Genomic relationships of the North American isolate of infectious salmon anemia virus (ISAV) to the Norwegian strain of ISAV.
Identifieur interne : 000B36 ( Main/Exploration ); précédent : 000B35; suivant : 000B37Genomic relationships of the North American isolate of infectious salmon anemia virus (ISAV) to the Norwegian strain of ISAV.
Auteurs : S. Blake [États-Unis] ; D. Bouchard ; W. Keleher ; M. Opitz ; B L NicholsonSource :
- Diseases of aquatic organisms [ 0177-5103 ] ; 1999.
Descripteurs français
- KwdFr :
- ADN complémentaire (composition chimique), ADN viral (composition chimique), Animaux (MeSH), Données de séquences moléculaires (MeSH), Génome viral (MeSH), Norvège (MeSH), Nouveau-Brunswick (MeSH), Orthomyxoviridae (classification), Orthomyxoviridae (génétique), Protéines virales (composition chimique), Protéines virales (génétique), Protéines virales non structurales (composition chimique), Protéines virales non structurales (génétique), RT-PCR (médecine vétérinaire), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH).
- MESH :
- composition chimique : ADN complémentaire, ADN viral, Orthomyxoviridae, Protéines virales, Protéines virales non structurales.
- génétique : Orthomyxoviridae, Protéines virales, Protéines virales non structurales.
- médecine vétérinaire : RT-PCR.
- Animaux, Données de séquences moléculaires, Génome viral, Norvège, Nouveau-Brunswick, Séquence d'acides aminés, Séquence nucléotidique.
- Wicri :
- geographic : Norvège.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Animals (MeSH), Base Sequence (MeSH), DNA, Complementary (chemistry), DNA, Viral (chemistry), Genome, Viral (MeSH), Molecular Sequence Data (MeSH), New Brunswick (MeSH), Norway (MeSH), Orthomyxoviridae (classification), Orthomyxoviridae (genetics), Reverse Transcriptase Polymerase Chain Reaction (veterinary), Viral Nonstructural Proteins (chemistry), Viral Nonstructural Proteins (genetics), Viral Proteins (chemistry), Viral Proteins (genetics).
- MESH :
- chemical , chemistry : DNA, Complementary, DNA, Viral, Viral Nonstructural Proteins, Viral Proteins.
- chemical , genetics : Viral Nonstructural Proteins, Viral Proteins.
- geographic : New Brunswick, Norway.
- classification : Orthomyxoviridae.
- genetics : Orthomyxoviridae.
- veterinary : Reverse Transcriptase Polymerase Chain Reaction.
- Amino Acid Sequence, Animals, Base Sequence, Genome, Viral, Molecular Sequence Data.
Abstract
Nucleotide and deduced amino acid sequences were determined for a 436 bp reverse transcriptase-polymerase chain reaction (RT-PCR) cDNA fragment from genome segment 8 and a 1151 bp RT-PCR cDNA fragment from genome segment 2 of the North American isolate of infectious salmon anemia virus (ISAV) and compared to the published sequences of Norwegian isolates of ISAV. The North American ISAV isolate exhibited 82.9% identity with the Sotra 92/93 ISAV isolate from Norway in the partial cDNA sequence of genome segment 2, which encodes a polymerase component protein (PB1). The North American ISAV exhibited 88 and 89% identity with 2 partial cDNA sequences of genome segment 8 (nonstructural, NS, gene) reported for the Glesvaer/2/90 isolate from Norway. The North American ISAV exhibited 96.6% similarity with the Sotra 92/93 ISAV isolate from Norway in the deduced amino acid sequences of the PB1 protein. The deduced amino acid sequence of the protein encoded in the partial cDNA fragment of open reading frame (ORF) 1 of genome segment 8 of the North American ISAV exhibited only 71.2 and 66.7% similarity with the 2 sequences of the Norwegian Glesvaer/2/90 isolate. However, the North American ISAV isolate exhibited 96.2 and 87.2% similarity with the 2 sequences of the Norwegian Glesvaer/2/90 isolate in the deduced amino acid sequences of the protein encoded in the partial cDNA of ORF 2. Comparison of these partial cDNA nucleotide and deduced amino acid sequences confirmed that the North American isolate is ISAV. However, the differences observed in these genomic sequences suggest that the North American isolate may represent a distinct genomic variant from the previously described Norwegian strains.
DOI: 10.3354/dao035139
PubMed: 10092977
Affiliations:
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Keleher</name></author><author><name sortKey="Opitz, M" sort="Opitz, M" uniqKey="Opitz M" first="M" last="Opitz">M. Opitz</name></author><author><name sortKey="Nicholson, B L" sort="Nicholson, B L" uniqKey="Nicholson B" first="B L" last="Nicholson">B L Nicholson</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1999">1999</date><idno type="RBID">pubmed:10092977</idno><idno type="pmid">10092977</idno><idno type="doi">10.3354/dao035139</idno><idno type="wicri:Area/Main/Corpus">000B39</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000B39</idno><idno type="wicri:Area/Main/Curation">000B39</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000B39</idno><idno type="wicri:Area/Main/Exploration">000B39</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genomic relationships of the North American isolate of infectious salmon anemia virus (ISAV) to the Norwegian strain of ISAV.</title><author><name sortKey="Blake, S" sort="Blake, S" uniqKey="Blake S" first="S" last="Blake">S. 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Opitz</name></author><author><name sortKey="Nicholson, B L" sort="Nicholson, B L" uniqKey="Nicholson B" first="B L" last="Nicholson">B L Nicholson</name></author></analytic><series><title level="j">Diseases of aquatic organisms</title><idno type="ISSN">0177-5103</idno><imprint><date when="1999" type="published">1999</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Animals (MeSH)</term><term>Base Sequence (MeSH)</term><term>DNA, Complementary (chemistry)</term><term>DNA, Viral (chemistry)</term><term>Genome, Viral (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>New Brunswick (MeSH)</term><term>Norway (MeSH)</term><term>Orthomyxoviridae (classification)</term><term>Orthomyxoviridae (genetics)</term><term>Reverse Transcriptase Polymerase Chain Reaction (veterinary)</term><term>Viral Nonstructural Proteins (chemistry)</term><term>Viral Nonstructural Proteins (genetics)</term><term>Viral Proteins (chemistry)</term><term>Viral Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ADN complémentaire (composition chimique)</term><term>ADN viral (composition chimique)</term><term>Animaux (MeSH)</term><term>Données de séquences moléculaires (MeSH)</term><term>Génome viral (MeSH)</term><term>Norvège (MeSH)</term><term>Nouveau-Brunswick (MeSH)</term><term>Orthomyxoviridae (classification)</term><term>Orthomyxoviridae (génétique)</term><term>Protéines virales (composition chimique)</term><term>Protéines virales (génétique)</term><term>Protéines virales non structurales (composition chimique)</term><term>Protéines virales non structurales (génétique)</term><term>RT-PCR (médecine vétérinaire)</term><term>Séquence d'acides aminés (MeSH)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>DNA, Complementary</term><term>DNA, Viral</term><term>Viral Nonstructural Proteins</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Viral Nonstructural Proteins</term><term>Viral Proteins</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>New Brunswick</term><term>Norway</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Orthomyxoviridae</term></keywords><keywords scheme="MESH" qualifier="composition chimique" xml:lang="fr"><term>ADN complémentaire</term><term>ADN viral</term><term>Orthomyxoviridae</term><term>Protéines virales</term><term>Protéines virales non structurales</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Orthomyxoviridae</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Orthomyxoviridae</term><term>Protéines virales</term><term>Protéines virales non structurales</term></keywords><keywords scheme="MESH" qualifier="médecine vétérinaire" xml:lang="fr"><term>RT-PCR</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Reverse Transcriptase Polymerase Chain Reaction</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Base Sequence</term><term>Genome, Viral</term><term>Molecular Sequence Data</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Données de séquences moléculaires</term><term>Génome viral</term><term>Norvège</term><term>Nouveau-Brunswick</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Norvège</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Nucleotide and deduced amino acid sequences were determined for a 436 bp reverse transcriptase-polymerase chain reaction (RT-PCR) cDNA fragment from genome segment 8 and a 1151 bp RT-PCR cDNA fragment from genome segment 2 of the North American isolate of infectious salmon anemia virus (ISAV) and compared to the published sequences of Norwegian isolates of ISAV. The North American ISAV isolate exhibited 82.9% identity with the Sotra 92/93 ISAV isolate from Norway in the partial cDNA sequence of genome segment 2, which encodes a polymerase component protein (PB1). The North American ISAV exhibited 88 and 89% identity with 2 partial cDNA sequences of genome segment 8 (nonstructural, NS, gene) reported for the Glesvaer/2/90 isolate from Norway. The North American ISAV exhibited 96.6% similarity with the Sotra 92/93 ISAV isolate from Norway in the deduced amino acid sequences of the PB1 protein. The deduced amino acid sequence of the protein encoded in the partial cDNA fragment of open reading frame (ORF) 1 of genome segment 8 of the North American ISAV exhibited only 71.2 and 66.7% similarity with the 2 sequences of the Norwegian Glesvaer/2/90 isolate. However, the North American ISAV isolate exhibited 96.2 and 87.2% similarity with the 2 sequences of the Norwegian Glesvaer/2/90 isolate in the deduced amino acid sequences of the protein encoded in the partial cDNA of ORF 2. Comparison of these partial cDNA nucleotide and deduced amino acid sequences confirmed that the North American isolate is ISAV. However, the differences observed in these genomic sequences suggest that the North American isolate may represent a distinct genomic variant from the previously described Norwegian strains.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">10092977</PMID><DateCompleted><Year>1999</Year><Month>06</Month><Day>07</Day></DateCompleted><DateRevised><Year>2006</Year><Month>11</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0177-5103</ISSN><JournalIssue CitedMedium="Print"><Volume>35</Volume><Issue>2</Issue><PubDate><Year>1999</Year><Month>Jan</Month><Day>29</Day></PubDate></JournalIssue><Title>Diseases of aquatic organisms</Title><ISOAbbreviation>Dis. Aquat. 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The North American ISAV exhibited 88 and 89% identity with 2 partial cDNA sequences of genome segment 8 (nonstructural, NS, gene) reported for the Glesvaer/2/90 isolate from Norway. The North American ISAV exhibited 96.6% similarity with the Sotra 92/93 ISAV isolate from Norway in the deduced amino acid sequences of the PB1 protein. The deduced amino acid sequence of the protein encoded in the partial cDNA fragment of open reading frame (ORF) 1 of genome segment 8 of the North American ISAV exhibited only 71.2 and 66.7% similarity with the 2 sequences of the Norwegian Glesvaer/2/90 isolate. However, the North American ISAV isolate exhibited 96.2 and 87.2% similarity with the 2 sequences of the Norwegian Glesvaer/2/90 isolate in the deduced amino acid sequences of the protein encoded in the partial cDNA of ORF 2. Comparison of these partial cDNA nucleotide and deduced amino acid sequences confirmed that the North American isolate is ISAV. However, the differences observed in these genomic sequences suggest that the North American isolate may represent a distinct genomic variant from the previously described Norwegian strains.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Blake</LastName><ForeName>S</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Biochemistry, Microbiology and Molecular Biology, University of Maine, Orono 04469, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bouchard</LastName><ForeName>D</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Keleher</LastName><ForeName>W</ForeName><Initials>W</Initials></Author><Author ValidYN="Y"><LastName>Opitz</LastName><ForeName>M</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Nicholson</LastName><ForeName>B L</ForeName><Initials>BL</Initials></Author></AuthorList><Language>eng</Language><DataBankList 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MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004279" MajorTopicYN="N">DNA, Viral</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009509" MajorTopicYN="N" Type="Geographic">New Brunswick</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009664" MajorTopicYN="N" Type="Geographic">Norway</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009975" MajorTopicYN="N">Orthomyxoviridae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse 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PubStatus="entrez"><Year>1999</Year><Month>3</Month><Day>27</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">10092977</ArticleId><ArticleId IdType="doi">10.3354/dao035139</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country></list><tree><noCountry><name sortKey="Bouchard, D" sort="Bouchard, D" uniqKey="Bouchard D" first="D" last="Bouchard">D. Bouchard</name><name sortKey="Keleher, W" sort="Keleher, W" uniqKey="Keleher W" first="W" last="Keleher">W. Keleher</name><name sortKey="Nicholson, B L" sort="Nicholson, B L" uniqKey="Nicholson B" first="B L" last="Nicholson">B L Nicholson</name><name sortKey="Opitz, M" sort="Opitz, M" uniqKey="Opitz M" first="M" last="Opitz">M. Opitz</name></noCountry><country name="États-Unis"><noRegion><name sortKey="Blake, S" sort="Blake, S" uniqKey="Blake S" first="S" last="Blake">S. Blake</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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