Genetic analysis identifies potential transmission of low pathogenic avian influenza viruses between poultry farms.
Identifieur interne : 000012 ( Main/Corpus ); précédent : 000011; suivant : 000013Genetic analysis identifies potential transmission of low pathogenic avian influenza viruses between poultry farms.
Auteurs : Saskia A. Bergervoet ; Rene Heutink ; Ruth Bouwstra ; Ron A M. Fouchier ; Nancy BeerensSource :
- Transboundary and emerging diseases [ 1865-1682 ] ; 2019.
English descriptors
- KwdEn :
- Animal Husbandry (MeSH), Animals (MeSH), Chickens (MeSH), Ducks (MeSH), Epidemiological Monitoring (MeSH), Farms (MeSH), Female (MeSH), Incidence (MeSH), Influenza A virus (physiology), Influenza in Birds (epidemiology), Influenza in Birds (transmission), Influenza in Birds (virology), Netherlands (epidemiology), Poultry Diseases (epidemiology), Poultry Diseases (transmission), Poultry Diseases (virology), Turkeys (MeSH).
- MESH :
- geographic , epidemiology : Netherlands.
- epidemiology : Influenza in Birds, Poultry Diseases.
- physiology : Influenza A virus.
- transmission : Influenza in Birds, Poultry Diseases.
- virology : Influenza in Birds, Poultry Diseases.
- Animal Husbandry, Animals, Chickens, Ducks, Epidemiological Monitoring, Farms, Female, Incidence, Turkeys.
Abstract
Poultry can become infected with low pathogenic avian influenza (LPAI) viruses via (in)direct contact with infected wild birds or by transmission of the virus between farms. This study combines routinely collected surveillance data with genetic analysis to assess the contribution of between-farm transmission to the overall incidence of LPAI virus infections in poultry. Over a 10-year surveillance period, we identified 35 potential cases of between-farm transmission in the Netherlands, of which 10 formed geographical clusters. A total of 21 LPAI viruses were isolated from nine potential between-farm transmission cases, which were further studied by genetic and epidemiological analysis. Whole genome sequence analysis identified close genetic links between infected farms in seven cases. The presence of identical deletions in the neuraminidase stalk region and minority variants provided additional indications of between-farm transmission. Spatiotemporal analysis demonstrated that genetically closely related viruses were detected within a median time interval of 8 days, and the median distance between the infected farms was significantly shorter compared to farms infected with genetically distinct viruses (6.3 versus 69.0 km; p < 0.05). The results further suggest that between-farm transmission was not restricted to holdings of the same poultry type and not related to the housing system. Although separate introductions from the wild bird reservoir cannot be excluded, our study indicates that between-farm transmission occurred in seven of nine virologically analysed cases. Based on these findings, it is likely that between-farm transmission contributes considerably to the incidence of LPAI virus infections in poultry.
DOI: 10.1111/tbed.13199
PubMed: 30964232
PubMed Central: PMC6850361
Links to Exploration step
pubmed:30964232Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic analysis identifies potential transmission of low pathogenic avian influenza viruses between poultry farms.</title><author><name sortKey="Bergervoet, Saskia A" sort="Bergervoet, Saskia A" uniqKey="Bergervoet S" first="Saskia A" last="Bergervoet">Saskia A. Bergervoet</name><affiliation><nlm:affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Viroscience, Erasmus MC, Rotterdam, The Netherlandss.</nlm:affiliation></affiliation></author><author><name sortKey="Heutink, Rene" sort="Heutink, Rene" uniqKey="Heutink R" first="Rene" last="Heutink">Rene Heutink</name><affiliation><nlm:affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Bouwstra, Ruth" sort="Bouwstra, Ruth" uniqKey="Bouwstra R" first="Ruth" last="Bouwstra">Ruth Bouwstra</name><affiliation><nlm:affiliation>GD Animal Health Service, Deventer, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Fouchier, Ron A M" sort="Fouchier, Ron A M" uniqKey="Fouchier R" first="Ron A M" last="Fouchier">Ron A M. Fouchier</name><affiliation><nlm:affiliation>Department of Viroscience, Erasmus MC, Rotterdam, The Netherlandss.</nlm:affiliation></affiliation></author><author><name sortKey="Beerens, Nancy" sort="Beerens, Nancy" uniqKey="Beerens N" first="Nancy" last="Beerens">Nancy Beerens</name><affiliation><nlm:affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:30964232</idno><idno type="pmid">30964232</idno><idno type="doi">10.1111/tbed.13199</idno><idno type="pmc">PMC6850361</idno><idno type="wicri:Area/Main/Corpus">000012</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000012</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic analysis identifies potential transmission of low pathogenic avian influenza viruses between poultry farms.</title><author><name sortKey="Bergervoet, Saskia A" sort="Bergervoet, Saskia A" uniqKey="Bergervoet S" first="Saskia A" last="Bergervoet">Saskia A. Bergervoet</name><affiliation><nlm:affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</nlm:affiliation></affiliation><affiliation><nlm:affiliation>Department of Viroscience, Erasmus MC, Rotterdam, The Netherlandss.</nlm:affiliation></affiliation></author><author><name sortKey="Heutink, Rene" sort="Heutink, Rene" uniqKey="Heutink R" first="Rene" last="Heutink">Rene Heutink</name><affiliation><nlm:affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Bouwstra, Ruth" sort="Bouwstra, Ruth" uniqKey="Bouwstra R" first="Ruth" last="Bouwstra">Ruth Bouwstra</name><affiliation><nlm:affiliation>GD Animal Health Service, Deventer, The Netherlands.</nlm:affiliation></affiliation></author><author><name sortKey="Fouchier, Ron A M" sort="Fouchier, Ron A M" uniqKey="Fouchier R" first="Ron A M" last="Fouchier">Ron A M. Fouchier</name><affiliation><nlm:affiliation>Department of Viroscience, Erasmus MC, Rotterdam, The Netherlandss.</nlm:affiliation></affiliation></author><author><name sortKey="Beerens, Nancy" sort="Beerens, Nancy" uniqKey="Beerens N" first="Nancy" last="Beerens">Nancy Beerens</name><affiliation><nlm:affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Transboundary and emerging diseases</title><idno type="eISSN">1865-1682</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animal Husbandry (MeSH)</term><term>Animals (MeSH)</term><term>Chickens (MeSH)</term><term>Ducks (MeSH)</term><term>Epidemiological Monitoring (MeSH)</term><term>Farms (MeSH)</term><term>Female (MeSH)</term><term>Incidence (MeSH)</term><term>Influenza A virus (physiology)</term><term>Influenza in Birds (epidemiology)</term><term>Influenza in Birds (transmission)</term><term>Influenza in Birds (virology)</term><term>Netherlands (epidemiology)</term><term>Poultry Diseases (epidemiology)</term><term>Poultry Diseases (transmission)</term><term>Poultry Diseases (virology)</term><term>Turkeys (MeSH)</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Netherlands</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="transmission" xml:lang="en"><term>Influenza in Birds</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza in Birds</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animal Husbandry</term><term>Animals</term><term>Chickens</term><term>Ducks</term><term>Epidemiological Monitoring</term><term>Farms</term><term>Female</term><term>Incidence</term><term>Turkeys</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Poultry can become infected with low pathogenic avian influenza (LPAI) viruses via (in)direct contact with infected wild birds or by transmission of the virus between farms. This study combines routinely collected surveillance data with genetic analysis to assess the contribution of between-farm transmission to the overall incidence of LPAI virus infections in poultry. Over a 10-year surveillance period, we identified 35 potential cases of between-farm transmission in the Netherlands, of which 10 formed geographical clusters. A total of 21 LPAI viruses were isolated from nine potential between-farm transmission cases, which were further studied by genetic and epidemiological analysis. Whole genome sequence analysis identified close genetic links between infected farms in seven cases. The presence of identical deletions in the neuraminidase stalk region and minority variants provided additional indications of between-farm transmission. Spatiotemporal analysis demonstrated that genetically closely related viruses were detected within a median time interval of 8 days, and the median distance between the infected farms was significantly shorter compared to farms infected with genetically distinct viruses (6.3 versus 69.0 km; p < 0.05). The results further suggest that between-farm transmission was not restricted to holdings of the same poultry type and not related to the housing system. Although separate introductions from the wild bird reservoir cannot be excluded, our study indicates that between-farm transmission occurred in seven of nine virologically analysed cases. Based on these findings, it is likely that between-farm transmission contributes considerably to the incidence of LPAI virus infections in poultry.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30964232</PMID><DateCompleted><Year>2019</Year><Month>10</Month><Day>24</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>16</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1865-1682</ISSN><JournalIssue CitedMedium="Internet"><Volume>66</Volume><Issue>4</Issue><PubDate><Year>2019</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Transboundary and emerging diseases</Title><ISOAbbreviation>Transbound Emerg Dis</ISOAbbreviation></Journal><ArticleTitle>Genetic analysis identifies potential transmission of low pathogenic avian influenza viruses between poultry farms.</ArticleTitle><Pagination><MedlinePgn>1653-1664</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/tbed.13199</ELocationID><Abstract><AbstractText>Poultry can become infected with low pathogenic avian influenza (LPAI) viruses via (in)direct contact with infected wild birds or by transmission of the virus between farms. This study combines routinely collected surveillance data with genetic analysis to assess the contribution of between-farm transmission to the overall incidence of LPAI virus infections in poultry. Over a 10-year surveillance period, we identified 35 potential cases of between-farm transmission in the Netherlands, of which 10 formed geographical clusters. A total of 21 LPAI viruses were isolated from nine potential between-farm transmission cases, which were further studied by genetic and epidemiological analysis. Whole genome sequence analysis identified close genetic links between infected farms in seven cases. The presence of identical deletions in the neuraminidase stalk region and minority variants provided additional indications of between-farm transmission. Spatiotemporal analysis demonstrated that genetically closely related viruses were detected within a median time interval of 8 days, and the median distance between the infected farms was significantly shorter compared to farms infected with genetically distinct viruses (6.3 versus 69.0 km; p < 0.05). The results further suggest that between-farm transmission was not restricted to holdings of the same poultry type and not related to the housing system. Although separate introductions from the wild bird reservoir cannot be excluded, our study indicates that between-farm transmission occurred in seven of nine virologically analysed cases. Based on these findings, it is likely that between-farm transmission contributes considerably to the incidence of LPAI virus infections in poultry.</AbstractText><CopyrightInformation>© 2019 The Authors. Transboundary and Emerging Diseases Published by Blackwell Verlag GmbH.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bergervoet</LastName><ForeName>Saskia A</ForeName><Initials>SA</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-1857-2715</Identifier><AffiliationInfo><Affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Department of Viroscience, Erasmus MC, Rotterdam, The Netherlandss.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Heutink</LastName><ForeName>Rene</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bouwstra</LastName><ForeName>Ruth</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>GD Animal Health Service, Deventer, The Netherlands.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fouchier</LastName><ForeName>Ron A M</ForeName><Initials>RAM</Initials><AffiliationInfo><Affiliation>Department of Viroscience, Erasmus MC, Rotterdam, The Netherlandss.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beerens</LastName><ForeName>Nancy</ForeName><Initials>N</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-6756-4431</Identifier><AffiliationInfo><Affiliation>Department of Virology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>WOT-01-003-066</GrantID><Agency>Dutch Ministry of Agriculture, Nature and Food Quality</Agency><Country></Country></Grant><Grant><GrantID>KB-21-006-01</GrantID><Agency>Dutch Ministry of Agriculture, Nature and Food Quality</Agency><Country></Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>04</Month><Day>25</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Transbound Emerg Dis</MedlineTA><NlmUniqueID>101319538</NlmUniqueID><ISSNLinking>1865-1674</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000822" MajorTopicYN="N">Animal Husbandry</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002645" MajorTopicYN="Y">Chickens</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004372" MajorTopicYN="Y">Ducks</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D062665" MajorTopicYN="N">Epidemiological Monitoring</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000072480" MajorTopicYN="N">Farms</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015994" MajorTopicYN="N">Incidence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000635" MajorTopicYN="N">transmission</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009426" MajorTopicYN="N" Type="Geographic">Netherlands</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011201" MajorTopicYN="N">Poultry Diseases</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000635" MajorTopicYN="N">transmission</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014422" MajorTopicYN="Y">Turkeys</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">avian influenza virus</Keyword><Keyword MajorTopicYN="N">between-farm transmission</Keyword><Keyword MajorTopicYN="N">genetic analysis</Keyword><Keyword MajorTopicYN="N">low pathogenic avian influenza</Keyword><Keyword MajorTopicYN="N">poultry</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>02</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2019</Year><Month>03</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>04</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>4</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>10</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>4</Month><Day>10</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30964232</ArticleId><ArticleId IdType="doi">10.1111/tbed.13199</ArticleId><ArticleId IdType="pmc">PMC6850361</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Avian Pathol. 2000 Dec;29(6):537-43</Citation><ArticleIdList><ArticleId IdType="pubmed">19184849</ArticleId></ArticleIdList></Reference><Reference><Citation>J Hosp Infect. 2017 Feb;95(2):194-199</Citation><ArticleIdList><ArticleId IdType="pubmed">28139390</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2010 Mar 25;5(3):e9888</Citation><ArticleIdList><ArticleId IdType="pubmed">20360859</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2010 Nov;84(22):11831-40</Citation><ArticleIdList><ArticleId IdType="pubmed">20826691</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2005 Mar;79(5):2814-22</Citation><ArticleIdList><ArticleId IdType="pubmed">15709000</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2010 Mar;54(1 Suppl):586-90</Citation><ArticleIdList><ArticleId IdType="pubmed">20521699</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2017 Mar 9;12(3):e0173470</Citation><ArticleIdList><ArticleId IdType="pubmed">28278281</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Sep;23(9):1510-1516</Citation><ArticleIdList><ArticleId IdType="pubmed">28820139</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1356-61</Citation><ArticleIdList><ArticleId IdType="pubmed">14745020</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2005 Mar;49(1):81-5</Citation><ArticleIdList><ArticleId IdType="pubmed">15839417</ArticleId></ArticleIdList></Reference><Reference><Citation>Influenza Other Respir Viruses. 2010 Mar;4(2):91-9</Citation><ArticleIdList><ArticleId IdType="pubmed">20167049</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2011 Jun;7(6):e1002094</Citation><ArticleIdList><ArticleId IdType="pubmed">21731491</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2006 Apr 21;312(5772):384-8</Citation><ArticleIdList><ArticleId IdType="pubmed">16627734</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Res. 2017 Sep 15;48(1):49</Citation><ArticleIdList><ArticleId IdType="pubmed">28915920</ArticleId></ArticleIdList></Reference><Reference><Citation>Epidemiol Infect. 2003 Oct;131(2):1003-13</Citation><ArticleIdList><ArticleId IdType="pubmed">14596543</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2003;47(3 Suppl):812-6</Citation><ArticleIdList><ArticleId IdType="pubmed">14575069</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Pathog. 2014 Nov 20;10(11):e1004508</Citation><ArticleIdList><ArticleId IdType="pubmed">25411973</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2004 Aug;33(4):393-404</Citation><ArticleIdList><ArticleId IdType="pubmed">15370036</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2003;47(3 Suppl):1099-103</Citation><ArticleIdList><ArticleId IdType="pubmed">14575120</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2009 Mar;53(1):55-62</Citation><ArticleIdList><ArticleId IdType="pubmed">19432004</ArticleId></ArticleIdList></Reference><Reference><Citation>Cell. 1987 Aug 28;50(5):665-6</Citation><ArticleIdList><ArticleId IdType="pubmed">3304656</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2007 Mar;51(1 Suppl):373-7</Citation><ArticleIdList><ArticleId IdType="pubmed">17494587</ArticleId></ArticleIdList></Reference><Reference><Citation>Bull Soc Pathol Exot. 2008 Jun;101(3):238-42</Citation><ArticleIdList><ArticleId IdType="pubmed">18681218</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2018 Jun 4;8(1):8533</Citation><ArticleIdList><ArticleId IdType="pubmed">29867092</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Microbiol. 2009 Apr 14;136(1-2):20-6</Citation><ArticleIdList><ArticleId IdType="pubmed">19081209</ArticleId></ArticleIdList></Reference><Reference><Citation>J Infect Dis. 2004 Dec 15;190(12):2088-95</Citation><ArticleIdList><ArticleId IdType="pubmed">15551206</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2017 Dec;23(12):1974-1981</Citation><ArticleIdList><ArticleId IdType="pubmed">29148396</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Genomics. 2015 Feb 14;16:79</Citation><ArticleIdList><ArticleId IdType="pubmed">25758772</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2011;6(10):e26935</Citation><ArticleIdList><ArticleId IdType="pubmed">22046417</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2010 Jan;84(2):940-52</Citation><ArticleIdList><ArticleId IdType="pubmed">19889765</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS Comput Biol. 2007 Apr 20;3(4):e71</Citation><ArticleIdList><ArticleId IdType="pubmed">17447838</ArticleId></ArticleIdList></Reference><Reference><Citation>Influenza Other Respir Viruses. 2013 Mar;7(2):132-8</Citation><ArticleIdList><ArticleId IdType="pubmed">22487257</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2016 Aug 04;6:30858</Citation><ArticleIdList><ArticleId IdType="pubmed">27489095</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Q. 2017 Dec;37(1):182-194</Citation><ArticleIdList><ArticleId IdType="pubmed">28460593</ArticleId></ArticleIdList></Reference><Reference><Citation>Euro Surveill. 2017 Mar 30;22(13):</Citation><ArticleIdList><ArticleId IdType="pubmed">28382917</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2009 Sep;47(9):2985-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19587298</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2011 Feb 23;6(2):e14722</Citation><ArticleIdList><ArticleId IdType="pubmed">21373190</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2008 Aug;46(8):2561-7</Citation><ArticleIdList><ArticleId IdType="pubmed">18562585</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2016 Jun;60(2):467-72</Citation><ArticleIdList><ArticleId IdType="pubmed">27309289</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 May 06;10(5):e0125401</Citation><ArticleIdList><ArticleId IdType="pubmed">25946115</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2003;47(3 Suppl):823-7</Citation><ArticleIdList><ArticleId IdType="pubmed">14575071</ArticleId></ArticleIdList></Reference><Reference><Citation>Prev Vet Med. 2005 Jun 10;69(1-2):1-11</Citation><ArticleIdList><ArticleId IdType="pubmed">15899292</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2016 Jun 24;90(14):6401-6411</Citation><ArticleIdList><ArticleId IdType="pubmed">27147741</ArticleId></ArticleIdList></Reference><Reference><Citation>J Am Vet Med Assoc. 2005 Mar 1;226(5):767-72</Citation><ArticleIdList><ArticleId IdType="pubmed">15776951</ArticleId></ArticleIdList></Reference><Reference><Citation>Epidemiol Infect. 2010 Jun;138(6):813-24</Citation><ArticleIdList><ArticleId IdType="pubmed">19845996</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(2):e31114</Citation><ArticleIdList><ArticleId IdType="pubmed">22348042</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2010 Mar;54(1 Suppl):522-6</Citation><ArticleIdList><ArticleId IdType="pubmed">20521688</ArticleId></ArticleIdList></Reference><Reference><Citation>J Infect Dis. 2013 Mar 1;207(5):730-5</Citation><ArticleIdList><ArticleId IdType="pubmed">23230058</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Jan 22;9(1):e86788</Citation><ArticleIdList><ArticleId IdType="pubmed">24466241</ArticleId></ArticleIdList></Reference><Reference><Citation>Microbiol Rev. 1992 Mar;56(1):152-79</Citation><ArticleIdList><ArticleId IdType="pubmed">1579108</ArticleId></ArticleIdList></Reference><Reference><Citation>Rev Sci Tech. 2010 Dec;29(3):435-49</Citation><ArticleIdList><ArticleId IdType="pubmed">21309445</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2012 Jan;86(1):584-8</Citation><ArticleIdList><ArticleId IdType="pubmed">22013034</ArticleId></ArticleIdList></Reference><Reference><Citation>Euro Surveill. 2018 Jun;23(26):</Citation><ArticleIdList><ArticleId IdType="pubmed">29970219</ArticleId></ArticleIdList></Reference><Reference><Citation>Influenza Other Respir Viruses. 2009 Jul;3(4):151-64</Citation><ArticleIdList><ArticleId IdType="pubmed">19627372</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2018 Apr 17;24(4):null</Citation><ArticleIdList><ArticleId IdType="pubmed">29381134</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Res Commun. 1988;12(2-3):125-41</Citation><ArticleIdList><ArticleId IdType="pubmed">3055662</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Microbiol. 2011 Aug 26;152(1-2):187-90</Citation><ArticleIdList><ArticleId IdType="pubmed">21571449</ArticleId></ArticleIdList></Reference><Reference><Citation>Prev Vet Med. 2012 Dec 1;107(3-4):253-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22819637</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 1999 Jan-Mar;43(1):142-9</Citation><ArticleIdList><ArticleId IdType="pubmed">10216772</ArticleId></ArticleIdList></Reference><Reference><Citation>Prev Vet Med. 2014 Nov 1;117(1):251-9</Citation><ArticleIdList><ArticleId IdType="pubmed">25217408</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2013 Jun;57(2):266-72</Citation><ArticleIdList><ArticleId IdType="pubmed">24689184</ArticleId></ArticleIdList></Reference><Reference><Citation>Euro Surveill. 2015 Jul 02;20(26):null</Citation><ArticleIdList><ArticleId IdType="pubmed">26159311</ArticleId></ArticleIdList></Reference><Reference><Citation>Influenza Other Respir Viruses. 2012 Nov;6(6):442-8</Citation><ArticleIdList><ArticleId IdType="pubmed">22340982</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2000 Nov;38(11):4096-101</Citation><ArticleIdList><ArticleId IdType="pubmed">11060074</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2006 Oct;87(Pt 10):2803-15</Citation><ArticleIdList><ArticleId IdType="pubmed">16963738</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/GrippePaysBasV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000012 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 000012 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= GrippePaysBasV1
|flux= Main
|étape= Corpus
|type= RBID
|clé= pubmed:30964232
|texte= Genetic analysis identifies potential transmission of low pathogenic avian influenza viruses between poultry farms.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i -Sk "pubmed:30964232" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a GrippePaysBasV1
| This area was generated with Dilib version V0.6.35. |  |