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An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus.

Identifieur interne : 000017 ( Hal/Curation ); précédent : 000016; suivant : 000018

An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus.

Auteurs : Cyrille Gavazzi [France] ; Catherine Isel [France] ; Emilie Fournier [France] ; Vincent Moules [France] ; Annie Cavalier [France] ; Daniel Thomas [France] ; Bruno Lina [France] ; Roland Marquet [France]

Source :

RBID : Hal:inserm-00870461

Abstract

The genome of influenza A viruses (IAV) is split into eight viral RNAs (vRNAs) that are encapsidated as viral ribonucleoproteins. The existence of a segment-specific packaging mechanism is well established, but the molecular basis of this mechanism remains to be deciphered. Selective packaging could be mediated by direct interaction between the vRNA packaging regions, but such interactions have never been demonstrated in virions. Recently, we showed that the eight vRNAs of a human H3N2 IAV form a single interaction network in vitro that involves regions of the vRNAs known to contain packaging signals in the case of H1N1 IAV strains. Here, we show that the eight vRNAs of an avian H5N2 IAV also form a single network of interactions in vitro, but, interestingly, the interactions and the regions of the vRNAs they involve differ from those described for the human H3N2 virus. We identified the vRNA sequences involved in five of these interactions at the nucleotide level, and in two cases, we validated the existence of the interaction using compensatory mutations in the interacting sequences. Electron tomography also revealed significant differences in the interactions taking place between viral ribonucleoproteins in H5N2 and H3N2 virions, despite their canonical '7 + 1' arrangement.


Url:
DOI: 10.1093/nar/gks1181

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Hal:inserm-00870461

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<name sortKey="Thomas, Daniel" sort="Thomas, Daniel" uniqKey="Thomas D" first="Daniel" last="Thomas">Daniel Thomas</name>
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<name sortKey="Lina, Bruno" sort="Lina, Bruno" uniqKey="Lina B" first="Bruno" last="Lina">Bruno Lina</name>
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<orgName type="institution" wicri:auto="newGroup">Université de Lyon</orgName>
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<author>
<name sortKey="Marquet, Roland" sort="Marquet, Roland" uniqKey="Marquet R" first="Roland" last="Marquet">Roland Marquet</name>
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<country>France</country>
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<orgName type="institution" wicri:auto="newGroup">Université de Strasbourg</orgName>
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</analytic>
<idno type="DOI">10.1093/nar/gks1181</idno>
<series>
<title level="j">Nucleic Acids Research</title>
<idno type="ISSN">0305-1048</idno>
<imprint>
<date type="datePub">2013-01</date>
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<div type="abstract" xml:lang="en">
<p>The genome of influenza A viruses (IAV) is split into eight viral RNAs (vRNAs) that are encapsidated as viral ribonucleoproteins. The existence of a segment-specific packaging mechanism is well established, but the molecular basis of this mechanism remains to be deciphered. Selective packaging could be mediated by direct interaction between the vRNA packaging regions, but such interactions have never been demonstrated in virions. Recently, we showed that the eight vRNAs of a human H3N2 IAV form a single interaction network in vitro that involves regions of the vRNAs known to contain packaging signals in the case of H1N1 IAV strains. Here, we show that the eight vRNAs of an avian H5N2 IAV also form a single network of interactions in vitro, but, interestingly, the interactions and the regions of the vRNAs they involve differ from those described for the human H3N2 virus. We identified the vRNA sequences involved in five of these interactions at the nucleotide level, and in two cases, we validated the existence of the interaction using compensatory mutations in the interacting sequences. Electron tomography also revealed significant differences in the interactions taking place between viral ribonucleoproteins in H5N2 and H3N2 virions, despite their canonical '7 + 1' arrangement.</p>
</div>
</front>
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<title xml:lang="en">An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus.</title>
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<persName>
<forename type="first">Cyrille</forename>
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<forename type="first">Catherine</forename>
<surname>Isel</surname>
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<forename type="first">Vincent</forename>
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<forename type="first">Annie</forename>
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<forename type="first">Daniel</forename>
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<title xml:lang="en">An in vitro network of intermolecular interactions between viral RNA segments of an avian H5N2 influenza A virus: comparison with a human H3N2 virus.</title>
<author role="aut">
<persName>
<forename type="first">Cyrille</forename>
<surname>Gavazzi</surname>
</persName>
<idno type="halauthorid">896738</idno>
<affiliation ref="#struct-18579"></affiliation>
</author>
<author role="aut">
<persName>
<forename type="first">Catherine</forename>
<surname>Isel</surname>
</persName>
<idno type="halauthorid">168175</idno>
<affiliation ref="#struct-18579"></affiliation>
</author>
<author role="aut">
<persName>
<forename type="first">Emilie</forename>
<surname>Fournier</surname>
</persName>
<idno type="halauthorid">199246</idno>
<affiliation ref="#struct-18579"></affiliation>
</author>
<author role="aut">
<persName>
<forename type="first">Vincent</forename>
<surname>Moules</surname>
</persName>
<idno type="halauthorid">412452</idno>
<affiliation ref="#struct-508819"></affiliation>
</author>
<author role="aut">
<persName>
<forename type="first">Annie</forename>
<surname>Cavalier</surname>
</persName>
<idno type="halauthorid">127924</idno>
<affiliation ref="#struct-187162"></affiliation>
</author>
<author role="aut">
<persName>
<forename type="first">Daniel</forename>
<surname>Thomas</surname>
</persName>
<idno type="halauthorid">127927</idno>
<affiliation ref="#struct-187162"></affiliation>
</author>
<author role="aut">
<persName>
<forename type="first">Bruno</forename>
<surname>Lina</surname>
</persName>
<idno type="halauthorid">400981</idno>
<affiliation ref="#struct-508819"></affiliation>
</author>
<author role="crp">
<persName>
<forename type="first">Roland</forename>
<surname>Marquet</surname>
</persName>
<email type="md5">26f248676211016883d196c7780122ba</email>
<email type="domain">ibmc-cnrs.unistra.fr</email>
<idno type="halauthorid">462721</idno>
<affiliation ref="#struct-18579"></affiliation>
</author>
</analytic>
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<idno type="halJournalId" status="VALID">1850</idno>
<idno type="issn">0305-1048</idno>
<idno type="eissn">1362-4962</idno>
<title level="j">Nucleic Acids Research</title>
<imprint>
<publisher>Oxford University Press</publisher>
<biblScope unit="volume">41</biblScope>
<biblScope unit="issue">2</biblScope>
<biblScope unit="pp">1241-54</biblScope>
<date type="datePub">2013-01</date>
<date type="dateEpub">2012-12-05</date>
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<idno type="doi">10.1093/nar/gks1181</idno>
<idno type="pubmed">23221636</idno>
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<language ident="en">English</language>
</langUsage>
<textClass>
<classCode scheme="mesh">Dogs</classCode>
<classCode scheme="mesh">Animals</classCode>
<classCode scheme="mesh">Electron Microscope Tomography</classCode>
<classCode scheme="mesh">Influenza A Virus, H3N2 Subtype</classCode>
<classCode scheme="mesh">Influenza A Virus, H5N2 Subtype</classCode>
<classCode scheme="mesh">Madin Darby Canine Kidney Cells</classCode>
<classCode scheme="mesh">RNA, Viral</classCode>
<classCode scheme="mesh">Ribonucleoproteins</classCode>
<classCode scheme="mesh">Virion</classCode>
<classCode scheme="mesh">Virus Assembly</classCode>
<classCode scheme="halDomain" n="sdv.gen">Life Sciences [q-bio]/Genetics</classCode>
<classCode scheme="halTypology" n="ART">Journal articles</classCode>
</textClass>
<abstract xml:lang="en">
<p>The genome of influenza A viruses (IAV) is split into eight viral RNAs (vRNAs) that are encapsidated as viral ribonucleoproteins. The existence of a segment-specific packaging mechanism is well established, but the molecular basis of this mechanism remains to be deciphered. Selective packaging could be mediated by direct interaction between the vRNA packaging regions, but such interactions have never been demonstrated in virions. Recently, we showed that the eight vRNAs of a human H3N2 IAV form a single interaction network in vitro that involves regions of the vRNAs known to contain packaging signals in the case of H1N1 IAV strains. Here, we show that the eight vRNAs of an avian H5N2 IAV also form a single network of interactions in vitro, but, interestingly, the interactions and the regions of the vRNAs they involve differ from those described for the human H3N2 virus. We identified the vRNA sequences involved in five of these interactions at the nucleotide level, and in two cases, we validated the existence of the interaction using compensatory mutations in the interacting sequences. Electron tomography also revealed significant differences in the interactions taking place between viral ribonucleoproteins in H5N2 and H3N2 virions, despite their canonical '7 + 1' arrangement.</p>
</abstract>
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