Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.
Identifieur interne : 000056 ( Main/Corpus ); précédent : 000055; suivant : 000057Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.
Auteurs : Steven Van Borm ; Toon Rosseel ; Didier Vangeluwe ; Frank Vandenbussche ; Thierry Van Den Berg ; Bénédicte LambrechtSource :
- Archives of virology [ 1432-8798 ] ; 2012.
English descriptors
- KwdEn :
- Animals, Belgium (epidemiology), Charadriiformes (virology), Genetic Variation, Influenza A virus (genetics), Influenza A virus (isolation & purification), Influenza in Birds (diagnosis), Influenza in Birds (epidemiology), Influenza in Birds (virology), Nucleic Acid Amplification Techniques, Phylogeny, Phylogeography, Sequence Analysis, RNA.
- MESH :
- geographic , epidemiology : Belgium.
- diagnosis : Influenza in Birds.
- epidemiology : Influenza in Birds.
- genetics : Influenza A virus.
- isolation & purification : Influenza A virus.
- virology : Charadriiformes, Influenza in Birds.
- Animals, Genetic Variation, Nucleic Acid Amplification Techniques, Phylogeny, Phylogeography, Sequence Analysis, RNA.
Abstract
Nine influenza viruses isolated from gulls and shorebirds in Belgium (2008-2010), including H3N8, H5N2, H6N1, H11N9, H13N6, H13N8, and H16N3 subtypes, were targeted using random amplification and next-generation sequencing. The gene segments of these viruses segregated into three phylogeographic lineage types: (1) segments circulating in waterfowl in Eurasia with sporadic introduction in other species and in the Americas ("Eurasian avian"), (2) segments circulating in American waterfowl with sporadic introduction to other species and regions ("American avian"), and (3) segments circulating exclusively in gulls and shorebirds and having increased connectivity between the two hemispheres ("Charadriiformes specific"). Notably, an H6N1 and an H5N2 isolated from L. argentatus had mainly Eurasian avian genes but shared a matrix segment of American avian origin (first documentation in European gulls of transhemispheric reassortment). These data support the growing evidence of an important role of Charadriiformes birds in the dynamic nature of avian influenza ecology.
DOI: 10.1007/s00705-012-1323-x
PubMed: 22580556
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pubmed:22580556Le document en format XML
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Vandenbussche</name></author><author><name sortKey="Van Den Berg, Thierry" sort="Van Den Berg, Thierry" uniqKey="Van Den Berg T" first="Thierry" last="Van Den Berg">Thierry Van Den Berg</name></author><author><name sortKey="Lambrecht, Benedicte" sort="Lambrecht, Benedicte" uniqKey="Lambrecht B" first="Bénédicte" last="Lambrecht">Bénédicte Lambrecht</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2012">2012</date><idno type="RBID">pubmed:22580556</idno><idno type="pmid">22580556</idno><idno type="doi">10.1007/s00705-012-1323-x</idno><idno type="wicri:Area/Main/Corpus">000056</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000056</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.</title><author><name sortKey="Van Borm, Steven" sort="Van Borm, Steven" uniqKey="Van Borm S" first="Steven" last="Van Borm">Steven Van Borm</name><affiliation><nlm:affiliation>Department of Virology, Veterinary and Agrochemical Research Center, Groeselenbergstraat 99, 1180 Uccle, Belgium. steven.vanborm@coda-cerva.be</nlm:affiliation></affiliation></author><author><name sortKey="Rosseel, Toon" sort="Rosseel, Toon" uniqKey="Rosseel T" first="Toon" last="Rosseel">Toon Rosseel</name></author><author><name sortKey="Vangeluwe, Didier" sort="Vangeluwe, Didier" uniqKey="Vangeluwe D" first="Didier" last="Vangeluwe">Didier Vangeluwe</name></author><author><name sortKey="Vandenbussche, Frank" sort="Vandenbussche, Frank" uniqKey="Vandenbussche F" first="Frank" last="Vandenbussche">Frank Vandenbussche</name></author><author><name sortKey="Van Den Berg, Thierry" sort="Van Den Berg, Thierry" uniqKey="Van Den Berg T" first="Thierry" last="Van Den Berg">Thierry Van Den Berg</name></author><author><name sortKey="Lambrecht, Benedicte" 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xml:lang="en"><term>Belgium</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Influenza in Birds</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Influenza A virus</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Charadriiformes</term><term>Influenza in Birds</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Genetic Variation</term><term>Nucleic Acid Amplification Techniques</term><term>Phylogeny</term><term>Phylogeography</term><term>Sequence Analysis, RNA</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Nine influenza viruses isolated from gulls and shorebirds in Belgium (2008-2010), including H3N8, H5N2, H6N1, H11N9, H13N6, H13N8, and H16N3 subtypes, were targeted using random amplification and next-generation sequencing. The gene segments of these viruses segregated into three phylogeographic lineage types: (1) segments circulating in waterfowl in Eurasia with sporadic introduction in other species and in the Americas ("Eurasian avian"), (2) segments circulating in American waterfowl with sporadic introduction to other species and regions ("American avian"), and (3) segments circulating exclusively in gulls and shorebirds and having increased connectivity between the two hemispheres ("Charadriiformes specific"). Notably, an H6N1 and an H5N2 isolated from L. argentatus had mainly Eurasian avian genes but shared a matrix segment of American avian origin (first documentation in European gulls of transhemispheric reassortment). These data support the growing evidence of an important role of Charadriiformes birds in the dynamic nature of avian influenza ecology.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">22580556</PMID><DateCompleted><Year>2012</Year><Month>10</Month><Day>17</Day></DateCompleted><DateRevised><Year>2012</Year><Month>07</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-8798</ISSN><JournalIssue CitedMedium="Internet"><Volume>157</Volume><Issue>8</Issue><PubDate><Year>2012</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Archives of virology</Title><ISOAbbreviation>Arch. Virol.</ISOAbbreviation></Journal><ArticleTitle>Phylogeographic analysis of avian influenza viruses isolated from Charadriiformes in Belgium confirms intercontinental reassortment in gulls.</ArticleTitle><Pagination><MedlinePgn>1509-22</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00705-012-1323-x</ELocationID><Abstract><AbstractText>Nine influenza viruses isolated from gulls and shorebirds in Belgium (2008-2010), including H3N8, H5N2, H6N1, H11N9, H13N6, H13N8, and H16N3 subtypes, were targeted using random amplification and next-generation sequencing. The gene segments of these viruses segregated into three phylogeographic lineage types: (1) segments circulating in waterfowl in Eurasia with sporadic introduction in other species and in the Americas ("Eurasian avian"), (2) segments circulating in American waterfowl with sporadic introduction to other species and regions ("American avian"), and (3) segments circulating exclusively in gulls and shorebirds and having increased connectivity between the two hemispheres ("Charadriiformes specific"). Notably, an H6N1 and an H5N2 isolated from L. argentatus had mainly Eurasian avian genes but shared a matrix segment of American avian origin (first documentation in European gulls of transhemispheric reassortment). These data support the growing evidence of an important role of Charadriiformes birds in the dynamic nature of avian influenza ecology.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Van Borm</LastName><ForeName>Steven</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Department of Virology, Veterinary and Agrochemical Research Center, Groeselenbergstraat 99, 1180 Uccle, Belgium. steven.vanborm@coda-cerva.be</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rosseel</LastName><ForeName>Toon</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Vangeluwe</LastName><ForeName>Didier</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Vandenbussche</LastName><ForeName>Frank</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>van den Berg</LastName><ForeName>Thierry</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Lambrecht</LastName><ForeName>Bénédicte</ForeName><Initials>B</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2012</Year><Month>05</Month><Day>13</Day></ArticleDate></Article><MedlineJournalInfo><Country>Austria</Country><MedlineTA>Arch Virol</MedlineTA><NlmUniqueID>7506870</NlmUniqueID><ISSNLinking>0304-8608</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D001530" MajorTopicYN="N" Type="Geographic">Belgium</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D046091" MajorTopicYN="N">Charadriiformes</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="Y">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005585" MajorTopicYN="N">Influenza in Birds</DescriptorName><QualifierName UI="Q000175" MajorTopicYN="N">diagnosis</QualifierName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D021141" MajorTopicYN="N">Nucleic Acid Amplification Techniques</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D058974" MajorTopicYN="N">Phylogeography</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017423" MajorTopicYN="N">Sequence Analysis, RNA</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2012</Year><Month>02</Month><Day>02</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2012</Year><Month>03</Month><Day>22</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2012</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2012</Year><Month>5</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>10</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">22580556</ArticleId><ArticleId IdType="doi">10.1007/s00705-012-1323-x</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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