.47 × <italic>p</italic>
<sub>epitope</sub>
. We here identify the epitope regions of H1 hemagglutinin, so that vaccine efficacy may be reliably estimated for H1N1 influenza A.</p>
</div>
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