Full-genome analysis of avian influenza A(H5N1) virus from a human, North America, 2013.
Identifieur interne : 000285 ( Main/Exploration ); précédent : 000284; suivant : 000286Full-genome analysis of avian influenza A(H5N1) virus from a human, North America, 2013.
Auteurs : Kanti Pabbaraju ; Raymond Tellier ; Sallene Wong ; Yan Li ; Nathalie Bastien ; Julian W. Tang ; Steven J. Drews ; Yunho Jang ; C Todd Davis ; Kevin Fonseca ; Graham A. TipplesSource :
- Emerging infectious diseases [ 1080-6059 ] ; 2014.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Sous-type H5N1 du virus de la grippe A.
- virologie : Grippe humaine.
- Canada, Gènes viraux, Génome viral, Humains, Mutation, Phylogénie, Sous-type H5N1 du virus de la grippe A.
- Wicri :
- geographic : Canada.
English descriptors
- KwdEn :
- MESH :
- geographic : Canada.
- classification : Influenza A Virus, H5N1 Subtype.
- genetics : Influenza A Virus, H5N1 Subtype.
- virology : Influenza, Human.
- Genes, Viral, Genome, Viral, Humans, Mutation, Phylogeny.
Abstract
Full-genome analysis was conducted on the first isolate of a highly pathogenic avian influenza A(H5N1) virus from a human in North America. The virus has a hemagglutinin gene of clade 2.3.2.1c and is a reassortant with an H9N2 subtype lineage polymerase basic 2 gene. No mutations conferring resistance to adamantanes or neuraminidase inhibitors were found.
DOI: 10.3201/eid2005.140164
PubMed: 24755439
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Full-genome analysis of avian influenza A(H5N1) virus from a human, North America, 2013.</title>
<author><name sortKey="Pabbaraju, Kanti" sort="Pabbaraju, Kanti" uniqKey="Pabbaraju K" first="Kanti" last="Pabbaraju">Kanti Pabbaraju</name>
</author>
<author><name sortKey="Tellier, Raymond" sort="Tellier, Raymond" uniqKey="Tellier R" first="Raymond" last="Tellier">Raymond Tellier</name>
</author>
<author><name sortKey="Wong, Sallene" sort="Wong, Sallene" uniqKey="Wong S" first="Sallene" last="Wong">Sallene Wong</name>
</author>
<author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name>
</author>
<author><name sortKey="Bastien, Nathalie" sort="Bastien, Nathalie" uniqKey="Bastien N" first="Nathalie" last="Bastien">Nathalie Bastien</name>
</author>
<author><name sortKey="Tang, Julian W" sort="Tang, Julian W" uniqKey="Tang J" first="Julian W" last="Tang">Julian W. Tang</name>
</author>
<author><name sortKey="Drews, Steven J" sort="Drews, Steven J" uniqKey="Drews S" first="Steven J" last="Drews">Steven J. Drews</name>
</author>
<author><name sortKey="Jang, Yunho" sort="Jang, Yunho" uniqKey="Jang Y" first="Yunho" last="Jang">Yunho Jang</name>
</author>
<author><name sortKey="Davis, C Todd" sort="Davis, C Todd" uniqKey="Davis C" first="C Todd" last="Davis">C Todd Davis</name>
</author>
<author><name sortKey="Fonseca, Kevin" sort="Fonseca, Kevin" uniqKey="Fonseca K" first="Kevin" last="Fonseca">Kevin Fonseca</name>
</author>
<author><name sortKey="Tipples, Graham A" sort="Tipples, Graham A" uniqKey="Tipples G" first="Graham A" last="Tipples">Graham A. Tipples</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2014">2014</date>
<idno type="RBID">pubmed:24755439</idno>
<idno type="pmid">24755439</idno>
<idno type="doi">10.3201/eid2005.140164</idno>
<idno type="wicri:Area/Main/Corpus">000275</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000275</idno>
<idno type="wicri:Area/Main/Curation">000275</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000275</idno>
<idno type="wicri:Area/Main/Exploration">000275</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Full-genome analysis of avian influenza A(H5N1) virus from a human, North America, 2013.</title>
<author><name sortKey="Pabbaraju, Kanti" sort="Pabbaraju, Kanti" uniqKey="Pabbaraju K" first="Kanti" last="Pabbaraju">Kanti Pabbaraju</name>
</author>
<author><name sortKey="Tellier, Raymond" sort="Tellier, Raymond" uniqKey="Tellier R" first="Raymond" last="Tellier">Raymond Tellier</name>
</author>
<author><name sortKey="Wong, Sallene" sort="Wong, Sallene" uniqKey="Wong S" first="Sallene" last="Wong">Sallene Wong</name>
</author>
<author><name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name>
</author>
<author><name sortKey="Bastien, Nathalie" sort="Bastien, Nathalie" uniqKey="Bastien N" first="Nathalie" last="Bastien">Nathalie Bastien</name>
</author>
<author><name sortKey="Tang, Julian W" sort="Tang, Julian W" uniqKey="Tang J" first="Julian W" last="Tang">Julian W. Tang</name>
</author>
<author><name sortKey="Drews, Steven J" sort="Drews, Steven J" uniqKey="Drews S" first="Steven J" last="Drews">Steven J. Drews</name>
</author>
<author><name sortKey="Jang, Yunho" sort="Jang, Yunho" uniqKey="Jang Y" first="Yunho" last="Jang">Yunho Jang</name>
</author>
<author><name sortKey="Davis, C Todd" sort="Davis, C Todd" uniqKey="Davis C" first="C Todd" last="Davis">C Todd Davis</name>
</author>
<author><name sortKey="Fonseca, Kevin" sort="Fonseca, Kevin" uniqKey="Fonseca K" first="Kevin" last="Fonseca">Kevin Fonseca</name>
</author>
<author><name sortKey="Tipples, Graham A" sort="Tipples, Graham A" uniqKey="Tipples G" first="Graham A" last="Tipples">Graham A. Tipples</name>
</author>
</analytic>
<series><title level="j">Emerging infectious diseases</title>
<idno type="eISSN">1080-6059</idno>
<imprint><date when="2014" type="published">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Canada</term>
<term>Genes, Viral</term>
<term>Genome, Viral</term>
<term>Humans</term>
<term>Influenza A Virus, H5N1 Subtype (classification)</term>
<term>Influenza A Virus, H5N1 Subtype (genetics)</term>
<term>Influenza, Human (virology)</term>
<term>Mutation</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Canada</term>
<term>Grippe humaine (virologie)</term>
<term>Gènes viraux</term>
<term>Génome viral</term>
<term>Humains</term>
<term>Mutation</term>
<term>Phylogénie</term>
<term>Sous-type H5N1 du virus de la grippe A ()</term>
<term>Sous-type H5N1 du virus de la grippe A (génétique)</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>Canada</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A Virus, H5N1 Subtype</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Sous-type H5N1 du virus de la grippe A</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe humaine</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Genes, Viral</term>
<term>Genome, Viral</term>
<term>Humans</term>
<term>Mutation</term>
<term>Phylogeny</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Canada</term>
<term>Gènes viraux</term>
<term>Génome viral</term>
<term>Humains</term>
<term>Mutation</term>
<term>Phylogénie</term>
<term>Sous-type H5N1 du virus de la grippe A</term>
</keywords>
<keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Canada</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Full-genome analysis was conducted on the first isolate of a highly pathogenic avian influenza A(H5N1) virus from a human in North America. The virus has a hemagglutinin gene of clade 2.3.2.1c and is a reassortant with an H9N2 subtype lineage polymerase basic 2 gene. No mutations conferring resistance to adamantanes or neuraminidase inhibitors were found. </div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">24755439</PMID>
<DateCompleted><Year>2014</Year>
<Month>12</Month>
<Day>08</Day>
</DateCompleted>
<DateRevised><Year>2018</Year>
<Month>11</Month>
<Day>13</Day>
</DateRevised>
<Article PubModel="Print"><Journal><ISSN IssnType="Electronic">1080-6059</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>20</Volume>
<Issue>5</Issue>
<PubDate><Year>2014</Year>
<Month>May</Month>
</PubDate>
</JournalIssue>
<Title>Emerging infectious diseases</Title>
<ISOAbbreviation>Emerging Infect. Dis.</ISOAbbreviation>
</Journal>
<ArticleTitle>Full-genome analysis of avian influenza A(H5N1) virus from a human, North America, 2013.</ArticleTitle>
<Pagination><MedlinePgn>887-91</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.3201/eid2005.140164</ELocationID>
<Abstract><AbstractText>Full-genome analysis was conducted on the first isolate of a highly pathogenic avian influenza A(H5N1) virus from a human in North America. The virus has a hemagglutinin gene of clade 2.3.2.1c and is a reassortant with an H9N2 subtype lineage polymerase basic 2 gene. No mutations conferring resistance to adamantanes or neuraminidase inhibitors were found. </AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pabbaraju</LastName>
<ForeName>Kanti</ForeName>
<Initials>K</Initials>
</Author>
<Author ValidYN="Y"><LastName>Tellier</LastName>
<ForeName>Raymond</ForeName>
<Initials>R</Initials>
</Author>
<Author ValidYN="Y"><LastName>Wong</LastName>
<ForeName>Sallene</ForeName>
<Initials>S</Initials>
</Author>
<Author ValidYN="Y"><LastName>Li</LastName>
<ForeName>Yan</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Bastien</LastName>
<ForeName>Nathalie</ForeName>
<Initials>N</Initials>
</Author>
<Author ValidYN="Y"><LastName>Tang</LastName>
<ForeName>Julian W</ForeName>
<Initials>JW</Initials>
</Author>
<Author ValidYN="Y"><LastName>Drews</LastName>
<ForeName>Steven J</ForeName>
<Initials>SJ</Initials>
</Author>
<Author ValidYN="Y"><LastName>Jang</LastName>
<ForeName>Yunho</ForeName>
<Initials>Y</Initials>
</Author>
<Author ValidYN="Y"><LastName>Davis</LastName>
<ForeName>C Todd</ForeName>
<Initials>CT</Initials>
</Author>
<Author ValidYN="Y"><LastName>Fonseca</LastName>
<ForeName>Kevin</ForeName>
<Initials>K</Initials>
</Author>
<Author ValidYN="Y"><LastName>Tipples</LastName>
<ForeName>Graham A</ForeName>
<Initials>GA</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D002363">Case Reports</PublicationType>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
</Article>
<MedlineJournalInfo><Country>United States</Country>
<MedlineTA>Emerg Infect Dis</MedlineTA>
<NlmUniqueID>9508155</NlmUniqueID>
<ISSNLinking>1080-6040</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D002170" MajorTopicYN="N" Type="Geographic">Canada</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005814" MajorTopicYN="N">Genes, Viral</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016679" MajorTopicYN="Y">Genome, Viral</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D053124" MajorTopicYN="N">Influenza A Virus, H5N1 Subtype</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009154" MajorTopicYN="N">Mutation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Canada</Keyword>
<Keyword MajorTopicYN="N">H5N1 subtype</Keyword>
<Keyword MajorTopicYN="N">H9N2 subtype</Keyword>
<Keyword MajorTopicYN="N">HPAI</Keyword>
<Keyword MajorTopicYN="N">North America</Keyword>
<Keyword MajorTopicYN="N">avian influenza</Keyword>
<Keyword MajorTopicYN="N">full genome</Keyword>
<Keyword MajorTopicYN="N">genome analysis</Keyword>
<Keyword MajorTopicYN="N">highly pathogenic avian influenza</Keyword>
<Keyword MajorTopicYN="N">human</Keyword>
<Keyword MajorTopicYN="N">influenza</Keyword>
<Keyword MajorTopicYN="N">influenza A</Keyword>
<Keyword MajorTopicYN="N">reassortant</Keyword>
<Keyword MajorTopicYN="N">viruses</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2014</Year>
<Month>4</Month>
<Day>24</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2014</Year>
<Month>4</Month>
<Day>24</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2014</Year>
<Month>12</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">24755439</ArticleId>
<ArticleId IdType="doi">10.3201/eid2005.140164</ArticleId>
<ArticleId IdType="pmc">PMC4012823</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Virology. 1998 Feb 1;241(1):101-11</Citation>
<ArticleIdList><ArticleId IdType="pubmed">9454721</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Gen Virol. 2013 Dec;94(Pt 12):2616-26</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24077367</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Influenza Other Respir Viruses. 2014 May;8(3):384-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24483237</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Exp Med. 2006 Mar 20;203(3):689-97</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16533883</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2007 Aug 10;317(5839):825-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">17690300</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2008 Feb;82(3):1146-54</Citation>
<ArticleIdList><ArticleId IdType="pubmed">18032512</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Arch Virol. 2008;153(12):2253-61</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19020946</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Virology. 2009 Feb 5;384(1):28-32</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19117585</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Virus Res. 2009 Sep;144(1-2):123-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">19393699</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2010 Jul;84(13):6570-7</Citation>
<ArticleIdList><ArticleId IdType="pubmed">20427525</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Gen Virol. 2012 Mar;93(Pt 3):531-40</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22090209</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2012 Jun 22;336(6088):1534-41</Citation>
<ArticleIdList><ArticleId IdType="pubmed">22723413</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Antiviral Res. 2013 May;98(2):297-304</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23458714</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2013 Sep;87(18):9983-96</Citation>
<ArticleIdList><ArticleId IdType="pubmed">23843645</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list></list>
<tree><noCountry><name sortKey="Bastien, Nathalie" sort="Bastien, Nathalie" uniqKey="Bastien N" first="Nathalie" last="Bastien">Nathalie Bastien</name>
<name sortKey="Davis, C Todd" sort="Davis, C Todd" uniqKey="Davis C" first="C Todd" last="Davis">C Todd Davis</name>
<name sortKey="Drews, Steven J" sort="Drews, Steven J" uniqKey="Drews S" first="Steven J" last="Drews">Steven J. Drews</name>
<name sortKey="Fonseca, Kevin" sort="Fonseca, Kevin" uniqKey="Fonseca K" first="Kevin" last="Fonseca">Kevin Fonseca</name>
<name sortKey="Jang, Yunho" sort="Jang, Yunho" uniqKey="Jang Y" first="Yunho" last="Jang">Yunho Jang</name>
<name sortKey="Li, Yan" sort="Li, Yan" uniqKey="Li Y" first="Yan" last="Li">Yan Li</name>
<name sortKey="Pabbaraju, Kanti" sort="Pabbaraju, Kanti" uniqKey="Pabbaraju K" first="Kanti" last="Pabbaraju">Kanti Pabbaraju</name>
<name sortKey="Tang, Julian W" sort="Tang, Julian W" uniqKey="Tang J" first="Julian W" last="Tang">Julian W. Tang</name>
<name sortKey="Tellier, Raymond" sort="Tellier, Raymond" uniqKey="Tellier R" first="Raymond" last="Tellier">Raymond Tellier</name>
<name sortKey="Tipples, Graham A" sort="Tipples, Graham A" uniqKey="Tipples G" first="Graham A" last="Tipples">Graham A. Tipples</name>
<name sortKey="Wong, Sallene" sort="Wong, Sallene" uniqKey="Wong S" first="Sallene" last="Wong">Sallene Wong</name>
</noCountry>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/GrippeCanadaV3/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000285 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000285 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Sante |area= GrippeCanadaV3 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:24755439 |texte= Full-genome analysis of avian influenza A(H5N1) virus from a human, North America, 2013. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:24755439" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a GrippeCanadaV3
![]() | This area was generated with Dilib version V0.6.35. | ![]() |