Co-circulation of two genetically distinct sub-groups of A/H3N2 influenza strains during the 2006-2007 epidemic season in Corsica Island, France.
Identifieur interne : 000489 ( Main/Corpus ); précédent : 000488; suivant : 000490Co-circulation of two genetically distinct sub-groups of A/H3N2 influenza strains during the 2006-2007 epidemic season in Corsica Island, France.
Auteurs : Alessandra Falchi ; Laurent Varesi ; Christophe Arena ; Nicolas Leveque ; Fanny Renois ; Thierry Blanchon ; Jean Pierre Amoros ; Laurent AndreolettiSource :
- Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology [ 1873-5967 ] ; 2009.
English descriptors
- KwdEn :
- Adolescent (MeSH), Adult (MeSH), Aged (MeSH), Aged, 80 and over (MeSH), Amino Acid Substitution (MeSH), Child (MeSH), Child, Preschool (MeSH), Female (MeSH), France (epidemiology), Genotype (MeSH), Hemagglutinins, Viral (genetics), Humans (MeSH), Influenza A Virus, H1N1 Subtype (genetics), Influenza A Virus, H1N1 Subtype (isolation & purification), Influenza A Virus, H3N2 Subtype (classification), Influenza A Virus, H3N2 Subtype (genetics), Influenza A Virus, H3N2 Subtype (isolation & purification), Influenza, Human (epidemiology), Influenza, Human (virology), Male (MeSH), Middle Aged (MeSH), Molecular Sequence Data (MeSH), Mutation, Missense (MeSH), Sequence Analysis, DNA (MeSH), Young Adult (MeSH).
- MESH :
- chemical , genetics : Hemagglutinins, Viral.
- geographic , epidemiology : France.
- classification : Influenza A Virus, H3N2 Subtype.
- epidemiology : Influenza, Human.
- genetics : Influenza A Virus, H1N1 Subtype, Influenza A Virus, H3N2 Subtype.
- isolation & purification : Influenza A Virus, H1N1 Subtype, Influenza A Virus, H3N2 Subtype.
- virology : Influenza, Human.
- Adolescent, Adult, Aged, Aged, 80 and over, Amino Acid Substitution, Child, Child, Preschool, Female, Genotype, Humans, Male, Middle Aged, Molecular Sequence Data, Mutation, Missense, Sequence Analysis, DNA, Young Adult.
Abstract
BACKGROUND
Influenza virus is one of the major viral respiratory pathogens infecting human beings.
OBJECTIVES
To determine the influenza A virus variants responsible for the 2006-2007 epidemic season in Corsica Island, France.
STUDY DESIGN
Of 134 nasal samples of adult patients tested by culture and RT-PCR assays, 85 influenza A strains were identified; 81 (95%) were sub-typed as A/H3N2 and 4 (5%) were sub-typed as A/H1N1.
RESULTS
All of the HA sequences of the A/H3N2 viruses circulating in Corsica Island appeared to be closely related to the A/Wisconsin/67/2005 vaccine strain and segregated into two sub-groups that were genetically distinct from other viruses circulating in other countries during 2006/2007. One of these sub-groups was distinguished by the substitution H156Q whereas the second demonstrated at least one of the 3 other additional mutations (R142G, L157S and K173E) common to the HA1 sequence of A/Nepal/921/2006 reference strain. Among the 14 strains of this second sub-group, 10 viral strains had been isolated from vaccinated adult patients.
CONCLUSION
These findings suggest that a prospective analysis of the HA sequences of influenza isolates may allow an early detection of newly evolved variants with potential epidemiological inference.
DOI: 10.1016/j.jcv.2009.05.004
PubMed: 19502107
Links to Exploration step
pubmed:19502107Le document en format XML
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F" first="Fanny" last="Renois">Fanny Renois</name></author><author><name sortKey="Blanchon, Thierry" sort="Blanchon, Thierry" uniqKey="Blanchon T" first="Thierry" last="Blanchon">Thierry Blanchon</name></author><author><name sortKey="Amoros, Jean Pierre" sort="Amoros, Jean Pierre" uniqKey="Amoros J" first="Jean Pierre" last="Amoros">Jean Pierre Amoros</name></author><author><name sortKey="Andreoletti, Laurent" sort="Andreoletti, Laurent" uniqKey="Andreoletti L" first="Laurent" last="Andreoletti">Laurent Andreoletti</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19502107</idno><idno type="pmid">19502107</idno><idno type="doi">10.1016/j.jcv.2009.05.004</idno><idno type="wicri:Area/Main/Corpus">000489</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000489</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Co-circulation of two genetically distinct sub-groups of A/H3N2 influenza strains during the 2006-2007 epidemic season in Corsica Island, France.</title><author><name sortKey="Falchi, Alessandra" sort="Falchi, Alessandra" uniqKey="Falchi A" first="Alessandra" last="Falchi">Alessandra Falchi</name><affiliation><nlm:affiliation>INSERM, U707, Paris, France. falchi@u707.jussieu.fr</nlm:affiliation></affiliation></author><author><name sortKey="Varesi, Laurent" sort="Varesi, Laurent" uniqKey="Varesi L" first="Laurent" last="Varesi">Laurent Varesi</name></author><author><name sortKey="Arena, Christophe" sort="Arena, Christophe" uniqKey="Arena C" first="Christophe" last="Arena">Christophe Arena</name></author><author><name sortKey="Leveque, Nicolas" sort="Leveque, Nicolas" uniqKey="Leveque N" first="Nicolas" last="Leveque">Nicolas Leveque</name></author><author><name sortKey="Renois, Fanny" sort="Renois, Fanny" uniqKey="Renois F" first="Fanny" last="Renois">Fanny Renois</name></author><author><name sortKey="Blanchon, Thierry" sort="Blanchon, Thierry" uniqKey="Blanchon T" first="Thierry" last="Blanchon">Thierry Blanchon</name></author><author><name sortKey="Amoros, Jean Pierre" sort="Amoros, Jean Pierre" uniqKey="Amoros J" first="Jean Pierre" last="Amoros">Jean Pierre Amoros</name></author><author><name sortKey="Andreoletti, Laurent" sort="Andreoletti, Laurent" uniqKey="Andreoletti L" first="Laurent" last="Andreoletti">Laurent Andreoletti</name></author></analytic><series><title level="j">Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</title><idno type="eISSN">1873-5967</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent (MeSH)</term><term>Adult (MeSH)</term><term>Aged (MeSH)</term><term>Aged, 80 and over (MeSH)</term><term>Amino Acid Substitution (MeSH)</term><term>Child (MeSH)</term><term>Child, Preschool (MeSH)</term><term>Female (MeSH)</term><term>France (epidemiology)</term><term>Genotype (MeSH)</term><term>Hemagglutinins, Viral (genetics)</term><term>Humans (MeSH)</term><term>Influenza A Virus, H1N1 Subtype (genetics)</term><term>Influenza A Virus, H1N1 Subtype (isolation & purification)</term><term>Influenza A Virus, H3N2 Subtype (classification)</term><term>Influenza A Virus, H3N2 Subtype (genetics)</term><term>Influenza A Virus, H3N2 Subtype (isolation & purification)</term><term>Influenza, Human (epidemiology)</term><term>Influenza, Human (virology)</term><term>Male (MeSH)</term><term>Middle Aged (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Mutation, Missense (MeSH)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Young Adult (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Hemagglutinins, Viral</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>France</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A Virus, H3N2 Subtype</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza, Human</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H1N1 Subtype</term><term>Influenza A Virus, H3N2 Subtype</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A Virus, H1N1 Subtype</term><term>Influenza A Virus, H3N2 Subtype</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adolescent</term><term>Adult</term><term>Aged</term><term>Aged, 80 and over</term><term>Amino Acid Substitution</term><term>Child</term><term>Child, Preschool</term><term>Female</term><term>Genotype</term><term>Humans</term><term>Male</term><term>Middle Aged</term><term>Molecular Sequence Data</term><term>Mutation, Missense</term><term>Sequence Analysis, DNA</term><term>Young Adult</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>Influenza virus is one of the major viral respiratory pathogens infecting human beings.</p></div><div type="abstract" xml:lang="en"><p><b>OBJECTIVES</b></p><p>To determine the influenza A virus variants responsible for the 2006-2007 epidemic season in Corsica Island, France.</p></div><div type="abstract" xml:lang="en"><p><b>STUDY DESIGN</b></p><p>Of 134 nasal samples of adult patients tested by culture and RT-PCR assays, 85 influenza A strains were identified; 81 (95%) were sub-typed as A/H3N2 and 4 (5%) were sub-typed as A/H1N1.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>All of the HA sequences of the A/H3N2 viruses circulating in Corsica Island appeared to be closely related to the A/Wisconsin/67/2005 vaccine strain and segregated into two sub-groups that were genetically distinct from other viruses circulating in other countries during 2006/2007. One of these sub-groups was distinguished by the substitution H156Q whereas the second demonstrated at least one of the 3 other additional mutations (R142G, L157S and K173E) common to the HA1 sequence of A/Nepal/921/2006 reference strain. Among the 14 strains of this second sub-group, 10 viral strains had been isolated from vaccinated adult patients.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSION</b></p><p>These findings suggest that a prospective analysis of the HA sequences of influenza isolates may allow an early detection of newly evolved variants with potential epidemiological inference.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19502107</PMID><DateCompleted><Year>2009</Year><Month>08</Month><Day>11</Day></DateCompleted><DateRevised><Year>2009</Year><Month>06</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1873-5967</ISSN><JournalIssue CitedMedium="Internet"><Volume>45</Volume><Issue>3</Issue><PubDate><Year>2009</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</Title><ISOAbbreviation>J. Clin. Virol.</ISOAbbreviation></Journal><ArticleTitle>Co-circulation of two genetically distinct sub-groups of A/H3N2 influenza strains during the 2006-2007 epidemic season in Corsica Island, France.</ArticleTitle><Pagination><MedlinePgn>265-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.jcv.2009.05.004</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Influenza virus is one of the major viral respiratory pathogens infecting human beings.</AbstractText><AbstractText Label="OBJECTIVES" NlmCategory="OBJECTIVE">To determine the influenza A virus variants responsible for the 2006-2007 epidemic season in Corsica Island, France.</AbstractText><AbstractText Label="STUDY DESIGN" NlmCategory="METHODS">Of 134 nasal samples of adult patients tested by culture and RT-PCR assays, 85 influenza A strains were identified; 81 (95%) were sub-typed as A/H3N2 and 4 (5%) were sub-typed as A/H1N1.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">All of the HA sequences of the A/H3N2 viruses circulating in Corsica Island appeared to be closely related to the A/Wisconsin/67/2005 vaccine strain and segregated into two sub-groups that were genetically distinct from other viruses circulating in other countries during 2006/2007. One of these sub-groups was distinguished by the substitution H156Q whereas the second demonstrated at least one of the 3 other additional mutations (R142G, L157S and K173E) common to the HA1 sequence of A/Nepal/921/2006 reference strain. Among the 14 strains of this second sub-group, 10 viral strains had been isolated from vaccinated adult patients.</AbstractText><AbstractText Label="CONCLUSION" NlmCategory="CONCLUSIONS">These findings suggest that a prospective analysis of the HA sequences of influenza isolates may allow an early detection of newly evolved variants with potential epidemiological inference.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Falchi</LastName><ForeName>Alessandra</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>INSERM, U707, Paris, France. falchi@u707.jussieu.fr</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Varesi</LastName><ForeName>Laurent</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Arena</LastName><ForeName>Christophe</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Leveque</LastName><ForeName>Nicolas</ForeName><Initials>N</Initials></Author><Author 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