Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.
Identifieur interne : 000032 ( Main/Exploration ); précédent : 000031; suivant : 000033Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.
Auteurs : Anne Pohlmann [Allemagne] ; Elke Starick [Allemagne] ; Christian Grund [Allemagne] ; Dirk Höper [Allemagne] ; Günter Strebelow [Allemagne] ; Anja Globig [Allemagne] ; Christoph Staubach [Allemagne] ; Franz J. Conraths [Allemagne] ; Thomas C. Mettenleiter [Allemagne] ; Timm Harder [Allemagne] ; Martin Beer [Allemagne]Source :
- Scientific reports [ 2045-2322 ] ; 2018.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Virus de la grippe A, Virus recombinants.
- virologie : Grippe humaine.
- épidémiologie : Allemagne, Grippe humaine.
- Animaux, Humains, Oiseaux, Phylogénie, Saisons, Variation génétique, Virus de la grippe A.
English descriptors
- KwdEn :
- MESH :
- classification : Influenza A virus.
- epidemiology : Germany, Influenza, Human.
- genetics : Influenza A virus, Reassortant Viruses.
- virology : Influenza, Human.
- Animals, Birds, Genetic Variation, Humans, Phylogeny, Seasons.
Abstract
The outbreak of highly pathogenic avian influenza H5Nx viruses in winter 2016/2017 was the most severe HPAI epizootic ever reported in Germany. The H5N8 and H5N5 viruses detected in birds in Germany in 2016/2017 represent a reassortant swarm of at least five distinct genotypes, which carried closely related HA segments derived from clade 2.3.4.4b. The genotypes of these viruses and their spatio-temporal distribution indicated a unique situation with multiple independent entries of HPAIV into Germany.
DOI: 10.1038/s41598-017-16936-8
PubMed: 29311555
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.</title>
<author><name sortKey="Pohlmann, Anne" sort="Pohlmann, Anne" uniqKey="Pohlmann A" first="Anne" last="Pohlmann">Anne Pohlmann</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Starick, Elke" sort="Starick, Elke" uniqKey="Starick E" first="Elke" last="Starick">Elke Starick</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Grund, Christian" sort="Grund, Christian" uniqKey="Grund C" first="Christian" last="Grund">Christian Grund</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hoper, Dirk" sort="Hoper, Dirk" uniqKey="Hoper D" first="Dirk" last="Höper">Dirk Höper</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Strebelow, Gunter" sort="Strebelow, Gunter" uniqKey="Strebelow G" first="Günter" last="Strebelow">Günter Strebelow</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Globig, Anja" sort="Globig, Anja" uniqKey="Globig A" first="Anja" last="Globig">Anja Globig</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Staubach, Christoph" sort="Staubach, Christoph" uniqKey="Staubach C" first="Christoph" last="Staubach">Christoph Staubach</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Conraths, Franz J" sort="Conraths, Franz J" uniqKey="Conraths F" first="Franz J" last="Conraths">Franz J. Conraths</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Mettenleiter, Thomas C" sort="Mettenleiter, Thomas C" uniqKey="Mettenleiter T" first="Thomas C" last="Mettenleiter">Thomas C. Mettenleiter</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Harder, Timm" sort="Harder, Timm" uniqKey="Harder T" first="Timm" last="Harder">Timm Harder</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany. timm.harder@fli.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Beer, Martin" sort="Beer, Martin" uniqKey="Beer M" first="Martin" last="Beer">Martin Beer</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2018">2018</date>
<idno type="RBID">pubmed:29311555</idno>
<idno type="pmid">29311555</idno>
<idno type="doi">10.1038/s41598-017-16936-8</idno>
<idno type="wicri:Area/Main/Corpus">000037</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000037</idno>
<idno type="wicri:Area/Main/Curation">000037</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000037</idno>
<idno type="wicri:Area/Main/Exploration">000037</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.</title>
<author><name sortKey="Pohlmann, Anne" sort="Pohlmann, Anne" uniqKey="Pohlmann A" first="Anne" last="Pohlmann">Anne Pohlmann</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Starick, Elke" sort="Starick, Elke" uniqKey="Starick E" first="Elke" last="Starick">Elke Starick</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Grund, Christian" sort="Grund, Christian" uniqKey="Grund C" first="Christian" last="Grund">Christian Grund</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Hoper, Dirk" sort="Hoper, Dirk" uniqKey="Hoper D" first="Dirk" last="Höper">Dirk Höper</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Strebelow, Gunter" sort="Strebelow, Gunter" uniqKey="Strebelow G" first="Günter" last="Strebelow">Günter Strebelow</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Globig, Anja" sort="Globig, Anja" uniqKey="Globig A" first="Anja" last="Globig">Anja Globig</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Staubach, Christoph" sort="Staubach, Christoph" uniqKey="Staubach C" first="Christoph" last="Staubach">Christoph Staubach</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Conraths, Franz J" sort="Conraths, Franz J" uniqKey="Conraths F" first="Franz J" last="Conraths">Franz J. Conraths</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Mettenleiter, Thomas C" sort="Mettenleiter, Thomas C" uniqKey="Mettenleiter T" first="Thomas C" last="Mettenleiter">Thomas C. Mettenleiter</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Harder, Timm" sort="Harder, Timm" uniqKey="Harder T" first="Timm" last="Harder">Timm Harder</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany. timm.harder@fli.de.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Beer, Martin" sort="Beer, Martin" uniqKey="Beer M" first="Martin" last="Beer">Martin Beer</name>
<affiliation wicri:level="1"><nlm:affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</nlm:affiliation>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems</wicri:regionArea>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
<wicri:noRegion>Riems</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Scientific reports</title>
<idno type="eISSN">2045-2322</idno>
<imprint><date when="2018" type="published">2018</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Birds</term>
<term>Genetic Variation</term>
<term>Germany (epidemiology)</term>
<term>Humans</term>
<term>Influenza A virus (classification)</term>
<term>Influenza A virus (genetics)</term>
<term>Influenza, Human (epidemiology)</term>
<term>Influenza, Human (virology)</term>
<term>Phylogeny</term>
<term>Reassortant Viruses (genetics)</term>
<term>Seasons</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Allemagne (épidémiologie)</term>
<term>Animaux</term>
<term>Grippe humaine (virologie)</term>
<term>Grippe humaine (épidémiologie)</term>
<term>Humains</term>
<term>Oiseaux</term>
<term>Phylogénie</term>
<term>Saisons</term>
<term>Variation génétique</term>
<term>Virus de la grippe A ()</term>
<term>Virus de la grippe A (génétique)</term>
<term>Virus recombinants (génétique)</term>
</keywords>
<keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Influenza A virus</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Germany</term>
<term>Influenza, Human</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Influenza A virus</term>
<term>Reassortant Viruses</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Virus de la grippe A</term>
<term>Virus recombinants</term>
</keywords>
<keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Grippe humaine</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Influenza, Human</term>
</keywords>
<keywords scheme="MESH" qualifier="épidémiologie" xml:lang="fr"><term>Allemagne</term>
<term>Grippe humaine</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Birds</term>
<term>Genetic Variation</term>
<term>Humans</term>
<term>Phylogeny</term>
<term>Seasons</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Animaux</term>
<term>Humains</term>
<term>Oiseaux</term>
<term>Phylogénie</term>
<term>Saisons</term>
<term>Variation génétique</term>
<term>Virus de la grippe A</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The outbreak of highly pathogenic avian influenza H5Nx viruses in winter 2016/2017 was the most severe HPAI epizootic ever reported in Germany. The H5N8 and H5N5 viruses detected in birds in Germany in 2016/2017 represent a reassortant swarm of at least five distinct genotypes, which carried closely related HA segments derived from clade 2.3.4.4b. The genotypes of these viruses and their spatio-temporal distribution indicated a unique situation with multiple independent entries of HPAIV into Germany.</div>
</front>
</TEI>
<pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">29311555</PMID>
<DateCompleted><Year>2018</Year>
<Month>11</Month>
<Day>21</Day>
</DateCompleted>
<DateRevised><Year>2019</Year>
<Month>01</Month>
<Day>08</Day>
</DateRevised>
<Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2045-2322</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>8</Volume>
<Issue>1</Issue>
<PubDate><Year>2018</Year>
<Month>01</Month>
<Day>08</Day>
</PubDate>
</JournalIssue>
<Title>Scientific reports</Title>
<ISOAbbreviation>Sci Rep</ISOAbbreviation>
</Journal>
<ArticleTitle>Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17.</ArticleTitle>
<Pagination><MedlinePgn>15</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1038/s41598-017-16936-8</ELocationID>
<Abstract><AbstractText>The outbreak of highly pathogenic avian influenza H5Nx viruses in winter 2016/2017 was the most severe HPAI epizootic ever reported in Germany. The H5N8 and H5N5 viruses detected in birds in Germany in 2016/2017 represent a reassortant swarm of at least five distinct genotypes, which carried closely related HA segments derived from clade 2.3.4.4b. The genotypes of these viruses and their spatio-temporal distribution indicated a unique situation with multiple independent entries of HPAIV into Germany.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pohlmann</LastName>
<ForeName>Anne</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Starick</LastName>
<ForeName>Elke</ForeName>
<Initials>E</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Grund</LastName>
<ForeName>Christian</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Höper</LastName>
<ForeName>Dirk</ForeName>
<Initials>D</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Strebelow</LastName>
<ForeName>Günter</ForeName>
<Initials>G</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Globig</LastName>
<ForeName>Anja</ForeName>
<Initials>A</Initials>
<AffiliationInfo><Affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Staubach</LastName>
<ForeName>Christoph</ForeName>
<Initials>C</Initials>
<AffiliationInfo><Affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Conraths</LastName>
<ForeName>Franz J</ForeName>
<Initials>FJ</Initials>
<Identifier Source="ORCID">http://orcid.org/0000-0002-7400-9409</Identifier>
<AffiliationInfo><Affiliation>Institute of Epidemiology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Mettenleiter</LastName>
<ForeName>Thomas C</ForeName>
<Initials>TC</Initials>
<AffiliationInfo><Affiliation>Institute of Molecular Virology and Cell Biology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Harder</LastName>
<ForeName>Timm</ForeName>
<Initials>T</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany. timm.harder@fli.de.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Beer</LastName>
<ForeName>Martin</ForeName>
<Initials>M</Initials>
<AffiliationInfo><Affiliation>Institute of Diagnostic Virology, Friedrich-Loeffler-Institut, Südufer 10, 17493, Greifswald-Insel, Riems, Germany.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2018</Year>
<Month>01</Month>
<Day>08</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>England</Country>
<MedlineTA>Sci Rep</MedlineTA>
<NlmUniqueID>101563288</NlmUniqueID>
<ISSNLinking>2045-2322</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D001717" MajorTopicYN="N">Birds</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D005858" MajorTopicYN="N">Germany</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D009980" MajorTopicYN="N">Influenza A virus</DescriptorName>
<QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D007251" MajorTopicYN="N">Influenza, Human</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016865" MajorTopicYN="N">Reassortant Viruses</DescriptorName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012621" MajorTopicYN="Y">Seasons</DescriptorName>
</MeshHeading>
</MeshHeadingList>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2017</Year>
<Month>07</Month>
<Day>28</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2017</Year>
<Month>11</Month>
<Day>21</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2018</Year>
<Month>1</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2018</Year>
<Month>1</Month>
<Day>10</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2018</Year>
<Month>11</Month>
<Day>22</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="pubmed">29311555</ArticleId>
<ArticleId IdType="doi">10.1038/s41598-017-16936-8</ArticleId>
<ArticleId IdType="pii">10.1038/s41598-017-16936-8</ArticleId>
<ArticleId IdType="pmc">PMC5758748</ArticleId>
</ArticleIdList>
<ReferenceList><Reference><Citation>Nat Commun. 2014 Jul 23;5:4448</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25055345</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Trop Anim Health Prod. 2017 Jun;49(5):1089-1093</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28478526</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Vet Microbiol. 2014 Jun 25;171(1-2):23-30</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24745625</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Jun;23 (6):1048-1051</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28518040</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Apr;23 (4):637-641</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28169827</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>J Virol. 2015 Jun;89(12):6521-4</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25855748</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Bioinformatics. 2014 May 1;30(9):1312-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24451623</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Euro Surveill. 2015 Mar 26;20(12):null</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25846491</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Influenza Other Respir Viruses. 2015 Sep;9(5):271-6</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25966311</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Feb;23 (2):359-360</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27875109</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2014 Aug;20(8):1315-8</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25075453</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2015 May;21(5):860-3</Citation>
<ArticleIdList><ArticleId IdType="pubmed">25897703</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Science. 2016 Oct 14;354(6309):213-217</Citation>
<ArticleIdList><ArticleId IdType="pubmed">27738169</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Sep;23 (9):1543-1547</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28661831</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Mol Biol Evol. 2006 Feb;23(2):254-67</Citation>
<ArticleIdList><ArticleId IdType="pubmed">16221896</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Apr;23 (4):633-636</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28055819</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2014 Jun;20(6):1087-9</Citation>
<ArticleIdList><ArticleId IdType="pubmed">24856098</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Arch Virol. 2017 May;162(5):1381-1385</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28138776</ArticleId>
</ArticleIdList>
</Reference>
<Reference><Citation>Emerg Infect Dis. 2017 Apr;23 (4):717-719</Citation>
<ArticleIdList><ArticleId IdType="pubmed">28117031</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
<affiliations><list><country><li>Allemagne</li>
</country>
</list>
<tree><country name="Allemagne"><noRegion><name sortKey="Pohlmann, Anne" sort="Pohlmann, Anne" uniqKey="Pohlmann A" first="Anne" last="Pohlmann">Anne Pohlmann</name>
</noRegion>
<name sortKey="Beer, Martin" sort="Beer, Martin" uniqKey="Beer M" first="Martin" last="Beer">Martin Beer</name>
<name sortKey="Conraths, Franz J" sort="Conraths, Franz J" uniqKey="Conraths F" first="Franz J" last="Conraths">Franz J. Conraths</name>
<name sortKey="Globig, Anja" sort="Globig, Anja" uniqKey="Globig A" first="Anja" last="Globig">Anja Globig</name>
<name sortKey="Grund, Christian" sort="Grund, Christian" uniqKey="Grund C" first="Christian" last="Grund">Christian Grund</name>
<name sortKey="Harder, Timm" sort="Harder, Timm" uniqKey="Harder T" first="Timm" last="Harder">Timm Harder</name>
<name sortKey="Hoper, Dirk" sort="Hoper, Dirk" uniqKey="Hoper D" first="Dirk" last="Höper">Dirk Höper</name>
<name sortKey="Mettenleiter, Thomas C" sort="Mettenleiter, Thomas C" uniqKey="Mettenleiter T" first="Thomas C" last="Mettenleiter">Thomas C. Mettenleiter</name>
<name sortKey="Starick, Elke" sort="Starick, Elke" uniqKey="Starick E" first="Elke" last="Starick">Elke Starick</name>
<name sortKey="Staubach, Christoph" sort="Staubach, Christoph" uniqKey="Staubach C" first="Christoph" last="Staubach">Christoph Staubach</name>
<name sortKey="Strebelow, Gunter" sort="Strebelow, Gunter" uniqKey="Strebelow G" first="Günter" last="Strebelow">Günter Strebelow</name>
</country>
</tree>
</affiliations>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/GrippeAllemagneV3/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000032 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000032 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Sante |area= GrippeAllemagneV3 |flux= Main |étape= Exploration |type= RBID |clé= pubmed:29311555 |texte= Swarm incursions of reassortants of highly pathogenic avian influenza virus strains H5N8 and H5N5, clade 2.3.4.4b, Germany, winter 2016/17. }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:29311555" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \ | NlmPubMed2Wicri -a GrippeAllemagneV3
This area was generated with Dilib version V0.6.35. |