Use of an innovative web-based laboratory surveillance platform to analyze mixed infections between human metapneumovirus (hMPV) and other respiratory viruses circulating in Alberta (AB), Canada (2009-2012).
Identifieur interne : 000414 ( Main/Exploration ); précédent : 000413; suivant : 000415Use of an innovative web-based laboratory surveillance platform to analyze mixed infections between human metapneumovirus (hMPV) and other respiratory viruses circulating in Alberta (AB), Canada (2009-2012).
Auteurs : Sumana Fathima [Canada] ; Bonita E. Lee ; Jennifer May-Hadford ; Shamir Mukhi ; Steven J. DrewsSource :
- Viruses [ 1999-4915 ] ; 2012.
Descripteurs français
- KwdFr :
- Alberta (épidémiologie), Co-infection (MeSH), Enfant d'âge préscolaire (MeSH), Humains (MeSH), Infections de l'appareil respiratoire (virologie), Infections de l'appareil respiratoire (épidémiologie), Infections à Paramyxoviridae (virologie), Infections à Paramyxoviridae (épidémiologie), Internet (MeSH), Metapneumovirus (génétique), Nourrisson (MeSH), Nouveau-né (MeSH), Saisons (MeSH), Surveillance de la santé publique (méthodes), Virus (génétique).
- MESH :
- génétique : Metapneumovirus, Virus.
- méthodes : Surveillance de la santé publique.
- virologie : Infections de l'appareil respiratoire, Infections à Paramyxoviridae.
- épidémiologie : Alberta, Infections de l'appareil respiratoire, Infections à Paramyxoviridae.
- Co-infection, Enfant d'âge préscolaire, Humains, Internet, Nourrisson, Nouveau-né, Saisons.
English descriptors
- KwdEn :
- Alberta (epidemiology), Child, Preschool (MeSH), Coinfection (MeSH), Humans (MeSH), Infant (MeSH), Infant, Newborn (MeSH), Internet (MeSH), Metapneumovirus (genetics), Paramyxoviridae Infections (epidemiology), Paramyxoviridae Infections (virology), Public Health Surveillance (methods), Respiratory Tract Infections (epidemiology), Respiratory Tract Infections (virology), Seasons (MeSH), Viruses (genetics).
- MESH :
- geographic , epidemiology : Alberta.
- epidemiology : Paramyxoviridae Infections, Respiratory Tract Infections.
- genetics : Metapneumovirus, Viruses.
- methods : Public Health Surveillance.
- virology : Paramyxoviridae Infections, Respiratory Tract Infections.
- Child, Preschool, Coinfection, Humans, Infant, Infant, Newborn, Internet, Seasons.
Abstract
We investigated the proportions of mono vs. mixed infections for human metapneumovirus (hMPV) as compared to adenovirus (ADV), four types of coronavirus (CRV), parainfluenza virus (PIV), RSV, and enterovirus/rhinovirus (ERV) in Alberta, Canada. Using the Data Integration for Alberta Laboratories (DIAL) platform, 26,226 respiratory specimens at ProvLab between 1 July 2009 and 30 June 2012 were selected and included in the study. Using the Respiratory Virus Panel these specimens tested positive for one or more respiratory virus and negative for influenza A and B. From our subset hMPV was the fourth most common virus (n=2,561) with 373 (15%) identified as mixed infection using DIAL. Mixed infection with hMPV was most commonly found in infants less than 6 months old and ERV was most commonly found in mixed infection with hMPV (230/373, 56%) across all age groups. The proportion of mixed-infection vs. mono-infection was highest for ADV (46%), followed by CRV 229E (32%), CRV HKU1 (31%), CRV NL63 (28%), CRV OC43 (23%), PIV (20%), RSV (17%), hMPV (15%) and ERV (13%). hMPV was significantly more likely to be identified in mono infection as compared with ADV, CRV, PIV, and RSV with the exception of ERV [p < 0.05].
DOI: 10.3390/v4112754
PubMed: 23202503
PubMed Central: PMC3509671
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Lee</name></author><author><name sortKey="May Hadford, Jennifer" sort="May Hadford, Jennifer" uniqKey="May Hadford J" first="Jennifer" last="May-Hadford">Jennifer May-Hadford</name></author><author><name sortKey="Mukhi, Shamir" sort="Mukhi, Shamir" uniqKey="Mukhi S" first="Shamir" last="Mukhi">Shamir Mukhi</name></author><author><name sortKey="Drews, Steven J" sort="Drews, Steven J" uniqKey="Drews S" first="Steven J" last="Drews">Steven J. 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Lee</name></author><author><name sortKey="May Hadford, Jennifer" sort="May Hadford, Jennifer" uniqKey="May Hadford J" first="Jennifer" last="May-Hadford">Jennifer May-Hadford</name></author><author><name sortKey="Mukhi, Shamir" sort="Mukhi, Shamir" uniqKey="Mukhi S" first="Shamir" last="Mukhi">Shamir Mukhi</name></author><author><name sortKey="Drews, Steven J" sort="Drews, Steven J" uniqKey="Drews S" first="Steven J" last="Drews">Steven J. Drews</name></author></analytic><series><title level="j">Viruses</title><idno type="eISSN">1999-4915</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Alberta (epidemiology)</term><term>Child, Preschool (MeSH)</term><term>Coinfection (MeSH)</term><term>Humans (MeSH)</term><term>Infant (MeSH)</term><term>Infant, Newborn (MeSH)</term><term>Internet (MeSH)</term><term>Metapneumovirus (genetics)</term><term>Paramyxoviridae Infections (epidemiology)</term><term>Paramyxoviridae Infections (virology)</term><term>Public Health Surveillance (methods)</term><term>Respiratory Tract Infections (epidemiology)</term><term>Respiratory Tract Infections (virology)</term><term>Seasons (MeSH)</term><term>Viruses (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Alberta (épidémiologie)</term><term>Co-infection (MeSH)</term><term>Enfant d'âge préscolaire (MeSH)</term><term>Humains (MeSH)</term><term>Infections de l'appareil respiratoire (virologie)</term><term>Infections de l'appareil respiratoire (épidémiologie)</term><term>Infections à Paramyxoviridae (virologie)</term><term>Infections à Paramyxoviridae (épidémiologie)</term><term>Internet (MeSH)</term><term>Metapneumovirus (génétique)</term><term>Nourrisson (MeSH)</term><term>Nouveau-né (MeSH)</term><term>Saisons (MeSH)</term><term>Surveillance de la santé publique (méthodes)</term><term>Virus (génétique)</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>Alberta</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Paramyxoviridae Infections</term><term>Respiratory Tract Infections</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Metapneumovirus</term><term>Viruses</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Metapneumovirus</term><term>Virus</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Public Health Surveillance</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Surveillance de la santé publique</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Infections de l'appareil respiratoire</term><term>Infections à Paramyxoviridae</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Paramyxoviridae Infections</term><term>Respiratory Tract Infections</term></keywords><keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Alberta</term><term>Infections de l'appareil respiratoire</term><term>Infections à Paramyxoviridae</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Child, Preschool</term><term>Coinfection</term><term>Humans</term><term>Infant</term><term>Infant, Newborn</term><term>Internet</term><term>Seasons</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Co-infection</term><term>Enfant d'âge préscolaire</term><term>Humains</term><term>Internet</term><term>Nourrisson</term><term>Nouveau-né</term><term>Saisons</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We investigated the proportions of mono vs. mixed infections for human metapneumovirus (hMPV) as compared to adenovirus (ADV), four types of coronavirus (CRV), parainfluenza virus (PIV), RSV, and enterovirus/rhinovirus (ERV) in Alberta, Canada. Using the Data Integration for Alberta Laboratories (DIAL) platform, 26,226 respiratory specimens at ProvLab between 1 July 2009 and 30 June 2012 were selected and included in the study. Using the Respiratory Virus Panel these specimens tested positive for one or more respiratory virus and negative for influenza A and B. From our subset hMPV was the fourth most common virus (n=2,561) with 373 (15%) identified as mixed infection using DIAL. Mixed infection with hMPV was most commonly found in infants less than 6 months old and ERV was most commonly found in mixed infection with hMPV (230/373, 56%) across all age groups. The proportion of mixed-infection vs. mono-infection was highest for ADV (46%), followed by CRV 229E (32%), CRV HKU1 (31%), CRV NL63 (28%), CRV OC43 (23%), PIV (20%), RSV (17%), hMPV (15%) and ERV (13%). hMPV was significantly more likely to be identified in mono infection as compared with ADV, CRV, PIV, and RSV with the exception of ERV [p < 0.05].</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23202503</PMID><DateCompleted><Year>2013</Year><Month>05</Month><Day>16</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1999-4915</ISSN><JournalIssue CitedMedium="Internet"><Volume>4</Volume><Issue>11</Issue><PubDate><Year>2012</Year><Month>Nov</Month><Day>05</Day></PubDate></JournalIssue><Title>Viruses</Title><ISOAbbreviation>Viruses</ISOAbbreviation></Journal><ArticleTitle>Use of an innovative web-based laboratory surveillance platform to analyze mixed infections between human metapneumovirus (hMPV) and other respiratory viruses circulating in Alberta (AB), Canada (2009-2012).</ArticleTitle><Pagination><MedlinePgn>2754-65</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3390/v4112754</ELocationID><Abstract><AbstractText>We investigated the proportions of mono vs. mixed infections for human metapneumovirus (hMPV) as compared to adenovirus (ADV), four types of coronavirus (CRV), parainfluenza virus (PIV), RSV, and enterovirus/rhinovirus (ERV) in Alberta, Canada. Using the Data Integration for Alberta Laboratories (DIAL) platform, 26,226 respiratory specimens at ProvLab between 1 July 2009 and 30 June 2012 were selected and included in the study. Using the Respiratory Virus Panel these specimens tested positive for one or more respiratory virus and negative for influenza A and B. From our subset hMPV was the fourth most common virus (n=2,561) with 373 (15%) identified as mixed infection using DIAL. Mixed infection with hMPV was most commonly found in infants less than 6 months old and ERV was most commonly found in mixed infection with hMPV (230/373, 56%) across all age groups. The proportion of mixed-infection vs. mono-infection was highest for ADV (46%), followed by CRV 229E (32%), CRV HKU1 (31%), CRV NL63 (28%), CRV OC43 (23%), PIV (20%), RSV (17%), hMPV (15%) and ERV (13%). hMPV was significantly more likely to be identified in mono infection as compared with ADV, CRV, PIV, and RSV with the exception of ERV [p < 0.05].</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fathima</LastName><ForeName>Sumana</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Provincial Laboratory for Public Health (ProvLab), 3030 Hospital Dr. NW, Calgary, Alberta, T2N 4W4, Canada. sumana.fathima@albertahealthservices.ca</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Bonita E</ForeName><Initials>BE</Initials></Author><Author ValidYN="Y"><LastName>May-Hadford</LastName><ForeName>Jennifer</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Mukhi</LastName><ForeName>Shamir</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Drews</LastName><ForeName>Steven J</ForeName><Initials>SJ</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>11</Month><Day>05</Day></ArticleDate></Article><MedlineJournalInfo><Country>Switzerland</Country><MedlineTA>Viruses</MedlineTA><NlmUniqueID>101509722</NlmUniqueID><ISSNLinking>1999-4915</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000416" MajorTopicYN="N" Type="Geographic">Alberta</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002675" MajorTopicYN="N">Child, Preschool</DescriptorName></MeshHeading><MeshHeading><DescriptorName 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sort="Drews, Steven J" uniqKey="Drews S" first="Steven J" last="Drews">Steven J. Drews</name><name sortKey="Lee, Bonita E" sort="Lee, Bonita E" uniqKey="Lee B" first="Bonita E" last="Lee">Bonita E. Lee</name><name sortKey="May Hadford, Jennifer" sort="May Hadford, Jennifer" uniqKey="May Hadford J" first="Jennifer" last="May-Hadford">Jennifer May-Hadford</name><name sortKey="Mukhi, Shamir" sort="Mukhi, Shamir" uniqKey="Mukhi S" first="Shamir" last="Mukhi">Shamir Mukhi</name></noCountry><country name="Canada"><noRegion><name sortKey="Fathima, Sumana" sort="Fathima, Sumana" uniqKey="Fathima S" first="Sumana" last="Fathima">Sumana Fathima</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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