Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.
Identifieur interne : 000380 ( Main/Exploration ); précédent : 000379; suivant : 000381Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.
Auteurs : Jeffrey S. Hall [États-Unis] ; Joshua L. Teslaa ; Sean W. Nashold ; Rebecca A. Halpin ; Timothy Stockwell ; David E. Wentworth ; Vivien Dugan ; Hon S. IpSource :
- Virology journal [ 1743-422X ] ; 2013.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Animaux (MeSH), Canada (MeSH), Dérive génétique (MeSH), Grippe chez les oiseaux (virologie), Génotype (MeSH), Instabilité du génome (MeSH), Oiseaux (virologie), Phylogenèse (MeSH), Virus de la grippe A (classification), Virus de la grippe A (génétique), Virus de la grippe A (isolement et purification), Virus recombinants (classification), Virus recombinants (génétique), Virus recombinants (isolement et purification), Évolution moléculaire (MeSH).
- MESH :
- génétique : ARN viral, Virus de la grippe A, Virus recombinants.
- isolement et purification : Virus de la grippe A, Virus recombinants.
- virologie : Grippe chez les oiseaux, Oiseaux.
- Analyse de regroupements, Analyse de séquence d'ADN, Animaux, Canada, Dérive génétique, Génotype, Instabilité du génome, Phylogenèse, Évolution moléculaire.
- Wicri :
- geographic : Canada.
English descriptors
- KwdEn :
- Animals (MeSH), Birds (virology), Canada (MeSH), Cluster Analysis (MeSH), Evolution, Molecular (MeSH), Genetic Drift (MeSH), Genomic Instability (MeSH), Genotype (MeSH), Influenza A virus (classification), Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza in Birds (virology), Phylogeny (MeSH), RNA, Viral (genetics), Reassortant Viruses (classification), Reassortant Viruses (genetics), Reassortant Viruses (isolation & purification), Sequence Analysis, DNA (MeSH).
- MESH :
- chemical , genetics : RNA, Viral.
- geographic : Canada.
- classification : Influenza A virus, Reassortant Viruses.
- genetics : Influenza A virus, Reassortant Viruses.
- isolation & purification : Influenza A virus, Reassortant Viruses.
- virology : Birds, Influenza in Birds.
- Animals, Cluster Analysis, Evolution, Molecular, Genetic Drift, Genomic Instability, Genotype, Phylogeny, Sequence Analysis, DNA.
Abstract
BACKGROUND
The role of gulls in the ecology of avian influenza (AI) is different than that of waterfowl. Different constellations of subtypes circulate within the two groups of birds and AI viruses isolated from North American gulls frequently possess reassortant genomes with genetic elements from both North America and Eurasian lineages. A 2008 isolate from a Newfoundland Great Black-backed Gull contained a mix of North American waterfowl, North American gull and Eurasian lineage genes.
METHODS
We isolated, sequenced and phylogenetically compared avian influenza viruses from 2009 Canadian wild birds.
RESULTS
We analyzed six 2009 virus isolates from Canada and found the same phylogenetic lineage had persisted over a larger geographic area, with an expanded host range that included dabbling and diving ducks as well as gulls. All of the 2009 virus isolates contained an internal protein coding set of genes of the same Eurasian lineage genes except PB1 that was from a North American lineage, and these genes continued to evolve by genetic drift. We show evidence that the 2008 Great Black-backed Gull virus was derived from this lineage with a reassortment of a North American PA gene into the more stable core set of internal protein coding genes that has circulated in avian populations for at least 2 years. From this core, the surface glycoprotein genes have switched several times creating H13N6, H13N2, and H16N3 subtypes. These gene segments were from North American lineages except for the H16 and N3 vRNAs.
CONCLUSIONS
This process appears similar to genetic shifts seen with swine influenza where a stable "triple reassortant internal gene" core has circulated in swine populations with genetic shifts occurring with hemaggluttinin and neuraminidase proteins getting periodically switched. Thus gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza. These findings illustrate the need for continued surveillance in gull and waterfowl populations, both on the Pacific and especially Atlantic coasts of North America, to document virus intercontinental movement and the role of gull species in the evolution and epidemiology of AI.
DOI: 10.1186/1743-422X-10-179
PubMed: 23742717
PubMed Central: PMC3706275
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Nashold</name></author><author><name sortKey="Halpin, Rebecca A" sort="Halpin, Rebecca A" uniqKey="Halpin R" first="Rebecca A" last="Halpin">Rebecca A. Halpin</name></author><author><name sortKey="Stockwell, Timothy" sort="Stockwell, Timothy" uniqKey="Stockwell T" first="Timothy" last="Stockwell">Timothy Stockwell</name></author><author><name sortKey="Wentworth, David E" sort="Wentworth, David E" uniqKey="Wentworth D" first="David E" last="Wentworth">David E. Wentworth</name></author><author><name sortKey="Dugan, Vivien" sort="Dugan, Vivien" uniqKey="Dugan V" first="Vivien" last="Dugan">Vivien Dugan</name></author><author><name sortKey="Ip, Hon S" sort="Ip, Hon S" uniqKey="Ip H" first="Hon S" last="Ip">Hon S. Ip</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2013">2013</date><idno type="RBID">pubmed:23742717</idno><idno type="pmid">23742717</idno><idno type="doi">10.1186/1743-422X-10-179</idno><idno type="pmc">PMC3706275</idno><idno type="wicri:Area/Main/Corpus">000361</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000361</idno><idno type="wicri:Area/Main/Curation">000361</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000361</idno><idno type="wicri:Area/Main/Exploration">000361</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.</title><author><name sortKey="Hall, Jeffrey S" sort="Hall, Jeffrey S" uniqKey="Hall J" first="Jeffrey S" last="Hall">Jeffrey S. Hall</name><affiliation wicri:level="2"><nlm:affiliation>USGS National Wildlife Health Center, 6007 Schroeder Rd, Madison, WI, USA. jshall@usgs.gov</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>USGS National Wildlife Health Center, 6007 Schroeder Rd, Madison, WI</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation></author><author><name sortKey="Teslaa, Joshua L" sort="Teslaa, Joshua L" uniqKey="Teslaa J" first="Joshua L" last="Teslaa">Joshua L. Teslaa</name></author><author><name sortKey="Nashold, Sean W" sort="Nashold, Sean W" uniqKey="Nashold S" first="Sean W" last="Nashold">Sean W. Nashold</name></author><author><name sortKey="Halpin, Rebecca A" sort="Halpin, Rebecca A" uniqKey="Halpin R" first="Rebecca A" last="Halpin">Rebecca A. Halpin</name></author><author><name sortKey="Stockwell, Timothy" sort="Stockwell, Timothy" uniqKey="Stockwell T" first="Timothy" last="Stockwell">Timothy Stockwell</name></author><author><name sortKey="Wentworth, David E" sort="Wentworth, David E" uniqKey="Wentworth D" first="David E" last="Wentworth">David E. Wentworth</name></author><author><name sortKey="Dugan, Vivien" sort="Dugan, Vivien" uniqKey="Dugan V" first="Vivien" last="Dugan">Vivien Dugan</name></author><author><name sortKey="Ip, Hon S" sort="Ip, Hon S" uniqKey="Ip H" first="Hon S" last="Ip">Hon S. Ip</name></author></analytic><series><title level="j">Virology journal</title><idno type="eISSN">1743-422X</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals (MeSH)</term><term>Birds (virology)</term><term>Canada (MeSH)</term><term>Cluster Analysis (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Genetic Drift (MeSH)</term><term>Genomic Instability (MeSH)</term><term>Genotype (MeSH)</term><term>Influenza A virus (classification)</term><term>Influenza A virus (genetics)</term><term>Influenza A virus (isolation & purification)</term><term>Influenza in Birds (virology)</term><term>Phylogeny (MeSH)</term><term>RNA, Viral (genetics)</term><term>Reassortant Viruses (classification)</term><term>Reassortant Viruses (genetics)</term><term>Reassortant Viruses (isolation & purification)</term><term>Sequence Analysis, DNA (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (génétique)</term><term>Analyse de regroupements (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Animaux (MeSH)</term><term>Canada (MeSH)</term><term>Dérive génétique (MeSH)</term><term>Grippe chez les oiseaux (virologie)</term><term>Génotype (MeSH)</term><term>Instabilité du génome (MeSH)</term><term>Oiseaux (virologie)</term><term>Phylogenèse (MeSH)</term><term>Virus de la grippe A (classification)</term><term>Virus de la grippe A (génétique)</term><term>Virus de la grippe A (isolement et purification)</term><term>Virus recombinants (classification)</term><term>Virus recombinants (génétique)</term><term>Virus recombinants (isolement et purification)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Canada</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A virus</term><term>Reassortant Viruses</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term><term>Reassortant Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>ARN viral</term><term>Virus de la grippe A</term><term>Virus recombinants</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A virus</term><term>Reassortant Viruses</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Virus de la grippe A</term><term>Virus recombinants</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe chez les oiseaux</term><term>Oiseaux</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Birds</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Cluster Analysis</term><term>Evolution, Molecular</term><term>Genetic Drift</term><term>Genomic Instability</term><term>Genotype</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de regroupements</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Canada</term><term>Dérive génétique</term><term>Génotype</term><term>Instabilité du génome</term><term>Phylogenèse</term><term>Évolution moléculaire</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Canada</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><b>BACKGROUND</b></p><p>The role of gulls in the ecology of avian influenza (AI) is different than that of waterfowl. Different constellations of subtypes circulate within the two groups of birds and AI viruses isolated from North American gulls frequently possess reassortant genomes with genetic elements from both North America and Eurasian lineages. A 2008 isolate from a Newfoundland Great Black-backed Gull contained a mix of North American waterfowl, North American gull and Eurasian lineage genes.</p></div><div type="abstract" xml:lang="en"><p><b>METHODS</b></p><p>We isolated, sequenced and phylogenetically compared avian influenza viruses from 2009 Canadian wild birds.</p></div><div type="abstract" xml:lang="en"><p><b>RESULTS</b></p><p>We analyzed six 2009 virus isolates from Canada and found the same phylogenetic lineage had persisted over a larger geographic area, with an expanded host range that included dabbling and diving ducks as well as gulls. All of the 2009 virus isolates contained an internal protein coding set of genes of the same Eurasian lineage genes except PB1 that was from a North American lineage, and these genes continued to evolve by genetic drift. We show evidence that the 2008 Great Black-backed Gull virus was derived from this lineage with a reassortment of a North American PA gene into the more stable core set of internal protein coding genes that has circulated in avian populations for at least 2 years. From this core, the surface glycoprotein genes have switched several times creating H13N6, H13N2, and H16N3 subtypes. These gene segments were from North American lineages except for the H16 and N3 vRNAs.</p></div><div type="abstract" xml:lang="en"><p><b>CONCLUSIONS</b></p><p>This process appears similar to genetic shifts seen with swine influenza where a stable "triple reassortant internal gene" core has circulated in swine populations with genetic shifts occurring with hemaggluttinin and neuraminidase proteins getting periodically switched. Thus gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza. These findings illustrate the need for continued surveillance in gull and waterfowl populations, both on the Pacific and especially Atlantic coasts of North America, to document virus intercontinental movement and the role of gull species in the evolution and epidemiology of AI.</p></div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23742717</PMID><DateCompleted><Year>2014</Year><Month>01</Month><Day>22</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1743-422X</ISSN><JournalIssue CitedMedium="Internet"><Volume>10</Volume><PubDate><Year>2013</Year><Month>Jun</Month><Day>06</Day></PubDate></JournalIssue><Title>Virology journal</Title><ISOAbbreviation>Virol. J.</ISOAbbreviation></Journal><ArticleTitle>Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.</ArticleTitle><Pagination><MedlinePgn>179</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/1743-422X-10-179</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">The role of gulls in the ecology of avian influenza (AI) is different than that of waterfowl. Different constellations of subtypes circulate within the two groups of birds and AI viruses isolated from North American gulls frequently possess reassortant genomes with genetic elements from both North America and Eurasian lineages. A 2008 isolate from a Newfoundland Great Black-backed Gull contained a mix of North American waterfowl, North American gull and Eurasian lineage genes.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">We isolated, sequenced and phylogenetically compared avian influenza viruses from 2009 Canadian wild birds.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">We analyzed six 2009 virus isolates from Canada and found the same phylogenetic lineage had persisted over a larger geographic area, with an expanded host range that included dabbling and diving ducks as well as gulls. All of the 2009 virus isolates contained an internal protein coding set of genes of the same Eurasian lineage genes except PB1 that was from a North American lineage, and these genes continued to evolve by genetic drift. We show evidence that the 2008 Great Black-backed Gull virus was derived from this lineage with a reassortment of a North American PA gene into the more stable core set of internal protein coding genes that has circulated in avian populations for at least 2 years. From this core, the surface glycoprotein genes have switched several times creating H13N6, H13N2, and H16N3 subtypes. These gene segments were from North American lineages except for the H16 and N3 vRNAs.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">This process appears similar to genetic shifts seen with swine influenza where a stable "triple reassortant internal gene" core has circulated in swine populations with genetic shifts occurring with hemaggluttinin and neuraminidase proteins getting periodically switched. Thus gulls may serve as genetic mixing vessels for different lineages of avian influenza, similar to the role of swine with regards to human influenza. These findings illustrate the need for continued surveillance in gull and waterfowl populations, both on the Pacific and especially Atlantic coasts of North America, to document virus intercontinental movement and the role of gull species in the evolution and epidemiology of AI.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hall</LastName><ForeName>Jeffrey S</ForeName><Initials>JS</Initials><AffiliationInfo><Affiliation>USGS National Wildlife Health Center, 6007 Schroeder Rd, Madison, WI, USA. jshall@usgs.gov</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Teslaa</LastName><ForeName>Joshua L</ForeName><Initials>JL</Initials></Author><Author ValidYN="Y"><LastName>Nashold</LastName><ForeName>Sean W</ForeName><Initials>SW</Initials></Author><Author ValidYN="Y"><LastName>Halpin</LastName><ForeName>Rebecca A</ForeName><Initials>RA</Initials></Author><Author ValidYN="Y"><LastName>Stockwell</LastName><ForeName>Timothy</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Wentworth</LastName><ForeName>David E</ForeName><Initials>DE</Initials></Author><Author ValidYN="Y"><LastName>Dugan</LastName><ForeName>Vivien</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Ip</LastName><ForeName>Hon S</ForeName><Initials>HS</Initials></Author></AuthorList><Language>eng</Language><GrantList CompleteYN="Y"><Grant><GrantID>266200400041C</GrantID><Agency>PHS HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>266200700007C</GrantID><Agency>PHS HHS</Agency><Country>United States</Country></Grant><Grant><GrantID>272200900007C</GrantID><Agency>PHS HHS</Agency><Country>United States</Country></Grant></GrantList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D052061">Research Support, N.I.H., Extramural</PublicationType><PublicationType 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MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="Y">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040961" MajorTopicYN="N">Genetic Drift</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D042822" MajorTopicYN="N">Genomic Instability</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012367" MajorTopicYN="N">RNA, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016865" MajorTopicYN="N">Reassortant Viruses</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>02</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>05</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>6</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>6</Month><Day>8</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>1</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23742717</ArticleId><ArticleId IdType="pii">1743-422X-10-179</ArticleId><ArticleId IdType="doi">10.1186/1743-422X-10-179</ArticleId><ArticleId IdType="pmc">PMC3706275</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>J Virol. 2000 Sep;74(18):8243-51</Citation><ArticleIdList><ArticleId IdType="pubmed">10954521</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2011 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Halpin</name><name sortKey="Ip, Hon S" sort="Ip, Hon S" uniqKey="Ip H" first="Hon S" last="Ip">Hon S. Ip</name><name sortKey="Nashold, Sean W" sort="Nashold, Sean W" uniqKey="Nashold S" first="Sean W" last="Nashold">Sean W. Nashold</name><name sortKey="Stockwell, Timothy" sort="Stockwell, Timothy" uniqKey="Stockwell T" first="Timothy" last="Stockwell">Timothy Stockwell</name><name sortKey="Teslaa, Joshua L" sort="Teslaa, Joshua L" uniqKey="Teslaa J" first="Joshua L" last="Teslaa">Joshua L. Teslaa</name><name sortKey="Wentworth, David E" sort="Wentworth, David E" uniqKey="Wentworth D" first="David E" last="Wentworth">David E. Wentworth</name></noCountry><country name="États-Unis"><region name="Wisconsin"><name sortKey="Hall, Jeffrey S" sort="Hall, Jeffrey S" uniqKey="Hall J" first="Jeffrey S" last="Hall">Jeffrey S. Hall</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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|texte= Evolution of a reassortant North American gull influenza virus lineage: drift, shift and stability.
}}
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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:23742717" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a GrippeCanadaV4
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